RNA id: XM_039802730.1


Basic Information

Item Value
RNA id XM_039802730.1
length 1632
RNA type mRNA
GC content 0.47
exon number 8
gene id zgc:113436
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 8922283 ~ 8933253 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CGCATAAATGCAAAAGtagaagaagagaaaggagaCAAGCACTAGCGTTGTATCTTCATACTGATGTGGGTTTGCTGTGGATTATGAGTCTTcgttagcagtagctagcacTGCTGCTAAATATGTGGATTGACAGTCAGCATTCTTTTGCTTATTGAGGTTTATACTCGCGGTCTATTGTACTAACTGTAAAGTCTAAGCGGAGATGTTAAGCGTGGAGTCGTTGCAAGTGGCTGAGGAGGAGGTGGTTGAATCCAGCTCCAATAAATTCGGTGACATTTACACTTTCGTGGCTAAAGGCTGCTTTCCTCAGACGATGAATCCTTTACGAAAGAAGAATCTCAAAAGATACGCACAGAAATTTATCATTGATGAGGGCAAGCTGTACTATGTGGGACccaagaaagaagagaaaagggaGGTGGTGATCGAGGCTGAGAGGAAGAGGCAGATTTTTCTCGACTGCCACTTCAATGACATCGGTCATCACCTGGGCCAAAAGAAGACCGTCCACAGGATCCAGAGCAAGTACTACTGGCTGGGGATCATCAAGGATGTTGTGGATTGGATAAAAGTATGTGAGACCTGTCAGCACACAGAGAGGAATAAAAACCTGGCAAGGACTGTCCGGCCTATAAAAGTGGACGCACCTTGGGATATTGTTGGGATTGACATTATAGGGCCTTTCCCAGAGACACAGCAAGGCAACACCAGTGTTGCAGTCCTCATTGATTACTTTAGTAAATGGCCAGAAGCTTTTCCAGTGCAAAAGACAGATGCTCTCTCTGTTGCAAGATGTATTTCCAAATGCATATACAGGTTCGGTGCCCCTAAAACAATAGTGTGTACACAGAATGCAGACTTCTGCGATGAGGTGACAAAGCTGCTATGCGACAGGTGGAGCATCTCGCAGAAGGTGTCTCCTCGGGATCAACCTCAGCTCAACCCGCTCCACGACTGCACCAGTCCGTTACTGAAGGAAGCCATTGTGCAGATGGTGACGGACAAGCAGGCTGAATGGGATGACTTCCTGGACCCTGTGCTGTTTCTGCTCCGGACGTCCACCAACCCTACCACTAAGTTCAGCCCTTACTCCCTCATGTTCAACAGGAAAGCTCATTTACCCAATGAGACTACATTGAGCCTGCTGAACTATGACGACCAAGAGCAGGACATGTATTCCACAAAGGAGAAGGCCTCAACGTATATGACCATAATGCAGGAGCAGCAGAACTCTGTGAAGCAGCTGgTGATAGCCAATATGAACGCAGCCtacaaagaagagaagaagaagaatgtcaAACGCAGGACACATAACATGCCCTCAATGACATTTAAAATCGCAGATCCTCTGTTCGGCGCAGGAGACTCGCCCTCACCAAAAAAACTGAAAGACAGTTTGTATTTATCTTTTCCTGTTGAGACggtgctggccactgagcaaaGCAGCGCAGAGGACATGAAGACGGAGTTAGCGTATCACTTAGCTGAATCTGACGTACACTGAGGAGGACCGTTGAACAAGCACAGTAGAGTGGACGGATCAGTGGAGCATGACTACATGTTGTCATGAGCTTCCTTGAAGTCTTGGACAAAAGATGGAAATCCAGATGTTGTAAATATGTGATTATG

Function

GO:

id name namespace
GO:0015074 DNA integration biological_process
GO:0003676 nucleic acid binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU80840 lncRNA upstream 65853 8833627 ~ 8856430 (+) True G60229
TU80828 lncRNA upstream 137363 8784653 ~ 8784920 (+) True G60223
TU80806 lncRNA upstream 190361 8731713 ~ 8731922 (+) True G60201
TU80794 lncRNA upstream 274834 8647221 ~ 8647449 (+) True G60189
XR_005639469.1 lncRNA upstream 323895 8597542 ~ 8598388 (+) True LOC120560290
TU80917 lncRNA downstream 32252 8965505 ~ 8989713 (+) True G60275
TU80913 lncRNA downstream 56565 8989818 ~ 8990590 (+) False G60273
TU80914 lncRNA downstream 56565 8989818 ~ 8991004 (+) True G60273
TU80912 lncRNA downstream 80098 9013351 ~ 9014895 (+) False vps37ba
TU80925 lncRNA downstream 117890 9051143 ~ 9055635 (+) False ppp3cca
XM_039802727.1 mRNA upstream 14559 8861970 ~ 8907724 (+) True slc4a5a
XM_039802728.1 mRNA upstream 14559 8861970 ~ 8907724 (+) False slc4a5a
XM_039803061.1 mRNA upstream 85310 8810554 ~ 8836973 (+) True zgc:110329
XM_039803055.1 mRNA upstream 440105 8465171 ~ 8482178 (+) True LOC120560486
XM_039802098.1 mRNA upstream 487611 8432952 ~ 8434672 (+) False LOC120560007
XM_039803657.1 mRNA downstream 6576 8939829 ~ 8965106 (+) True LOC120560802
XM_039803062.1 mRNA downstream 39033 8972286 ~ 8989363 (+) True LOC120560490
XM_039803658.1 mRNA downstream 58188 8991441 ~ 9014903 (+) True vps37ba
XM_039803659.1 mRNA downstream 84638 9017891 ~ 9055765 (+) True ppp3cca
XM_039803661.1 mRNA downstream 84638 9017891 ~ 9055765 (+) False ppp3cca
unassigned_transcript_250 other upstream 468413 8453799 ~ 8453870 (+) True trnaw-cca_8
unassigned_transcript_249 other upstream 470739 8451473 ~ 8451544 (+) True trnaw-cca_7
unassigned_transcript_248 other upstream 473068 8449144 ~ 8449215 (+) True trnaw-cca_6
unassigned_transcript_247 other upstream 474267 8447945 ~ 8448016 (+) True trnaw-cca_5
unassigned_transcript_246 other upstream 475432 8446780 ~ 8446851 (+) True trnaw-cca_4
unassigned_transcript_251 other downstream 279989 9213242 ~ 9213313 (+) True trnaq-cug_4
TU81099 other downstream 993697 9926950 ~ 9953239 (+) False LOC120560959
XR_005639542.1 other downstream 993796 9927049 ~ 9981054 (+) True LOC120560959
XR_005639543.1 other downstream 993796 9927049 ~ 9981054 (+) False LOC120560959
TU81096 other downstream 993854 9927107 ~ 9980989 (+) False LOC120560959

Expression Profile