RNA id: XM_039802720.1


Basic Information

Item Value
RNA id XM_039802720.1
length 2266
RNA type mRNA
GC content 0.51
exon number 11
gene id LOC120560335
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 25019069 ~ 25023688 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TAAATAGAAGAAGAGTTCATTCAGCCATTACATTCTCACTTACAGCCAGGTCGAAGCCGCTAGTGGTGGAGGACAGGTCATTAGCAACCCGACAAAATGTTAACCGTGAGAGTTGCAGCAGCTTTGGCCAGGACCCTGCCCAGAAGGGCTGGATTTGTGTCCAAGGCTGTACCGGCCGCCTGCGTTGGGGTCAaccacctccacacacacagaccatgGCTGCAGAAGATCGGCACAGCCGAGGTGTCTTCAATCCTGGAGGAGAAGATCTTGGGAGCTGACACCTCTGCCGACCTGGAGGAGACAGGACGTGTGCTGTCCATTGGTGATGGTATTGCCAGAGTGTACGGGCTGAGGAATGTCCAGGCAGAAGAGATGGTGGAATTTTCTTCTGGACTGAAGGGCATGTCTCTGAACTTGGAGCCCGACAACGTTGGTGTTGTGGTGTTCGGTAACGACAAGCTGATCAAGGAGGGTGACATTGTGAAGAGGACTGGTGCCATTGTGGATGTCCCTGTTGGTGAGGAGCTGCTCGGCCGCGTGGTGGACGCTCTGGGAAATGCCATCGATGGAAAGGGTCCTCTTGGCTCCAGCATCCGTAGGCGTGTGGGTCTGAAGGCTCCTGGTATCATTCCCCGTATCTCTGTGAGGGAACCCATGCAGACTGGAATCAAGGCTGTGGACAGCCTGGTGCCCATTGGCAGAGGCCAGCGTGAGCTGATCATTGGTGACAGGCAGACCGGCAAAACTGCCATTGCCATTGACACAATCATCAACCAGAAGCGCTTCAATGAGGGAACTGACGAGAAGAAGAAGCTGTACTGCATCTACGTCGCCATCGGGCAGAAGAGATCCACTGTTGCTCAGCTGGTGAAGAGGCTGACTGATGCTGATGCCATGAAGTATACCATCGTGGTCTCTGCCACTGCCTCTGATGCTGCTCCTCTGCAGTACCTGGCCCCATACTCTGGCTGCTCCATGGGAGAGTACTTCAGAGACAACGGCAAGCACGCCCTGATCATCTATGATGATCTGTCCAAGCAGGCTGTTGCCTACCGTCAGATGTCCCTGCTGCTGCGTCGTCCTCCTGGTCGTGAGGCTTACCCCGGTGATGTGTTCTACCTGCACTCCCGTCTGCTGGAGAGAGCTGCCAAGATGAACGACAACTTCGGCGGCGGCTCCCTCACCGCCCTGCCCGTCATCGAGACCCAGGCCGGTGATGTGTCTGCCTACATCCCCACCAACGTCATCTCCATCACAGACGGACAGATCTTCTTGGAGACTGAGCTGTTTTACAAGGGTATCCGCCCAGCTATCAACGTGGGTCTGTCTGTGTCCAGAGTAGGCTCTGCTGCCCAGACCAAAGCCATGAAGCAGGTGGCCGGTACCATGAAGCTGGAGCTGGCTCAGTACCGTGAGGTGGCTGCCTTCGCCCAGTTCGGCTCTGACCTGGACGCTGCCACCCAGCAGCTTCTTAACAGGGGTGTCAGGCTCACTGAACTGCTTAAACAGGGACAGTATTGCCCCATGGCCATTGAGGAGCAGGTAACAGTCATCTATGCTGGTGTCAGGGGTCACTTGGACAAGATGGAGCCCAGCAAAATCACAAAGTTCGAGAAGGCTTTCCTGCAGCACGTCCTCAGCCAGCACCAGGACCTGCTTGCCGCAATCAGaGCTGAAGGCCATATCTCAGAGGCATCAGATGCTAAACTGAAGCAGATTGTACTGAGCTTCCTGTCTAGTTTTGAGTAATGGATAGCACTTCTCTTGATCTTCAGTGAGCTACCTGTCTGTGTCCCCATTATGCTTATACATGTGAACACACTGAAGGCCAAAACCTCCATGTACAGATTTCTCCAAATAAAATTTTACAACCCTAATGAGCTGTAAAATTCTTCTGATTGTGCGCTTAACTACCGTAAGTTAAGTTTGTGAGCTGTGAGCAGATTTCACCAGTGGCAGAAAAGTAATACAAACAATACTTTTCTTTAAACGCATCTAATGTGTAATTTGAGTATTTTAGTGTACCAAAATATAAAGGTAACGTGCATAACGGGCCGCATACCACAGTCTTTAATTCTGTTTACTGTAACAGTTGTTCATAAGCGCATTATATTTAAGAGGGCAAATGAGTGTTGAGAAGTGTCTGTTTTGCTCCTCACTGTTTTCAGAGGATGGAAGGACTGTAGGCCCAGTTTCTCAACTGTGGGTGAACTGTTTGATACTATGGTAATAAATTCAGTGACACTGTCACACATCAAATCCA

