RNA id: XM_039802687.1


Basic Information

Item Value
RNA id XM_039802687.1
length 3788
RNA type mRNA
GC content 0.45
exon number 13
gene id cds1
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 33077246 ~ 33112816 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTAGGAGGAGGGGAGCAGGGATTGGGACTGCGGTGataaacaaacacacgcagTGCTGTCGTTAGTGTTTTGTCGAGCTCTGTTGCTACACTTTGGCAGCACCGGCTGACTTTCAGGAGAGCTGACCTTCTTCACGGACCAAGCATTAAAGTCAAGCccgggttaaaaaaaaaaaatccaggacTTTATCTAATAAAACCCCAGGATTGGTGtccccttcttcctccctccctccctcctccccctcggTGTCGGCTTATGTGACACATTAACGTCCCGGGCAGCGAAACGAGCGAAACATGACGGAGCTGAGAAAGCGAGGCGGAGGCGGAGGAGACCCTGACAGCACCGAGAATATCAGCGATAAGGAGGCCGATGGGGATGACAGGCTGGGCTTGCAAGGTGATGCAGAGGGAGAATGTGATGGGGACTCCAAAGCAGACACGCCAGATGTTCCTCTCCCCACAGCAGACACAGACAACACTCCACAATACCTGAACAAAGCTCTGGAGGGCCTGCCGCCCAGATGGAAGAACTACTGGATACGAGGAGTTCTGTCTTTAGCCATGATTTCTGGCTTTTTTCTCATCATCTATATGGGACCTGTTGCTCTTATATTAGTGGTCATGACTGTCCAAATCAAGTGTTTCCAAGAAATCATCACCATCGGCTACAGAGTTTACCATTCCTATGAGCTGCCTTGGTTCAGGACACTAAGCTGGTACTTTCTGATATGCGTCAACTACTTCTTCTATGGGGAAACTGTTGCAGATTACTTTGGGGCTCTGGTGCAGAGGGAGGAACCTCTGCAGTTCCTGGCTCGCTATCACCGCTTCATCTCCTTCGCTTTGTACCTCGCAGGTTTCTGCATGTTTGTGCTGAGTTTAGTGAAGAAACATTACCGCCTGCAGTTTTATATGTTTGCTTGGACCCATGTGACCCTGTTGATTGTGGTAACTCAGTCCCACCTTGTCATTCAGAACCTGTTTGAAGGAATGATCTGGTTCATTGTCCCGATCTCCATTGTGATATGCAATGACATTATGGCCTATCTGTTTGGATTCTTCTTTGGGAGGACTCCACTGATCAAGCTCTCACCTAAGAAGACATGGGAGGGCTTCATCGGAGGTTTCTTCGCCACTGTAGTCTTTGGCTTTATCCTGGCCTACCTCCTGTCTCAGTTCCAGTACTTTGTGTGTCCTGTGGGCGTCAACAGTGAGACCAATGGGTTTACAGTTGAATGTGAGCCTTCTGATATATTTGTGATGCACGAATACACTCTTCCTGCTGTGGTACAAAACATACTGAGATGGAAAACGGTAAACCTGTACCCCTTCCAGATCCACAGCATCTTCCTCTCGTCCTTCGGGTCTCTCATCGGGCCTTTCGGCGGCTTCTTTGCCAGCGGCTTCAAGCGAGCCTTCAAAATCAAAGACTTTGCTAACACCATCCCCGGCCACGGTGGCATCATGGATCGATTCGACTGTCAGTACCTGATGGCCACCTTCACACACGTCTATATAGGCAGCTTCATCAGGGGACCGAACCCAAGCAAGGTGCTACAGCAGCTGATGATGCTTCGGCCTGAACAGCAGCTCAGCATTTTCCACACTCTGCACTCccagctgagagagagggggatgctcCCCCAAGCTGCTGCCCAGGCTGAGTGAAAGACAGCCAGCTTCACAGGGTGATGACTGCAGAGTGTGTGATGGTTTGGAAAGTTTGTGtaagcatgtacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacactcttaggTATGGCTGTATGGTGTGTGATCCCAGGCCTCTCTCAGAGCGTCATCCTGCCGACTCTTCATTTGACTTCCAACCAGCTGATAATCACGACTTTGAACCTGAGGTGACTCTCCAGTGTACGTGGAATAACCTCgtagtaaaaaacaacaacaacacaataccAACGACAACAAAATAGGCGGCTTTGTTGCTTTCCACTTGGACCAGCACATAATCTTCAACACGCTTCACGAGTGAACAGGCCGTCCCCATCCTAAAAACGTACAGACTGAAGATAAAATGTCTTATCGAACAAAACGGACCCTAAAGCACATGGCTTTCTCAGTGCAGGTGGACGTTGGATGTGCAGTTTCCCTGTGGACAGACAATATTGCACTGACTTAAGCTGAACAAAAGgatttaaaaagctttttacCAGCATAAACTGGGCCCAAAGTGTTGGGCACGTGGACCTGAGGTACAGCAAACAGACTGTTGAGACTTGTCTTTCTGGGGTTTGGGTGTGGGCGAAGCAATGATGCAGCAGGGTTGTCAGAATACTACAGTATAGACACTGTTTTATATACTATGCTCTATTTAATGGTCCTAACCTCACAGCTTAACAAAACATGTAGCATGTACGCAAGTCCTGTCTTGGGCTACAGCTAACTTAGCCATGTTTATTCTCTTCTTCCACAGAGGGAACTTTAAGCTTTTAGGTTTCTGTCTAAATCTAAATAACTCGCACAAATAAAGTCAATCCAGATTGACTGTAGGCATGTTAACGCAAAAACTAGAGCATCAGCACTCAAGTTAATGTATTGTACATAAATATACTGAAGATATTTAGCTGcacaaatacataatacatactataactaaaaaaaacactttttaagcTATGAAAAATGATATGCAAAAAAGAGATATAACTCATTTGTAGCCTTTAGCATGAACAAATTAGATTTTTATGAGGTGGGATGTAGATTTGATCCGAGGTTGCTGCTCATTTAGAGGGTGTGCTGGTTGAACCTATAAAAGagattgggggaaaaaaaaaaaaaaagtatttaaaggaatagtttgacatttggaAAATACTCTTATTGTTGGCGAGAATTAGATCAGAAGATCGACACCAAtctcgtgtctgtgtgttgggTATGTAGCTTGAGCCGtgagttaaagtgctcatatcatgctcattttcaggttcataattgtatttagaggttatatcagaataggtttacatagtttaattttcaaaaaacatcatatttttattGTACTGCACGTTGCTGCAGCTCTtcctttcaccctgtgtgttgagctctctgttttagctacagagtgagacatctcacttctgtaccatctttgttgggaatcgcacatgtgcagtagctaggtaaggactaccagctagtcagttgcagagcagGAGGGAGTGTCACCCTAGCAGcgaggcgagcattataacgtgtgttacaaagtgaggtacgttcgtcacggaagtaaaggctggactacaatagagctggttgtgaacagtgttttctgttggagatggtaagtccccttggggtggactttgagctttttcactttgtaaacctataatatgcacaaaaaagatatagaacACAATAGGGAaatggaaaaagccaaaaaacataatatgagcactttaaagattGGAAGCCTGGTGAAACAGCAAAATTCTAAAATCTGCCTACCAACACCTATAAAGCTCTTAACACAATGTTGGTGAACGACAGTTGCGTGCACTAACCTCCCGTAGTTGTCACAGTGACGACCAAACGCGTGCAGCTACCTTGGATGCTACGGACTACGTTGGAATGTGAATGATCACAAATTGATTATCTGTTGTTCATCAAGAAAGATACACCACATCTAAAACTTTAAGTTGTAATTtttacatgtttgtttgtgtacggattaaacaaacaatttatGTGT

