RNA id: XM_039802741.1


Basic Information

Item Value
RNA id XM_039802741.1
length 8554
RNA type mRNA
GC content 0.54
exon number 57
gene id gcn1
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 8235559 ~ 8272303 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCAACAAGTCCTTCCTGTATCAAGACCGGCAAGATGGCAGCGGACACGCAGGTTTCAGACACACTGAAGAAGTTTGCTGTAAAAGTGACTACAGCCAGTGTGAAAGAGCGCAAGGACATATTCGGGGAGCTGAAACGGTGTATAAAGGGCAAAGAGTTACCAGAGCCTGCCATCAAAGGATTATGCAAGCTCTTCTGTCTCACTCCAAACAGATATCGGGATGCTGCGTCACGCAGAGAGGTCCTCTCTGTTATCGCCCAGCTGGCTGACAGTCAGCCTGACATCCTGGTGACCGGCCTCCTCCACTGCTTGCTGAACAGTGGAGTCGTCAGCAAAAATGGAGAGCCCAGCAAAAGCACAGGCTCTGCTGCCTTCATCAGCTTGTCTTGGACCTGCCTTTTAGTCCCCCGTGTGTTTTCTGCCCCAGAGAAAAAACAAGGACCCATCTGGAAGAAAATGGTGGAGGTTCAGAGCCTTCTCGTAGCTGAGGTGGTGGGCGGAGCCAAGACCACGGCTCAGAAATCAAGCCTCAAGAATCTCAGTCACCTCTGGAAGGAAAACCCTGGACTGGTCGATGAATACATCAGCACACTGTTGAGTCTGGACCAGAGCCCCACTACTCTGGCCATGCTGGGGGTGTGTTTAGACTTCTGCACTGCTCAGAAAGACAAAGCTACAATAGAGAAGCACAAGagtGCCCTGTTGGACCTGTACATAAAATCAGTCCTTATGAGCAAGACAAAACCATACCAGCACATTTTGGACAAAAGTGGCTCCTTCCTGCGTCACGTGTCCCACTCTGAGTTCAAGGAGCTGCTGCTCCCTGCACTGCAGAAGACAATGCTCCGAAGTCCAGAGAACGCTATGCAGACCGTTTCCTGCATGCTGTTGGCTGTAACTCTCGACCTCAGTCAGTACGCCATGGATATCGGAAAGGCCATCGCAAGCCAGCTAAAAGCTAATAATGCCGAGCTAATGGAGCAGGCGGTCCAGGCCATGCAGAACCTGGCACAGCAGTGCAGTGATCCCTCTGCTGTGCAGGACATCGTCACTCACCTCTTTAAGATCCTCGGAGGGTCTGAGGGAAAGCTCACAGTTGTTGCCCAAAAGATGAGTGTGTTGTCAGGGATTGCCAGCTGCAGCCATCATGCCGCATCAGGAACCTCCAGCCAGACTCTCAGCTCTGCAGTCACTGTGATGTTCATCCCTTATTTACAACAAGAAGttcaCGAGGCTACCTTGGTGCATGCAGTGTCTGTGCTCTCCCAGTGGAGCAGTCGTCTCACAGTGGAAGTTCCCACCGCTCTGCTGGATTGGTTGAAAAAAGCTTTCACCCTCAAGACCTCCACCTCTCTGGTTCGACACGCCTACCTTCAGGCCATGCTGGGGGCCTTCAAAGGTGACACTCTGGCCCAAGCTTCAGATCTCGTGCCCTTGCTCCTCCAAACAGTGGAGAAGGCTGCGGCACAAAACTCCCAGCATGCTCTGCTTTCCGAAGGTGTGGCAGCTTCGGTTCTTTTGAGTCGACTAGCACTGCTGGAGACACAGACGGAGGCTAAGCTTTCCAGCTTTTGGAACCTGATCTTAGATGAGAAGAAGCCACTTTTCACCACAGAGAAGTTCCTCTCCCAGGTCAACGAGGAAACTCTGCTCACAGTGCTGTTGCTCTGTGAAAGGCTCCTCCTGGACCATCATCATAGGCTTAACACCAGCAAATCCCAGATGTATCATCACGCCACAGTTGCGGTTCTGCTGTCTCGGAGCTGGCGTGTGCGGAAGCGGGCCCAACAGACAATCAAGAAGCTGCTCTCCTCTCTGGGTGGATCCAGTCTTGCCCATGGCCTCCTGGGAGAACTTCGCGTGGTCATcaataaacacaaaGTTTTGCCCCAGGATGTCCTGGTatcagagtcaggagagctgaCTGAGCTGGGTCGCGGCTACATTCCCCCTCGTATCCTGCTGGACGCGCTGTGTGTTATTTGCTCCTCTGCCAGCCAATGGGGCGACCCCACCGAAGCAGAGAATTTGGCCATGGAGATCCTCATAGTCACACATCATCCATCCATAGTTGGAGCTCGCAGCGGCCTCTGGCCTTTTCTGCTCCTCTCCATGAACATTAAAGCAGAAGAATTTATAGAAAAGAATCTGGAGGCTATTCTGCCACATCTACTGGAGGTCAATGCTGACAACCAGGCGGTGAAAAATGCGGTCGGTGCCCTCTCTGGCCTCTCGCCCAACAAGCTGTTACCGCGGGTAATCAGTCACGTCAGCGAGGGACTGTCCCGACCCGCTCTACTTCAGGTCACCAGGGAGGAGTATGCCATCATGCAGACACCTGAGGGAGAACTGTACGACAAGAGCATCATCCAGAGTGCCCAGAAGGAAAGCACCAAGAAGGCCAACATTAAGAGAGAGAACAAGGCCTACTCCTACAAGGAACAGATCATTGAGCTGGAGCTACAGGAGGAgcttaagaagaaaaaaggcaTCAAAGAGGAATTGCAACTAACCAGCAAACAGAAGGAGATGATGCAAATTCAGCTGGAAAAAGAGGCCGCTATTCGCAAGAGACTCCAAGGGCTGGATGTGGAGTTGCAGGGCGTGGTGGGTCTGCTGGAAGCCACTCTGAAAGAAAGACCACCTCAGATCACCAGGGAGCTCCCTGCTGTCCTCCAGGTCCTAATACCCCTGCTACAGTCCCCTCTGGCTGCTCCATCCATCCAGCAAGTCTTCTTGGACATCGTAGTGTGCCTCATGCCCAAACACTTTGAGTTTCTAGcCGTGCTTGTTGGACATGTGACTTTACGGTTGCTGAAGCCAGAGTGTGCTCTGGATGAGGCCTGGGAACAGGAGGACCTGGAAACGGCAGCCCACCGCACCatactgctgctgcacaaccacACTGTCCCACAGAGAGATGCCAAGAACGACGTGGCTCCACTGTCCGCCCCTGCTTTCTCCGTCTGCTTCCCTCTCCTCAACGCCATGCTCAGGGAGTTTTCAGGCAGCACCGAGGAGACGGAGAACATGATGACCAGAGCCTTGCAAGTCATCACCGTACACTGCCAGCTTCGGGCCGCCACAGACATGGATGACCTTGTTATAGACGAGGACGGCCCAGAACTGCTTCCACGTGTcagcatgctgctgctgctgacgaGAATTATTGCCACAGCCACCCCAAGACTCCAGGTGTTGGCGTCTCAGTGCCTGACAGCGCTGTGTGCCAgtgctggaggaggagagggctgCACTGTGGCAGAGCAGCCAGAAATAGACGTCCTGCTCAACGCCCTCCTTTCACCCTGCTTCTCTGTCCGGGATGCTGCCCTCAGGGGATTGTTGGAGATGGAGTTTGCCCTTTCCACAGACAGCACAGAGGCCAGCGGGCTGAGTTTGCTGCGCAGGCTTTGGGTGTGCAGGTTTGACGTTGAGGAGGAGGGCCGAACCTTGGCTGAAAAACTGTGGGAATCTCTGGGTCTGGAGGTGGTCCCTGAGCTCTGCTCCCTGCTGATCGGAGACGTCACCCACCACGAGGAGGCTGTCCGTTCTGCCGCAGCCGAAGCTCTGTCAAGCGCCGTGTCCCAGTACAAAGACCAGTCTGCCACAGTGCTGGGCCAACTCACTGAGCTCTACCACCAGAAACTCTATagaccACCTCCTGTGCTGGATGCCCTGGGCAGAGTCATCTCTGAAGCTCCTCCTGACCAATGGGAGGCCAGGGGTGGCATCGCTCTGGCTCTGAACAAGCTGTCGCAGTACCTGGACGAATCTCAGGTCAcccccctcttcctcttctttgttCCTGATGCTCTGAACGACCGCCACACTGAGGTGCGGCGCTGCATGCTGGACGCAGCCCTCTCTGCGCTCAACACACACGGAAAGGACAATGTGAGCTCCCTGCTGCCAGTGTTTGAGGAGTTTCTGAAGGACGCCCCTCAGGACGCCAACTACGACGCTGTCCGTCAGAGTGTGGTTATTCTCATGGGCTCCTTGGCCAAACATCTGGATAAAAATGACCCCAAGGTCAAACCCATCGTGGCCAAGCTCATCACTGCACTCTCTACACCTTCACAGCAGGTCCAGGAGTCTGTGGCCGGCTGTTTGCCTCCGTTAGTCCCCGCCATCAAGGAGGACGCTGCGGGCATTGTAAGGaacctgctgcagctgctgctggagagCGACAAGTACGCAGAGAGGAAGGGGGCAGCGTACGGACTGGCTGGCCTGGTCAAAGGTCTCGGGATCCTGGCGCTCAAACAGCAGGACATCATGACCACGCTGACCGACGCCATCCAGGACAAGAAAAACTTCAGACGGAGGGAAGGAGCGCTCTTTGCCTTTGAGATGCTGTGTAACATGTTGGGGAAGCTTTTTGAGCCGTACGTGGTCCATGTGCTGCCACACCTCTTGCTCTGCTTTGGAGACGGAAATCAGTATGTCAGAGAGGCTGCAGATGACTGCGCCAAGGCTGTGATGAGGAACCTGAGCGCCCACGGGGTGAAGCTGGTTCTTCCCTCCCTGCTGATGGCTCTAGAGGAGGAGTCCTGGAGAACTAAAGCAGGCTCTGTGGAGTTGCTTGGTGCCATGGCTTTCTGTGCACCGAAGCAGCTGTCCTCCTGTCTGCCCAGCATCGTGCCCAAGCTGACTGAGGTGCTGACCGACTCCCATGTAAAGGTGCAGAAGGCCGGCCAACAGGCCCTCCGACAAATCGGCTCTGTCATCCGCAACCCCGAAATCCTGGCCATTACCCCCATCCTACTGGACGCTCTCACTGAACCGTCCAGGAGGACCCAGACGTGCCTGCAGACGCTGCTGGACACCAAGTTTGTCCACTTCATCGACGCCCCCTCCCTGGCCCTCATCATGCCCATCGTCCAGAGAGCCTTCCAGGATCGCTCTACCGACACTCGCAAGATGGCCGCTCAGATCATCGGCAACATGTACTCCCTCACTGACCAGAAGGATCTGTCACCCTACCTGCCTAGTGTTATTCCTGGACTGAAGGCCTCCCTGTTGGACCCGGTGCCTGAGGTACGTACAGTCTCAGCCAAAGCCCTGGGCGCCATGGTGAAGGGGATGGGTGAATCCTGCTTTGATGACCTGCTGCCGTGGCTCATGGAGACCCTGGCCTCCGAACAGAGCTCCGTAGATCGCTCTGGAGCTGCACAAGGTCTGGCTGAGGTGATGGCTGGACTGGGAGTAGAGAAGCTGGACAAGCTGATGCCAGATGTGGTGCAAACAGCCAGCAAGGTAGACATCGCCTCCCACGTCAGAGACGGCTACATCATGATGTTCATCTACCTGCCTCTCACCTTTGGAGACAAGTTCACTCCCTACGTTGGGCCCATCATCCCCTGCATTCTCAAGGCTCTGGCTGATGAGAATGAATATGTGAGAGACACAGCACTGCGAGCCGGCCAGCGAATCATCAGCATGTATGCTGAGACTGCCATCGCTCTGCTGCTTCCTGAGCTGGAACAGGGCCTGTTTGATGACCTGTGGAGAATCAGGTTCAGCTCTGTGCAGCTTCTTGGAGATCTGTTGTTCCATATCTCTGGAGTGACAGGAAAGATGACCACAGAGACCGCTTGTGAGGATGACAACTTTGGAACAGCTGCATCCAATAAAgctATCATTGGAGCTCTTGGTGCTGAGCGGCGTAATCGTGTCCTCTCTGGCCTCTATATGGGCCGTTCAGACACTCAGCTGGTGGTTCGACAGGCTTCCCTCCACGTGTGGAAGATCGTGGTCTCCAACACCCCCAGGACTCTTCGAGAGATCCTCCCAACCCTCTTCACTCTCCTGCTGGGCTTCTTGGCTTCCACCTGCCCTGACAAGAGAACGATCGCTGCTCGGACGCTGGGTGATCTCGTGAGGAAACTGGGAGAGAAGATTCTCCCTGAGATTATTCCCATCCTGGAGGAGGGCCTGCGCTCTGACAAGAGTGACGAGAGGCAGGGAGTCTGCATCGGCCTCAGTGAGATCATGAAGTCCACCAGCAAGGATGCGGTGCTGGTGTTCTCCGAGTCGCTGGTCCCCACAGTGAGGAAGGCTCTCTGTGACCCGCTGGAGGAGGTCCGAGAGGCTGCAGCCAAAACCTTTGAGCAGCTTCATGCAACCATCGGTCACCAGGCGCTGGATGACATTCTGCCTACCCTGCTCAAACAGCTGgATGACGAGGAGACAGCTGAGTTTGCTTTGGATGGCCTGAAGCAAGTCATGGCGGTGAAGAGTCGCTCTGTGCTGCCTTACTTGGTCCCAAAGCTGACTGCTCCTCCTGTGAACACCCGTGTGCTGGCCTTCCTGTCTGCTGTGGCTGGAGACGCTCTCACACGCCACCTAGGGGTCATCCTGCCCGCCCTCCTCTCATCCCTCAAAGGAAAGCTGGGAACAGAAGATGAAGCCCAGGAGTTGTGTAGCTGCCAAACAGTGATCCTCTCAGTGGAGGATGAAGTGGGCCAGCGGATCATCATCGATGACCTGCTGGAGGCCACGCGAGGCGCTGACGCTGGCGTCAGACAGGCTGCTGTCACCATCCTCAATGCCTACTTCGCCCGTACCCGCCTGGACTACAGCGCCCATACTCGCAACCTGCTGTCAGGCCTCATCCGCCTTCTCAATGACTCCAACCCAGAGGTCCTGTCTCAGAGCTGGGACACCATCAACTCCATTACAAAGAAACTGGATGCGAGCAGCCAGCTGGCTATGATTGATGACCTGCACCGAGACATTAGATCAGCAGCTGCAGACGTTAAGGGTCAGCACCTGCCTGGTTTCTGTCTGCCCAAGAAGGGTGTGACCTGTATCCTGCCTGTCCTGAGAGAAGGTGTCCTCACCGGAAGCCCCGAGCAGAAAGAAGAGGCAGCCAAAGCATTAGGAGGGGTCATCAAACTGACCTCCCCTGAGGCACTGCGGCCCTCTGTCGTCAACATCACTGGACCGCTCATTCGTATCTTGGGAGACCGCTTTGCCTGGACCGTGAAGACCGCTCTGCTGGAGACTCTCACCCTGCTGTTGGCAAAGGTGGGCATTGCCCTGAAGCCCTTCCTGCCCCAGCTGCAGACCACCTTCCTGAAGGCCCTGCAGGACTCGAGCCGTGGGGTGAGGCTGAAGGCTGCTGAGGCTCTGGGCCAACTGGTTTCCATCCACACTAAGGTGGACCCCCTCTTCACCGAGCAGCTCTCTGCCATCCGCAATGCTGAGGACTCAGGAGTCAGGGAGACTATGCTCCAAGCCTTAAGGTTTGTCATCCAGGGGGCCGGTTCCAAAGTGGACCCAACCATCCGCAAGAACATCACCACCACATTACTAGGCATGCTGGGACACGATGAGgATGCAACCCGCATGGCGTCGGCCGGCTGTGTTGGTGAGCTGTGTGCCTTCTtgtcagaggaggagctgaagagTGTGTTACTTCAGCACATCTTGGCGGACGTGTCTGGTGTTGACTGGATGGTGCGTCATGGCCGTAGCTTGGCCATGGCCATAGCCGTTAAGTCTGCTCCCGAGAAGCTGTGTGGGAAGGAATACTGTGATACTGTGACAGAGACCATTTTGGCCAACGCCACTGCTGACAGGATTCCCATTGCCACCAGTGGGATCAGAGCATTGGGATACCTGATGAGGCATCACCTTAGAACAGAGGGAGGCGGTAGTGTTTCCCAGCGCATCATAACACAGTTTGTCAAGTGTCTTCAGAATCAGTCCAGTGACATCAGACTGGTGTCAGAGCGGGTGCTGTGGTGGGTGTTTAAAGAACCGGCAACACCCTCCTTGGAGGCCAATCTCATCAAGCCCCTCCTGAAGAGTCTGCTAGACAACACCAAGGACAAGAACACCAGCGTGAGAGCTCAGAGCGAACACACCATCATCAACCTGCTACGACTCCGACAGGGAGAGGAAACCATGCAgAGTATTACTGTCATTCTGGACTCTGCGAGTAACGACCTGCTGTCAGAGTGTCACCGTCGGTCCTTGAAAAAAATTGCCTGCCTGCCAGACTCCAATGAAGAGATAGACGACACCATCCTAACGTGATAGAGTAGGACCGAGCTATGAAATGATCCCCACTGTACAACCCCAGACACACTCACCACACATGCCCATGTTGCCTTTCATGGACCAATACTGAGATGGGTAGTGTTTTCCCACCTATTCCCCAAGAAATtcctcctttattttttttttttcttctcttttctctcattGTTTTAGTATCCTTTAAGCCcaatttataatttttattttattttattttatctcacAATGTGCAGGTTATTCACCTGTACTAAACTACATTAAGAAGACACAATGCCaattttgttttgatgtttCAGTGTTTTGCTACTTATTTTACCAAAATGATTTCAAGCATTTAAGACGCTACTGTAATGAAACACCCCCTGTCTTTAACTTTTATTTGGactttgtgtgtgagagttgtTTGGGGGGGAAAGCAACCTcttataagaaaaaaaaaataaattcttatgTCAGTGATACGGTTGTAAAAaggcaatacaaaataaaaaagatctTGATTTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU80652 lncRNA downstream 33816 8201493 ~ 8201743 (-) True G60073