Function

GO:

id name namespace
GO:0006200 obsolete ATP catabolic process biological_process
GO:0015986 ATP synthesis coupled proton transport biological_process
GO:0045261 proton-transporting ATP synthase complex, catalytic core F(1) cellular_component
GO:0005524 ATP binding molecular_function
GO:0046933 proton-transporting ATP synthase activity, rotational mechanism molecular_function
GO:0046961 proton-transporting ATPase activity, rotational mechanism molecular_function

KEGG:

id description
K02132 ATPeF1A, ATP5A1, ATP1; F-type H+-transporting ATPase subunit alpha

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU86090 lncRNA upstream 126552 24876562 ~ 24892517 (+) True G64287
TU86081 lncRNA upstream 156339 24860249 ~ 24862730 (+) True G64279
TU86075 lncRNA upstream 196018 24822491 ~ 24823051 (+) False prxl2c
TU86072 lncRNA upstream 196721 24821314 ~ 24822348 (+) False prxl2c
XR_005639412.1 lncRNA downstream 11021 25034709 ~ 25040898 (+) True LOC120560056
TU86234 lncRNA downstream 186236 25209924 ~ 25210170 (+) True G64392
TU86313 lncRNA downstream 236028 25259716 ~ 25302920 (+) True G64450
TU86352 lncRNA downstream 482476 25506164 ~ 25506568 (+) True G64489
XR_005639499.1 lncRNA downstream 524335 25548023 ~ 25552264 (+) True LOC120560635
XM_039804131.1 mRNA upstream 18605 24974336 ~ 25000464 (+) False loxhd1b
XM_039804133.1 mRNA upstream 18605 24974347 ~ 25000464 (+) False loxhd1b
XM_039804130.1 mRNA upstream 18605 24974348 ~ 25000464 (+) True loxhd1b
XM_039804132.1 mRNA upstream 18605 24974348 ~ 25000464 (+) False loxhd1b
XM_039804129.1 mRNA upstream 56591 24958162 ~ 24962478 (+) True ptger4a
XM_039802788.1 mRNA downstream 56619 25080307 ~ 25088646 (+) True ostf1
XM_039804582.1 mRNA downstream 84269 25107957 ~ 25139788 (+) False atxn2
XM_039804587.1 mRNA downstream 84269 25107957 ~ 25139788 (+) False atxn2
XM_039804585.1 mRNA downstream 84269 25107957 ~ 25139788 (+) False atxn2
XM_039804580.1 mRNA downstream 84270 25107958 ~ 25139788 (+) True atxn2
XR_005639471.1 other upstream 184438 24823718 ~ 24834631 (+) False cdc14b
XR_005639472.1 other upstream 184449 24823719 ~ 24834620 (+) False cdc14b
TU85875 other upstream 1325778 23692662 ~ 23693291 (+) True G64108
TU85622 other upstream 2088864 22929899 ~ 22930205 (+) True G63905
XR_005639510.1 other upstream 3420270 21588876 ~ 21598799 (+) False LOC120560787
TU86491 other downstream 661284 25684972 ~ 25696570 (+) False LOC120561182
TU86550 other downstream 890694 25914382 ~ 25915529 (+) False LOC120560031
TU86770 other downstream 1389181 26412869 ~ 26414597 (+) True G64814
TU86790 other downstream 1470647 26494335 ~ 26496386 (+) False c6h22orf39
TU86791 other downstream 1470647 26494335 ~ 26496328 (+) False c6h22orf39

Expression Profile