RNA id: XM_039802768.1


Basic Information

Item Value
RNA id XM_039802768.1
length 4082
RNA type mRNA
GC content 0.43
exon number 10
gene id LOC120560362
representative False

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 25939776 ~ 25949337 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGAACCTAGCTGCATTTTTTATTGTCTTTGACTACTTTGGAGGGTGAACAGACCATTCTATTTCGGTTGTAGGCCTAGGGACTAACGCTaggttagttagctagctagctagctaacagcggAATCTGACTAGCTAATGTGTGGTGCCAACCTTATTTTGACTAATGTGTGGTGCCAACCTTATTTTTACAGTCAGGCAGTATTTCTCAAATGGATACGTGTAGAAACTGCACTAAGTGAAAAATCACAGGAGCCGAAGTGACTCATCCTGATGTGCAGGAAGCTCAGGATACATAGGGCAAATGCTGCTGGTGCTGGTGTCCCTGCTCTGCTGTGTCCCTGCAGCCAAGGCCTGTCTGCAGTGTGACCGCAGGATCAGGCTCCTACTCGAGGACTTTGTGCTGTCTGCTCCCACTGTGAACAACCAGATTGAAATGAAAAAGATTTGTGATCATGCATACGTGACCTACAGAGAGACCAGCTGGGAGCGAAAGGGAGTCATTGATCCCACCACTCTGTACAGAGCCAGAACTGAGTACCAGAGTGAATTTGACCGCTTCTTGAAAACCAAGCACACTGgatcTGTAACATTTGAAGCCATTCAGATCCTGGAGAAGGGCAGGAAAATCCTAGAAAAACACTTGGACACATTTATTCGTGATGGATTGTGCCCCAACAAGTGTGGTCTTTTGAAACAAAGAGTAATAGATTGCATCTCTTGTCGCTACAAGATATACATCTGTCGCTCTCCCTCTGGCCAGCTGGACTGCGGTGAGTACCCAGTGCTGGCTGAGGAGGGAGGCCAGGCAGTGTTGAACTGTTTCCTTCCATGGCATCGTCTTCTGTTGGGAAGACCAGAGTACCACTACTCCTGGGTCCCCGGCGTGCCAGCAACTGAAAAGctgatCGAGCGTGACTTCAAAGCCTTGGTAGTGACAGATGACTCATCTGTTGTCTTAAATCAGCTGCATGTGGATGAACAAGGAACATATCGCTGCTCTCTGCAAGATCAAAGTGGAACCGTCTTCTACCAAGTCACTTTCCTACTCGCTGtctGCCATTTACCTGACCAAACACACCGACCCATGATCACTCTGCCCTCACTCCCCCACGGAGACAACTACTCACCTTTTCAACCTACTGCAGGCCTGCTGGTGCCAGCCATCGTCATGGTTACTGTTTTGAGTCTGGCAGCGAGCGTAGGCCTCCTAGTTGTCCTGGGAATGATGATGAGTCAGAGGAGAGCCGCTGAGGAGCCGAgcagaaggaggaaggagggaaaaaacacacataacacagtgtgatgcaaatactgtatacagtacatacacacatacagtaaatgctAGGGAGGTTTTACTCGCTTCATGTTGGATATTTCTCTCAGTGGCTGAATAAATTCCCCAACACAAAGTGCTAAGTCATGTCTAGAAATAACACAGAAGTGAGAAAAGCTGTTAGCTACATGATGAGGCACAAAGGGTGTCTAAATGTTTTTGATAAATATATTGTTTGTCCTAAATGATGAACTAGGATTGTCAATGTGAATCATGGTGAATTTAAACACTACGATCTCACTCAGAAAAAAGAATGTTTGTGGTGTAAGAAAACTAGAGCGTGCAACACCCAcacttatatacacacacatacacacacacacacacactaaaaatcCCCCAGAAACCGTCAACTTTCCATAACATTAAGCACCAGCTTGTCAGAACACATGAATGATCTCACCCCAGCAGGGTCACGTTCCCCCTGAATGGAGTGATGGTGGGAGTTTTTGAGAGGAATAAGGGATGAGGTAAATCTCCCggattaaagtgttttttttttcagagattaAAAGCCCCAGTCATCCAATTAATCCTGGATAATCCCCCtgtgggaggaggggggagacgTGACAGGGTAAAAGATAGCAGCAGATGTTTTCATCAGGGTTTCAttaaatgtttatgtatgtatctatatatTCATTCAGAGACTGAATAATAATTTTTTGCATTATTTATAATGTCACCGTTTTCTTGCAACACGATCACCAGACTTTAATTCTGTTTCCCGTCTGCCTACAGTATGCTCTCTGTAGATTTTGATGCCACAAGTTGATTCAAAAGATAGTCACCTCTTTCTGTCACATGTCATATTCCTGCTCACGCTTGCCTTTTTTCGTCTTTCATAAATTGTGCTATTGTCAGCACCTAGCTTGCTTTCAATGTAAAAGTCAAACTTCCTGTGATAGGATAGCAGAAAGTCGTCATCATCAACAACAACTAATTCACACCAATTGCGTCAGGCCAGATGTATTATTGGCTGATTCCCTCCAACCATGACGCTCTGATGTGTTAACATAGGAAAGATGATGAAACCACTGAACCAAATGAAAGTAAAAGCGAGTGATCGATTCATGTATGAGTCTTCACATCCAGGAACAGTAAATAAATCACCTCTGAAATCAATCAGCGCTCAGGTTTTTTAGGGAAATTTCTGATAAACATCAGGTTTAGTCAGTTTGGGTTATGAGCTATGACGAATGTAGCTTGGGTTGTGATGATACagtatgagggtgtgtgtgtgtgtgtgtgtgtggatgttgaGGCCTGCATGGATGGTGACAGGATGTATGTACAGTGCTTTTTCCTGTCGGGCTGCTGAGATGGGGgcgaatgttaaaaaaagaaaccattCTTTAAGACTccctcacacagagacacgtcACACTCGTCCAACTCAACAGACCTCATCACTTCACTGTgggtttatatgtgtgtgttcaagCCCAAAGTGCAGATTGAGGCTACAGTAAATGCATGCTCAGCGGCTCTGCTGACAGCCATGATGTACTGTGCAccaaagtgtgtgtctgtgcatatgtgtgtgtgtggagtgaatTTGCAGCCTCAGCAGGGAGAGAGCATGACAAAGTGGGAGTGCTGCTGAGGGGCCTGCAGGCAGCGGTGAGGGAAAGAAGGGAAGTGGGAACATGAAGAAAGTGGTGTCAGAGGTTTGAGTGGGAGAAGTACGTGGGAAGGCAAAGTAATTTGAATGTGGGTTGTGAGGAAATTAGGACAAAGATATCAGATGATCAGAGATCAACTTTGATATACGGTCCCACACTACACATTGTACataaatgacatttttctgTAGATTACAGGACAATGTTATCCAGTGGTGGAAAGAAATCTACAATATCCTACTCATTTAGAATTACTGGACTTAAATATTACTCATTTAGAATTGAGACAACTTGTATTGaaaactactcaagtaaaagcaCAAAAAGACCGCTCTTGATGTGTACTTTAAGCCTTTAAAACTTCAACTCTAAGGTGTTTCACTAAATATTCACAACTAAATAAGCAACAATCAAAGTTTCAAAGCAAGTTTAACACTCAAAACACAAATCAGTTTCATCAGGAAACAGACTTAAAACCGGAAGATTAAACTACAAAAAAGAGAAGTCACTCATGTTAAATAACAGTTCTAACTTTAAAGAAACTTTAAGGTCACCAAGAAAAAGCCAACGTGGCTTCCTGAGTCTAACCTTTTTAACAGGAATACACCCTACCAAGTGTCTCCGATTCATCGTTTTCTTACAAAGAACCTTGTAATGTGTCATCTTTACTATTTAACATTATTAATGAAAAAATGATATCCAGTGCACCGTGCAGCTGTTTTATTGTGAGGCAGGGATTTTATTTGTTGTGCTGTGTAATAGACTATACTGTCATAGAGAAGAAAGATACATGTGCTGTAGATTTCCGAGCAGAGCAGCAACAAAGCAATTCAAACTTGTTCTGGTATTTTATCAGTGCAACATTTCACTTTTCCTCAAGGTAAAAAGCAATAACCAAAGGGAAGTCATTGAGAGGAAGAATGTGTTACTTTAGTGTGTGTTCTACATGAAAGCAGAAGGGGCATAGAGAAGCTCAGGTTTAATCTAGGTTGGGTTTTAACGTCCTCattcaacacaaaaacaacgGGATAACCCCAGAAGACCAAGTGCGCGGTAGGAAAATCAGACTTGACGTCAGTGTCCATATGAGGAGTGACGGTCAGGCCATATATGGTCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU86587 lncRNA upstream 10962 25928924 ~ 25929158 (+) True G64677