Function

GO: NA

KEGG:

id description
K00981 E2.7.7.41, CDS1, CDS2, cdsA; phosphatidate cytidylyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU88897 lncRNA upstream 4524 33071537 ~ 33072722 (+) True G66439
TU88898 lncRNA upstream 4524 33072320 ~ 33072722 (+) False G66439
TU88756 lncRNA upstream 338871 32720755 ~ 32738375 (+) True G66340
XR_005639506.1 lncRNA upstream 383159 32685340 ~ 32694087 (+) True LOC120560708
TU88743 lncRNA upstream 384029 32685269 ~ 32693217 (+) False LOC120560708
TU88984 lncRNA downstream 16869 33127702 ~ 33127902 (+) True G66496
TU88985 lncRNA downstream 24957 33135790 ~ 33136017 (+) True G66497
TU88986 lncRNA downstream 29035 33139868 ~ 33140093 (+) True G66498
TU89020 lncRNA downstream 238673 33349506 ~ 33350553 (+) True G66521
TU89021 lncRNA downstream 240866 33351699 ~ 33352950 (+) True G66522
XM_039804502.1 mRNA upstream 6736 32957229 ~ 33070510 (+) False wdfy3
XM_039804498.1 mRNA upstream 6736 32964199 ~ 33070510 (+) True wdfy3
XM_039804501.1 mRNA upstream 6736 32964199 ~ 33070510 (+) False wdfy3
XM_039804500.1 mRNA upstream 6736 32964199 ~ 33070510 (+) False wdfy3
XM_039804504.1 mRNA upstream 6736 32964199 ~ 33070510 (+) False wdfy3
XM_039802789.1 mRNA downstream 46081 33156914 ~ 33294101 (+) True rasgef1ba
XM_039802791.1 mRNA downstream 137571 33248404 ~ 33252407 (+) True LOC120560373
XM_039802790.1 mRNA downstream 148876 33259709 ~ 33294101 (+) False rasgef1ba
XM_039803542.1 mRNA downstream 192506 33303339 ~ 33344015 (+) True prkg2
XM_039804106.1 mRNA downstream 406766 33517599 ~ 33573326 (+) False antxr2a
unassigned_transcript_266 other upstream 505487 32571688 ~ 32571759 (+) True trnap-ugg
TU88651 other upstream 707262 32364860 ~ 32369984 (+) True G66263
TU88642 other upstream 747256 32322507 ~ 32329990 (+) True G66256
TU88617 other upstream 940280 32126293 ~ 32136966 (+) True G66231
XR_005639593.1 other upstream 1266967 31809632 ~ 31810279 (+) False dmrt3a
TU89079 other downstream 665092 33775925 ~ 33776398 (+) True G66578
XR_005639528.1 other downstream 1403177 34514010 ~ 34527405 (+) False cfap157
TU89395 other downstream 1655113 34765946 ~ 34773700 (+) False LOC120561070
TU89401 other downstream 1750666 34861499 ~ 34864266 (+) False G66832
TU89402 other downstream 1750666 34861499 ~ 34864266 (+) False G66832

Expression Profile