RNA id: XM_039802739.1


Basic Information

Item Value
RNA id XM_039802739.1
length 1403
RNA type mRNA
GC content 0.48
exon number 5
gene id ccdc157
representative False

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 183677 ~ 187344 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGTGATGCCAACAAGCTACACCTACTTGCTCTCAGTGCTATTTCAGGCAGACATAAATATAAGCTAGTTTGTCAGATATGAGTGAGTTCTTGGGTCGTCAGGACAGTATCGAAAGCCTCCGAAAAGACGTCGTCGACCTTCAAGGTGCGATTCTGGACGTCTTTTCCAGAACCGGACCGGTCCGTTTCTCCTCCTGGAAGTTCCCCGATAAACTTTCATGTAATCTGGACATGTTAGCTCTACTGGAGCAATATGACTTTGTGGATGGGGAGGATGCGTTCAATCAGCACTCCCACATTGTGTTATTGGAGCTGGTGATTGACAGGCTACTACTTCTTCTACAAAGCTTTAATGCTTATGTTGAGCAAATCAGGTGCAGCCACAGGAGAGAACAAACCCAGCAGAAAGGATGCCTGTCAGTTGGTCTTGTAGTCAGAAACTACTGGAGTAATTTAGTTCAATTTGCCAACCTAAAGggGACATACAAAGATATCAAGAAGCAGACAAAAGCAAAGACATCTGACTGTGAAGGGACAGAGACGGTGTCATCAGTCTCCCCCCAAATGAGCACAAGCAGACATTGCTTATCTGCCTGCTCTTCAACAAGCTCCTTAAAGTTTTTGCCGCAGACACAAGTACCCTCCAGTGCTACCCACAACACCCCATGCTATTCTAAAGTTGACAGCCACAATGTAGGCTGCCAGACTATTAAATCATCCCTTGTACCCTGCAATGCGTGCCACCAAGTGCAATCCACTTTGATAAAAACAGGACATGCTTTGCTAGAACTTCTTCAGAGTGAGAGCCTGCCCTCATCTCTGCAGCCACTTTTAGTAGCTGTGGAAGACACCCTGGAGCTGGGACATATGACAGCCGGCGATGTCGCCCAGTGGGCCAGTGAGCAGCTCAAAGACATGCGCCGGCTGGCAAAGCATCTTCAAGACGTGCGGGGTACTGTGCAGCCTCTTAAAGAACGACTAGCGTCAGCAGAGGCAGAGCGGGAGAGATTCAGGACTCAGCTGGAAAGAACACAGAAAGAGTTCAAGCAAGAGTTGGAAAACCACCAAGCAAACATGGTCCAGCTGGAGTTTTCGCTGAGGAAGGCACAGAGATCCGCGAAAGAAACAGAGCAAAGGCTACAAGAGGAGCAGCGACAACTCAAGAGAGAAACGTTGTGCTTGGAGGAGACTAATTCCAGACTGAAAGAGAAATTTACAGTACAGCAAGATGCATTAAAAGCACTTGGACAAAGTGAGGACCTTGCACATGGAGGAAGAGGCCTGTTGTAAACTACAGCAAAGGGTCCAGCAGTTAGAGAGTCAAATCTCTGAAACTCAACTCCGTCTTGACAAAGAGAATGCCAAGTACCACAGCGCTTGTCGTCAGCAAGAGGTCAGTGTCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU77970 lncRNA upstream 57414 121847 ~ 126263 (+) True G57994
XR_005639491.1 lncRNA upstream 73616 108566 ~ 110061 (+) True LOC120560560
TU77921 lncRNA upstream 166760 15528 ~ 16917 (+) True G57961
TU77996 lncRNA downstream 23769 209281 ~ 210676 (+) True G58011
XR_005639514.1 lncRNA downstream 25244 210756 ~ 212383 (+) False LOC120560799
XR_005639515.1 lncRNA downstream 25244 210756 ~ 212383 (+) False LOC120560799
TU78015 lncRNA downstream 60379 245891 ~ 252072 (+) True G58021
TU78020 lncRNA downstream 72056 257568 ~ 259697 (+) True G58024
XM_039803187.1 mRNA upstream 84173 79632 ~ 99504 (+) False LOC120560558
XM_039803649.1 mRNA downstream 27524 213036 ~ 216499 (+) True LOC120560800
XM_039804134.1 mRNA downstream 37629 223141 ~ 242641 (+) False LOC120561159
XM_039804136.1 mRNA downstream 37845 223357 ~ 244194 (+) False LOC120561159
XM_039804135.1 mRNA downstream 38144 223656 ~ 244194 (+) False LOC120561159
XM_039804139.1 mRNA downstream 38144 223656 ~ 240844 (+) False LOC120561159
TU78000 other downstream 25230 210742 ~ 212370 (+) True LOC120560799
TU78001 other downstream 25230 210742 ~ 212370 (+) False LOC120560799
TU78941 other downstream 2692889 2878401 ~ 2879744 (+) False lman2lb
TU79382 other downstream 3931767 4117279 ~ 4117631 (+) True G59086
TU79482 other downstream 4238629 4424141 ~ 4429981 (+) True G59172

Expression Profile