RNA id: XM_039802690.1


Basic Information

Item Value
RNA id XM_039802690.1
length 1177
RNA type mRNA
GC content 0.43
exon number 9
gene id LOC120560324
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 20397583 ~ 20400992 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCTGACGTTGAGGTTGAGGCAGGGCAAACCGAGGCAGACGAGTCCTCAGAATGTAAACATGGTGACAGGTATCGTTAGATGAGAGAAACGCCAAAATGGTCTTCGAAAGCTTGGTGGTAGATGTCCTCAACCGATTTTTAGGGGACTACGTTGTCAACCTTGACAGCTCACAGCTGAAGCTTGGAATATGGGGAGGTGATGCTGTTCTTACAAATCTTGAAATAAAGGAAAATGCCTTGAGTCAACTTGACATTCCTTTTAAAGTGAGAGCCGGCCATATAGGACGGCTGGAGCTAAAGATACCATGGAAAAACCTCTACACCCAGTCAGTAGAAGCAACACTGGATGGCGTCTATCTGCTCATAGTTCCCACAGCAAGTATAAAGTATGATGCAGAAAAGGAGGAGAAGCAGCTACAGGAGGCTCGTCAGAGGGAGCTACAGCGGATAGAGGAGACAAAGATAAAGGCTGCTGAGCAAGAGAACCCTGATCTGGAAAAACAGGACACTTTTGTGGAGAAGCTTGTCACTCAGGTCATCAAAAACCTGCAGGTCAAGATCTCTAACATCCATGTACGCTATGAAGATAATGTCACTAATCCAAACTGTCCTTTGTCATTTGGAGTGTCACTTAAAAACCTCAGTCTTCAGACATCTGATAAGAACTGGAATCCCAGACTTTTGGATGAAAATTCCAGGCTTTTCTTCAAGtTGGTTAAACTAGACAGCTTGTTTGCCTACTGGAATGTCAACTCTTTGCTCTTCTCCAATCACAGTGCAGATGAGGCCTTGGTGAGTCTCCCTTTTATTTTACTGTGTTGTCCCTTGTCTCCACCAGCTTAGATATAGTCAAGCCATTGTCTGTCTTCTTCTGCTTTATTGAGGCTGAACACACAACCTCATTGTGGGCTCACAGAACACAACTTTATCAGGGTTTCTCCCTCAACAGAACAGTTTCAAAGTAACATAGTCCCAATATGAAAGGCCTTTTTCTGAAATCCTTTTAAAGCCTTTGTTATTAAATGATCGCCGTTGAATATTGGAACAAGGCTTCTGCACATTTTTCTGAGATCAATGCCGATTTTATTAACCATTTATTTCATCCACAAGGGCTCTTTCTAGTATAAGCCCAATGTGTAGAATGTTTATAAATGTGGGGTTGTGATGGTTTACTACTG

Function

GO: NA

KEGG:

id description
K19525 VPS13A_C; vacuolar protein sorting-associated protein 13A/C

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU84965 lncRNA upstream 4952 20392407 ~ 20392631 (+) True G63385
TU84680 lncRNA upstream 370417 20026910 ~ 20027166 (+) True G63204
TU84679 lncRNA upstream 370828 20025755 ~ 20026755 (+) True G63203
TU84678 lncRNA upstream 371835 20024913 ~ 20025748 (+) True G63202
TU84668 lncRNA upstream 379171 20018117 ~ 20018412 (+) True G63192
TU84955 lncRNA downstream 40719 20441711 ~ 20442055 (+) False vps13a
TU84956 lncRNA downstream 41162 20442154 ~ 20442952 (+) True G63377
XR_005639468.1 lncRNA downstream 157348 20558340 ~ 20564445 (+) True LOC120560275
TU85049 lncRNA downstream 164676 20565668 ~ 20566142 (+) True G63451
TU85055 lncRNA downstream 234597 20635589 ~ 20637358 (+) True G63457
XM_039803159.1 mRNA upstream 1466 20394843 ~ 20396117 (+) True LOC120560540
XM_039802110.1 mRNA upstream 16092 20364609 ~ 20381491 (+) True foxb2
XM_039802891.1 mRNA downstream 72659 20473651 ~ 20490586 (+) False wdr31
XM_039802894.1 mRNA downstream 72659 20473651 ~ 20490586 (+) False wdr31
XM_039802893.1 mRNA downstream 75847 20476839 ~ 20490586 (+) False wdr31
XM_039802888.1 mRNA downstream 76820 20477812 ~ 20490586 (+) False wdr31
XM_039802889.1 mRNA downstream 77542 20478534 ~ 20490586 (+) False wdr31
TU84360 other upstream 948633 19434907 ~ 19448950 (+) False rasl10a
XR_005639481.1 other upstream 1716422 18661157 ~ 18681161 (+) False acacb
TU83744 other upstream 1977993 18416128 ~ 18419590 (+) False tbx5b
TU83742 other upstream 1981577 18407387 ~ 18416006 (+) False tbx5b
TU83701 other upstream 2066353 18330705 ~ 18331230 (+) True G62513
XR_005639482.1 other downstream 76820 20477812 ~ 20488838 (+) False wdr31
XR_005639483.1 other downstream 76820 20477812 ~ 20488838 (+) False wdr31
TU85087 other downstream 275425 20676417 ~ 20677916 (+) True G63480
XR_005639510.1 other downstream 1187884 21588876 ~ 21598799 (+) False LOC120560787
TU85622 other downstream 2528907 22929899 ~ 22930205 (+) True G63905

Expression Profile