RNA id: XM_039802732.1


Basic Information

Item Value
RNA id XM_039802732.1
length 2491
RNA type mRNA
GC content 0.55
exon number 11
gene id sh2d3cb
representative False

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 34774749 ~ 34805947 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTTACATATTCAAACATGAAATTTCCGCAaacttgtaataaaaaaaactaattgtaTTACCTTAGGTAATAAACTGGGAGCGTTTCGGGGGATGTTTGTTCAACTGTAGTAGGCTTTAAAACAGCCAACATAGTAGTTGTTGCAGCGGACATGCGCAGTGCGCTCCCTGCCTGCCCGCTGTGGTCCAGTCGGTTAACTGGTTCACACACTCAGCGGCAGAGCGTCTCTGACTGTGCGGGAGAAGATGTGTGAAGTTGGGGACGTTAGCTGTCGGACAGCCCGCTGCGGCGAGCGAGATATAAGtaaGCAGGACTTGACAGACAGCAGTGGAGAATATGTGAAGTTCTCCAAAGACAAGTTCTGGTTGGAGCCACCGTCGGAGAAACTGAAGaagcagctggaggaggagctgaAGCTGAGCGGCAGCAACCTGAAGAGCCACGCCTGGTACCACGGACCGATCCCCTGGGAGGTGTCCGAGAGTCTGGTCGTAAATCCCGGTGACTTCCTCGTCAGGGACTCTCAGTCAAGCCAGGGCGACTTTGTCCTCACCAGCCACTGGGAGAAGAAAACACTTCACTTTGTCATCAGGAAGACGATGGTTCAGTCCGGTGAGACATACACTCGGGTCCAGTACAGCCTGGAGGACGAGGCCTTCGACTCTTTACCGGCTCTTGTTCATTTCTACGTGGGGAGCAAGGCGGCTCTGACCCGGTGGAGCAAAGCTCAGATTCACCGGCCTGTGAACAGGACGCTGCCTCTCAGCTACCTGGAGACATCCTTCTGGACCGCCGTCAGCCCCCCGTCCTGTCACAAAGGGCTAAAAAATGGCAGCGTGAGCGGAGAGGAGAGGGTCTGTCCCAGAAGTCCTTCATTTCTGCACCACAGGGAGGCCGATGTACACAGGGAACAGGATGAGCGGCTTCTGATGACTGCTGGAGAATCCTCTGTCTCTACTCTGTACAACACCCCACAGTCTAGAAGCCCTAACAGTAGCCGGGCAGCCAGCGTGGCTCCATCCCCGTCCCTCTCCAGGCGCTTTGATACCGGCCGACCCCTGTCCTCTCCCAAAAGCACCCTCCGCAGACAGTGTAACAACAGACCCCAACCTCTTCTGAACCAGGACTCCCCGTCCTCTGATGCTGGTGGAAGCTGCTACACAGAGCTGCACCCTGGCCCCCACAGCTACGTGGAGAGGCTGCGGGTGGAGGAAGGGTCAGCGGGCATCGATCAGCTGAGGTTGGAGGACGGGAACGTGTACTTCTCGCCAGTGGTGGAGGCGGTCTCGTCTTTCAAACCGAGCAGGTATCTGTCGCCGCTGATGCCCAAGGAGAATAAGCCTTTGGAAGTGGGCATCCTGCGGAGAGTGAAGGAGCTGCTGGCAGAGGTCGACCCCAGGACAGCGGCCAAACAGATCACCAAGGCTGACTGCATGGTGGCCAGAATTCTGGAGGTGACCCCGGAGGTGCAAAGGATGATGGGAGTTAGTTCTGGGATGGAGCTGCTTACGTTACCACATGGCACACAGTTAAGACTGGACCTACTGGAGAGGTTCCAAACCATGGCGATCATGCTGGCTGTGGATGTGTTGGGCTGCACAGGGACGACTGAGGAGCGGGCCGGCCTGCTACATAAAATCATCCAAATCGCAGCTGAGCTCAAGAGCACCATGGGCAACATGTTCGGGTTTGCTGCCTTCATGAGAGCTCTAGAGCTGCCGCAGGTGTCTCGTTTGGAGCAGACCTGGACGGCGTTACGGCAGCGACACACAGAGGGGGCTATTCTCTACGAGAAAACTCTGAGGCCGTTCATGAAGAGCCTGAATGACGGGAGAGAAAGCTGTCCGCTGTCCAGCACCACCTTCCCCCACGTCCTACCCCTCCTGTCTCTGCTGGAGAAGAGCATAGCGGTGGGTGAGGGGACAGAGCCGTGGGAGACGGTGGAAGTCGGGGTGGACGTGGTCATGTTCCACCTGGGGGCGGCGAGGACCATCGCTCAGCTGGGGGGCATCTACCGCTCCAACGCTGAGAGCAAACTGCAAGGATTCCAGGAGCAGGCGGAGATCCTGGAGCTCTTCCTGACCGACTTCCAGATGAGGCTGCTGTGGGGGAGCAGGGGAGCCGAGGAGAGCCAGGATCTGCGATACGCCAAGTTTGACCAGGTGCTGACAGCCTTGTCCAACAGGCTGGAGCCGCCTGTACGACCGTGCTGACCCAAGACCTGTTTTTAATGGCTTAGTTTATCCGGGATGAGCTCAGAAACACATAGATGCAGATGATGGTGGAGGCACTGGAAGTATAAAGTAAGACAGCACCCTGGAGGACAGAAGAGGCAAACCGAGAAGCTACAAAATGTACAGTTCAGCTCCTgctttggtgctttttttcccaaactgtattttcatttaccAAAATCTAtattctttttaatatttttttgggcttttctgcctttaatggataggacaggtgagaaaggggagagagagaga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU89323 