TU86549 lncRNA upstream 11528 25926087 ~ 25928592 (+) False LOC120560359
TU86572 lncRNA upstream 17732 25922163 ~ 25922388 (+) True G64663
TU86567 lncRNA upstream 22027 25917765 ~ 25918093 (+) True G64658
TU86566 lncRNA upstream 22644 25917187 ~ 25917476 (+) True G64657
TU86705 lncRNA downstream 354513 26303850 ~ 26321956 (+) True G64764
TU86725 lncRNA downstream 422297 26371634 ~ 26383843 (+) False nsd3
TU86797 lncRNA downstream 544998 26494335 ~ 26496987 (+) True c6h22orf39
TU86807 lncRNA downstream 563128 26512465 ~ 26514759 (+) True G64834
TU86810 lncRNA downstream 582415 26531752 ~ 26533420 (+) True G64836
XM_039802758.1 mRNA upstream 11524 25926100 ~ 25928596 (+) True LOC120560359
XM_039802136.1 mRNA upstream 24543 25914279 ~ 25915577 (+) True LOC120560031
XM_039802030.1 mRNA upstream 156083 25774378 ~ 25784037 (+) True LOC120559963
XM_039802203.1 mRNA upstream 177214 25757088 ~ 25762906 (+) True LOC120560092
XM_039802774.1 mRNA downstream 117 25949454 ~ 25952579 (+) True dusp2
XM_039802761.1 mRNA downstream 9462 25958799 ~ 25964487 (+) True adra2b
XM_039802762.1 mRNA downstream 9462 25958799 ~ 25964487 (+) False adra2b
XM_039802632.1 mRNA downstream 31571 25980908 ~ 26161608 (+) False gpat2
XM_039802631.1 mRNA downstream 31572 25980909 ~ 26161608 (+) True gpat2
TU86550 other upstream 24591 25914382 ~ 25915529 (+) False LOC120560031
TU86491 other upstream 243550 25684972 ~ 25696570 (+) False LOC120561182
XR_005639471.1 other upstream 1105489 24823718 ~ 24834631 (+) False cdc14b
XR_005639472.1 other upstream 1105500 24823719 ~ 24834620 (+) False cdc14b
TU85875 other upstream 2246829 23692662 ~ 23693291 (+) True G64108
TU86770 other downstream 463532 26412869 ~ 26414597 (+) True G64814
TU86790 other downstream 544998 26494335 ~ 26496386 (+) False c6h22orf39
TU86791 other downstream 544998 26494335 ~ 26496328 (+) False c6h22orf39
TU86793 other downstream 544998 26494335 ~ 26496261 (+) False c6h22orf39
XR_005639500.1 other downstream 664900 26614237 ~ 26642481 (+) False cltcl1

Expression Profile