RNA id: XM_039802761.1


Basic Information

Item Value
RNA id XM_039802761.1
length 5544
RNA type mRNA
GC content 0.44
exon number 2
gene id adra2b
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 25958799 ~ 25964487 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ACCTCACTCATTAGATTTCCTTCGTAACGTCCCGTTCACAAGTGAAGATGCTGCTGCGCCTCTGTGTGGAAGCCTGTGATGTGCGCCAGCGGAACAGCTGTATCTTCGTATCCCGGTGAACTTCTGACGAGACAGAAGCACCAAGGACCGAGAAACAGCTCCTGAGACTCACAGACTGAAGCTGCTGTCCAGGGATCACTTCACTACTGAAGGAACAACGCGTTTTGACTTCATATGTTTCTTCATGCGTAAAGCTGGAGAGCTTGAGGTTAACTTTGAGCTTTCTGTTGTTCGATTTGAAACGCTGCCATCAGGCATTTACTAGTAAATCACTGTAAATATTGCATAGTAACTTTATTTCACTTTATTGAAACCATTCAGTGTTCGCTGTTCAGATGAGACTGTCAGTTATACGCGCGTCTCCAAACGAGGACGCACGGAGATCTCAGAGGGGTCGAGATTATTTACTCTCATTCGATTTTGTACATTCAATGTCGCTTCGCTGTAAATGAccctaaattacattattataaatGTAATCTTGTCATCGTTAAGGCAGTAATAAACCcgctaagaaaaaaaaaaaaatcaaacttcGTGCGCTAAAGAAGTTTTAGTTTTTCGGGCAGAGCAATCAGCgtcacaattattattttttttggggtgggaGGAAATCTGTTTTACAAAGTGgaatatcttttaaattgaaaaaccGTGATCTGTGTCTTGCCGCATTGCCCAGGACTGTTTTGTATGCTTAAAATGGACTTGGAAGAGATCCCGTGGAGGATGCAAGGGAGCACTCGTTTGGAAACAACACAGGGACACAACGAGAGCAACTGAGTgaccaaacaaaaaaagactcCTGGAAAGCTTATCCCAGCATGGCCTCGGTTATGGAGAACGGCTGCTCCATGGAGCTGAGCGCCTGGAACAGCAGTGTGAGCAGCGCCGGAGCCTCCTTGCCCTGCAACCAGAGCATCCTGAAGCTCGCCCCTTACTCCCCTGAAGCCACGGCGGCCTTCGCCACCGCAATAACCCTGATGGTCCTCTTTACCATCGTGGGGAACATCATGGTCATCATCGCTGTCCTGACCAGCCGGTCTCTCCGAGGACCGCAGAATCTGTTTTTAGTGTCACTGGCTGCTGCAGACATTTTAGTGGCCACACTCATCATCCCCTTTTCTCTGGCCAATGAACTGCTTGGCTACTGGTACTTCAAATCTCTATGGTGTGAGATCTACCTGGCGCTGGATGTGCTGTTTTGCACCTCCTCCATTGTGCACCTTTGCGCCATCTCACTGGACCGCTTCCTGTCCATTTCCAGGGTTACTTACGGGCGTCAGCGGACTCCCAAACGCATCAAAGCCGCTATTGTGGTGGTGTGGCTCATCTCTGCCGTCATCTCTTTCCCTCCCCTGCTCTCACTGAACAAAAGCGAAGGAGGGGATGAGGGGAGTGAGGGGGGACCTCAATGCAGGCTTAATGATGAACGCTGGTACATCCTTTACTCCACCATCGGCTCCTTCTTTGCTCCATGCCTCATCATGATTCTGGTCAACATAAGAATCTACCAAATTGCCAAGCAGAGAACACGTTGTCCACCAGGAGAGCCCAGGAAGGATGGGGTCGGCTCTGCTACACCAAGTCAGCCTCCACGACATGTACAAGCCAACGGTAAGGATGATGAAGAAAGCACACCCCCGTCATCGAACAAAACATCCAATGTCAGACCCCCAACCCTCGCCATCACCCCTTCTCCTTCCCCAGGAGAGACTCAAACCTCCCAAAATCCCACCTCCAATAATCTTCTGCAACCTCCATCCCCTTCTCTAGCCATGACCCCTGTTACAACCTCCCTTGATACTTCTCCTCATGACCCCTCAACTCCCTCCTCTGTGCCTCAGTCTGCCCCTGCCAAGACTAAAGAGAAGGGGAAGAAGGGCAAGCGGCAGAGAGGGAAAAAAGCTGACAATAACAATGGTGACAGCTCAAGCACAGACAGCGATATGGAGCACAGCCATGGAGGAGGCCGAGGCAGCACCAGCATGCCAGGATCACCTGCGGGAGGGGGGGTCCACTCCCCAGCCTCAGTCAAGCGTTACCGGGACATGATCGCCACTTCGAAGGGGGCTCGGCTGGTGCCAGGGAGGAGGTCAAAAACAGAGAACAACCCTGGAGCAGCGAGGCGCAAAGCGATGGCTAACAGAGAGAAGCGTTTCACATTTGTTCTGGCGGTGGTAATCGGTGTCTTTGTGGTGTGCTGGTtcccgttcttcttctcctACTCTCTGCAGGCAGTGTGTCCGGAGACATGTGCCATCCCTGGTCCACTCTTTACGTTTTTCTTTTGGATCGGttactgcaactcctcactcaaCCCAGTCATCTACACCATTTTCAACAAAGACTTCAGAAATGCCTTCAAAAAGATACTGTGTAGTAGCACCAAGGGTACTTTCTTTTAGCATACATATCCCCTGTATAGGACATGGACTAAAAAAGCATATAAAAATCAATAATTTCCATTTCCGAACACTCAAAGGGCtgtcttaaaaaaatgttgaactgtgGAAATTCCAGCATGAAGTTCAGAACTGAGAGACACTCTTTTACAGCCACAGTGTGCCAAACAGGCAACTTGGACTGTGAAATCGCAGCGTTCATCAGATACACGCATACATTTTTACATAGTGTGGGATGAAAACAGGACATGGAATATAGGCAGCAGTCAAGTATTTAGTGCTGCCTCTATTCCATGAAAAAAAGGATTTACACTTCAGTATTGCTGATACGATTTCAATTACAACGTTTTATCTCCAGATCACTTTGAATTATGGATAATGCTGAGGTACAGGGGGTGCAGAATCATTGAAGAAATGTAGGCTATACACTCTTACAAGTGATAAGTCGTAAAACTGACAGAGGGAAGCAGGAGAACAGTTGAGAATGAACTCCTAAATAAGAATACAGACAgtttaatgtaaaatatataatattttgtaATTATTAAATTCTACAGGACTAATGGGAAAAGAAAACAAGTATAAATAAGAAAAGTGACCTTAGGTTTCTGTGAGCCTATGGCCATTTATTTATCAATACAGAGCACAAGGAGCACGCAAGCTTAGTGGTGATTTCTTACATCTGCAGTCCTAATTTGCCCAGCTGCAGGGCAAACATGTGTTCCCCGATTTTTATCTAAAAcgcgcagcagcagcaacaacaacaacaacaagagaaGGTTTCTGACGATTTCAAACGGGATGGCACAGACAAGGGCACCCTTTCAAATTGAACTTGAGGGCTTTCATAAGGAAAGTCTGCACATCAGACACCTTGCTTGTGGCTTGGTGTGGGTCATAATGGACAATCAGGTTGTTTGTAATGAAACTCGTGGCTTTCAACTTTTATGAAATACAGAATAAGCTTAAGTGTGGGGTAATTTGGacttaaaagaaaacaacaaaatgttattGAGATGTGAAAATAAGACAATGTGATAATCCTCATCCTCTTAGCTTTGCTTTTTCATGCTATTTAACTTAACCTGGACATTCACACCAATGGACTGGATTGAGCAATCCTTTTTAATGAACATGTGACAATGACATTTGAGGAACAATCAAAACTGTTTTTAGCCTCTTGAAAGTGTTTCAAATGTTATTCACAGTATCTAATGGGAGGTACATCCGctgaagactgaaaaaaaactaaaataattcaacgTTATTTTCCAGAACCCTGTTTAAGTGGGCAGACATTTACATTGACTGTAAAGGACACATAAACAATGTAATTATGGATGTGTAATGTTATCCCTAATTACGCCTACATGGGTTATTCTGAGAACCATTTGGTTGAGTCACTCTTTACCAACGCCTCTGGTACATCGTCACCTGCAGTGGACCTCAACATGGCACATTTGGTTTATAGCTGAGAGGCAAGAGCATGAATggtacatttatttttctcaccATGAGACTGAGGCTCTGTCAGCTTCCtcgataaaaaagaaaagaaaatgtgtctgTAAATGTGAACAGCACACAGGCTTATTGACTCAATGGGACAAGGGCTGTCAGCAGCAACACTTCAATTTACTAATTGTCTAATACtgctgacctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgcgcgtgcgtgcgtgagtgtTGAATTTAATGCTTTTCTGTAAAGAGTGTCAGTGCCTCTTCTGGCTGCTATGTACTGCAGATCTATTGTAATATTGATAAGAATAGAGACCAGAATACCTGGTGCAGGCATCACTTTGTGAATGTTTCTACTTGATGGACAGATCAGTAGTATATCGCTACATTGAGTTAAGTCTTATTGAACTGAAAGTCAGTTTATCAGTACATGGCTATTTAGTGAACACCCTCTAGGGACCAAAGAGCCTTATAGGACACCAGCCTGACTCAGTGATATCTGGCTCTGTGTTGCTTTAATGAAGTATTACTTTATATTTGGTGTATGTGATGGGAGGAAATGATTgaaaacactgtattatttatttcaaactatttgtgttttctgtctatTACCTATTTATTGTTCAGTTAGGCTTCtgtgcttttattctgaaagacAAGCAAAGTGGAACTGATATCAAAGCGCGAGATCACTGTACAGATTTTTAATATCTTTAATAAGAGCTGAATTGATTTGTGCCGTCGAGCTCTTGCTTTGTGGAGATCGAGCTATATTTGAGTTTGGGATGTATTTGTGTTGAATTGAAGGAACACAAACTTTGAGTTATGTGCATAATGCAGAATCTACAAATGTAACATATGTCATTGTTTCATCAAGTTATAGTGCAGCAAAATGTTCAATCAGAAATACAAGCACAGTCATGGatgtacatttttttaagcATACTGCAGCAGGAAAATCTCTCTTCAGCACTGTTTTCCTGAAAAAGTAATCGAACATGAAAATGTCATTAGCACCCGTAGCCTGTTTCAGTTGGATGATTTGCAGGCTTTTTGCAGATTACAATCCATATCACACAGAGATGTTTGGAGATTCAAATAACTGATAAAACAAAATGGTTGAGAGTAAGAGCTCTGTGCACTTAAACATCTGTTCCCTTCACTCATCTGAAAGGGTAATTTTCTCTCCAGAAATACAAACAGCTACAGCAACGCAATTACAACAAACATAGCCACAGAGGCCATGAATCCATGGCCGTTTCTAATAAATATGAGTTGCAATGCTGCTCAAATCCCCCAACCATGGGTTTATGTGGTGAGACTGCTGCTTTGTTTACTTAAAAAAGTATGATTTATGGCTAAAAGGTGATGCAGTAATCAGTCTCTTGATCACCATCCTCTCCCCTGAAACTCTTCTCCTACTGTGTTTGGACCAAACTGCATGGTCTGAGCTTTACAATCTTCTATCCCCCCATCTGTCATCTTCCCTCTCCAGTTTGGAAATAAAGCTACTTGAAAAATCACGA