lncRNA upstream 265136 34508142 ~ 34509613 (+) True G66769
TU89226 lncRNA upstream 287998 34486538 ~ 34486751 (+) True G66695
TU89223 lncRNA upstream 318000 34456490 ~ 34456749 (+) True G66692
TU89217 lncRNA upstream 334821 34430942 ~ 34439928 (+) True G66689
TU89177 lncRNA upstream 492820 34187830 ~ 34281929 (+) True G66652
TU89399 lncRNA downstream 9642 34815589 ~ 34816327 (+) True G66830
TU89406 lncRNA downstream 22945 34828892 ~ 34829654 (+) True G66834
TU89403 lncRNA downstream 55552 34861499 ~ 34864690 (+) True G66832
TU89494 lncRNA downstream 194331 35000278 ~ 35002196 (+) True G66907
XR_005639572.1 lncRNA downstream 449714 35255661 ~ 35258072 (+) True LOC120561203
XM_039804034.1 mRNA upstream 943 34765930 ~ 34773806 (+) True LOC120561070
XM_039802646.1 mRNA upstream 182033 34588133 ~ 34592716 (+) True LOC120560310
XM_039803766.1 mRNA upstream 211598 34551118 ~ 34563151 (+) True p2rx7
XM_039803765.1 mRNA upstream 239044 34527409 ~ 34535705 (+) True gstt1a
XM_039803764.1 mRNA upstream 248650 34514010 ~ 34526099 (+) True cfap157
XM_039802045.1 mRNA downstream 3137 34809084 ~ 34814495 (+) True tor2a
XM_039804035.1 mRNA downstream 79591 34885538 ~ 34895629 (+) True LOC120561071
XM_039804036.1 mRNA downstream 145555 34951502 ~ 34952477 (+) True LOC120561072
XM_039804547.1 mRNA downstream 240897 35046844 ~ 35059631 (+) True LOC120561428
XM_039804548.1 mRNA downstream 240897 35046844 ~ 35059631 (+) False LOC120561428
TU89395 other upstream 1049 34765946 ~ 34773700 (+) False LOC120561070
XR_005639528.1 other upstream 247344 34514010 ~ 34527405 (+) False cfap157
TU89079 other upstream 998351 33775925 ~ 33776398 (+) True G66578
XR_005639474.1 other upstream 1661933 33077246 ~ 33112816 (+) False cds1
unassigned_transcript_266 other upstream 2202990 32571688 ~ 32571759 (+) True trnap-ugg
TU89401 other downstream 55552 34861499 ~ 34864266 (+) False G66832
TU89402 other downstream 55552 34861499 ~ 34864266 (+) False G66832
TU89404 other downstream 55552 34861499 ~ 34864266 (+) False G66832
TU89504 other downstream 240908 35046855 ~ 35059618 (+) False LOC120561428
XR_005639497.1 other downstream 716718 35522665 ~ 35547463 (+) False LOC120560625

Expression Profile