RNA id: XM_039802705.1


Basic Information

Item Value
RNA id XM_039802705.1
length 1907
RNA type mRNA
GC content 0.52
exon number 14
gene id dbnlb
representative False

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 38637016 ~ 38657534 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AAGTAGCCAGTAGCTAAACTAGCTTCGTGCCCAGCTGAAAGTCAGCATCGTCGCCACTCCTCCCAATAGGAAGGGCGCATCCCGGATAGCTAGCTGGCTAGCTGTACTCGGCATAACGATGGCAGTTAACCTCAGCAAAAATGGCCCTGCATTAACGGCTGCATTTAAAGAAGTGGTAGATGAAAAATCCAATACCAACTGGGCCTTGTTCACCTACGAGGGAAACAGCAATGATATCCGCCTGGCAGACAAGGGGGACGGAGGACTGGAGGAGTTGGTTGAGGAATTGAACAGTGGAAAAGTGATGTACGCTTTCTGCCGGGTGCAGGATCCAAACTCTGGCCTGCCAAAATACGTCCTCATCAACTGGACTGGAGAGGGAGTGAAGGACGCCAGGAAAGGAATATGTGCCAATCACGTCCGCTCCATGGCCGATTTTCTTAAGGGTGCCCACGTCACGATAAACGCCAGAGGAGACGAGGACGTGGAGCCCGAGGCCATCATGCAGAAGGTGGCCAAAGCGTCGGGGGCGAACTACAGCTTCCACAAAGAAGCTCCCAGCCGCTTCCAGGACAGCGGTCCTCAGGGTCCCGTGGGCTCAGTCTACCAGAAGACCAACGCGATGTCCGAAATCAAAAAGACCAACAAAGACAACTTCTGGGCTCAGGCAGAGaaagaagaggagaaacgTCGGCAGGAGGAGCGGCACAAGGCAGACGAGGAGCGACagaagatggagaaagagaggaaagacagagaggcCAAGGAGGCAATGCAGAGGGACAAAAGGGACAAGGAGAGGTCCACTCAAATCGACCAACAAAAGAagtaccagcagcagcaggacgcTGAGAGTAAAGACCAGGAGAAACCACGCGTGgaggagcaggaggagaacCAGGCAGTCGAGAAGAAAGCGGTCAAGAGAGGTGAATCTGTGGAAAAGGTCAATGAGGCAGCTTCTCTCATCTCTCAGCGTGCCATGAACCCCAGAGAGATGTtcaagcagagagagaggggaataacTCCCAGTGACTCAGACGTCCCCTCTGCGGCCCCTGCCAGCCCCCAGCCAGAGCCTGATGTGGATGATGGACAGTCCCGCTGTGAGTATGATGAGCAGGAGGCCACCCCCCAGGAGCAGTGTGAAGAGGAGGCACCGGCTGCCAACTCCTACGTCCAGGAGACGGCTTATGAAAAGCCCGCTCAGCCCCCCGTGGAGGAGAACAACTTGTACGAGGTGACAGCCGACGAGACACCAGACAGAGGCACCTGTGCCAGAGCCTTGTATGACTACCAGGCTGCTGATGACACGGAGATCTCGTTCGACCCCGACGATATGATCACCGGGATCGAGATGATAGACGAGGGCTGGTGGCGGGGCTTCAGCCCAGACGGCCATTTTGGAATGTTCCCAGCCAATTACGTCGAGCTTATCTAGCCCACCCTACTCCCACCCCCACCACCTCCCCTTTTCTCCCTTTCCCAAAGTCAATCCTCGCACACAAGTGAGCCGAGAACGGAGCAAACGATCCTCCACAGCATGGACCAATCAACGGATGGTAATTGTGGGCCAGACGCTTTCAAAATCTCtcctctattaaaaaaaaaaaaaggcaattcCAATTAAATTGTTGATGTTGTGAGCAACTGATGGTATAATTTAGTCGGACCAATACTCCCTCCCACTCCCCCCAAATATCCAACTCTTTTCCTATAAATGTGATGCAGTACAATATTGGCCTTTTTGTTAAGTCTTTAATTCCTTTTTGTTGTGAGCATTTCTAGTCCACATTCCTTACAAAGTGACTTCACTTCTGTTTCAGGTATGATTCTGTTGTCACTTGTAGCAAACGCTCCTGTACATTTCAGGAGagagagaattaaaaaaaaaaaaaaaaaaaaaa

Function

GO:

id name namespace
GO:0005622 intracellular anatomical structure cellular_component
GO:0003779 actin binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU90759 lncRNA downstream 190230 38445979 ~ 38446786 (-) True G67926
TU90748 lncRNA downstream 222480 38414205 ~ 38414536 (-) True G67920
TU90725 lncRNA downstream 237924 38300289 ~ 38399092 (-) True G67897
TU90804 lncRNA upstream 60705 38718238 ~ 38718758 (-) True G67964
TU90814 lncRNA upstream 125306 38782839 ~ 38785317 (-) False G67969
TU90815 lncRNA upstream 126825 38784358 ~ 38785317 (-) True G67969
TU90819 lncRNA upstream 167758 38825291 ~ 38825971 (-) False G67972
TU90820 lncRNA upstream 167758 38825291 ~ 38825971 (-) True G67972
XM_039802699.1 mRNA downstream 16553 38600352 ~ 38620463 (-) False arid5a
XM_039802700.1 mRNA downstream 19881 38600352 ~ 38617135 (-) True arid5a
XM_039802697.1 mRNA downstream 57668 38560362 ~ 38579348 (-) False gins4
XM_039802698.1 mRNA downstream 57817 38560362 ~ 38579199 (-) True gins4
XM_039802692.1 mRNA downstream 83839 38549620 ~ 38553177 (-) True zgc:77112
XM_039802708.1 mRNA upstream 4536 38662069 ~ 38673892 (-) True ube2d4
XM_039803740.1 mRNA upstream 188154 38845687 ~ 38847953 (-) True zgc:153044
XM_039803762.1 mRNA upstream 709144 39366677 ~ 39394822 (-) False mn1b
XM_039803761.1 mRNA upstream 709144 39366677 ~ 39394822 (-) True mn1b
XM_039803696.1 mRNA upstream 754013 39411546 ~ 39447216 (-) False LOC120560826
unassigned_transcript_272 other downstream 201526 38435418 ~ 38435490 (-) True trnaf-gaa_7
unassigned_transcript_270 other downstream 210243 38426701 ~ 38426773 (-) True trnaf-gaa_5
TU90333 other downstream 1082249 37538187 ~ 37554767 (-) True G67577
TU90329 other downstream 1089706 37538187 ~ 37547310 (-) False G67577
TU90337 other downstream 1092138 37535859 ~ 37544878 (-) False G67577
TU90908 other upstream 756349 39413882 ~ 39425293 (-) False LOC120560826
TU90909 other upstream 756349 39413882 ~ 39425293 (-) False LOC120560826
TU90911 other upstream 756349 39413882 ~ 39425293 (-) False LOC120560826
TU90912 other upstream 770748 39428281 ~ 39447195 (-) False LOC120560826
TU91941 other upstream 1277839 39935372 ~ 39935846 (-) True G68717

Expression Profile