Function

GO:

id name namespace
GO:0019229 regulation of vasoconstriction biological_process
GO:0007194 negative regulation of adenylate cyclase activity biological_process
GO:0006940 regulation of smooth muscle contraction biological_process
GO:0030168 platelet activation biological_process
GO:0071875 adrenergic receptor signaling pathway biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004938 alpha2-adrenergic receptor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU86587 lncRNA upstream 29641 25928924 ~ 25929158 (+) True G64677
TU86549 lncRNA upstream 30207 25926087 ~ 25928592 (+) False LOC120560359
TU86572 lncRNA upstream 36411 25922163 ~ 25922388 (+) True G64663
TU86567 lncRNA upstream 40706 25917765 ~ 25918093 (+) True G64658
TU86566 lncRNA upstream 41323 25917187 ~ 25917476 (+) True G64657
TU86705 lncRNA downstream 339363 26303850 ~ 26321956 (+) True G64764
TU86725 lncRNA downstream 407147 26371634 ~ 26383843 (+) False nsd3
TU86797 lncRNA downstream 529848 26494335 ~ 26496987 (+) True c6h22orf39
TU86807 lncRNA downstream 547978 26512465 ~ 26514759 (+) True G64834
TU86810 lncRNA downstream 567265 26531752 ~ 26533420 (+) True G64836
XM_039802774.1 mRNA upstream 6220 25949454 ~ 25952579 (+) True dusp2
XM_039802765.1 mRNA upstream 9462 25939873 ~ 25949337 (+) True LOC120560362
XM_039802764.1 mRNA upstream 9462 25939873 ~ 25949337 (+) False LOC120560362
XM_039802767.1 mRNA upstream 9462 25940120 ~ 25949337 (+) False LOC120560362
XM_039802768.1 mRNA upstream 9462 25940120 ~ 25949337 (+) False LOC120560362
XM_039802632.1 mRNA downstream 16421 25980908 ~ 26161608 (+) False gpat2
XM_039802631.1 mRNA downstream 16422 25980909 ~ 26161608 (+) True gpat2
XM_039802633.1 mRNA downstream 209737 26174224 ~ 26180116 (+) True zgc:152830
XM_039802637.1 mRNA downstream 216524 26181011 ~ 26184360 (+) True pcna
XM_039802416.1 mRNA downstream 232753 26197240 ~ 26245476 (+) False kcnip3b
TU86550 other upstream 43270 25914382 ~ 25915529 (+) False LOC120560031
TU86491 other upstream 262229 25684972 ~ 25696570 (+) False LOC120561182
XR_005639471.1 other upstream 1124168 24823718 ~ 24834631 (+) False cdc14b
XR_005639472.1 other upstream 1124179 24823719 ~ 24834620 (+) False cdc14b
TU85875 other upstream 2265508 23692662 ~ 23693291 (+) True G64108
TU86770 other downstream 448382 26412869 ~ 26414597 (+) True G64814
TU86790 other downstream 529848 26494335 ~ 26496386 (+) False c6h22orf39
TU86791 other downstream 529848 26494335 ~ 26496328 (+) False c6h22orf39
TU86793 other downstream 529848 26494335 ~ 26496261 (+) False c6h22orf39
XR_005639500.1 other downstream 649750 26614237 ~ 26642481 (+) False cltcl1

Expression Profile