TU80651 lncRNA downstream 34184 8201036 ~ 8201375 (-) True G60072
TU80643 lncRNA downstream 64953 8170385 ~ 8170606 (-) True G60064
TU80536 lncRNA downstream 331647 7903693 ~ 7903912 (-) True G59972
TU80534 lncRNA downstream 333020 7902231 ~ 7902539 (-) True G59970
TU80730 lncRNA upstream 26874 8299177 ~ 8301619 (-) True G60133
XR_005639527.1 lncRNA upstream 90457 8362760 ~ 8369854 (-) True LOC120560869
TU80738 lncRNA upstream 99963 8372266 ~ 8386564 (-) True G60140
TU80746 lncRNA upstream 138600 8410903 ~ 8411138 (-) True G60146
TU80763 lncRNA upstream 164072 8436375 ~ 8436659 (-) True G60161
XM_039803060.1 mRNA downstream 550 8216297 ~ 8235009 (-) False rab35b
XM_039803059.1 mRNA downstream 563 8213946 ~ 8234996 (-) True rab35b
XM_039803958.1 mRNA downstream 74302 8089036 ~ 8161257 (-) False LOC120561008
XM_039802743.1 mRNA upstream 2618 8274921 ~ 8281269 (-) True vamp5
XM_039802742.1 mRNA upstream 2618 8274921 ~ 8281262 (-) False vamp5
XM_039804128.1 mRNA upstream 32119 8304422 ~ 8321883 (-) True vamp8
XM_039803744.1 mRNA upstream 52761 8325064 ~ 8346266 (-) True ncaph
XM_039804237.1 mRNA upstream 371100 8643403 ~ 8727443 (-) True tacr1a
TU80531 other downstream 348156 7879424 ~ 7887403 (-) False anapc7
TU80421 other downstream 651040 7584086 ~ 7584519 (-) True G59881
unassigned_transcript_243 other downstream 724268 7511221 ~ 7511291 (-) True trnag-ccc
TU80230 other downstream 1238703 6991203 ~ 6996856 (-) True G59739
TU80011 other downstream 1711885 6522759 ~ 6523674 (-) True G59563
TU80745 other upstream 128719 8401022 ~ 8402566 (-) True G60145
TU81433 other upstream 2916839 11189142 ~ 11189741 (-) True G60715
TU82089 other upstream 5316736 13589039 ~ 13589332 (-) True G61264
unassigned_transcript_252 other upstream 6666672 14938975 ~ 14939047 (-) True trnaa-agc_14
unassigned_transcript_253 other upstream 6672193 14944496 ~ 14944568 (-) True trnaa-agc_15

Expression Profile