RNA id: XM_039802790.1


Basic Information

Item Value
RNA id XM_039802790.1
length 3342
RNA type mRNA
GC content 0.46
exon number 14
gene id rasgef1ba
representative False

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 33156914 ~ 33294101 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CGCGGCTTCGGAGCTCACAGACACAAGAGAAGGCGGcgcagcaacagcaacacagCCGGAGCTGTCAATTCATTCATACGGATTCTGCTTCTCGGAACAAACCCGCTGCTCTGAAACCGACAATACCCGTTTTGCTTTCCTGCATTTATACCTGAATAATGCTGCAGTGAGTGACTGGAGTCGGGAGGGTCTGCTGGGTTTCACCGCCTCGGCTTATTCACACGTAAAAGGAGAAAGTCTAGGCTGTTGAAAGACGGTTTCGCACATTTTTGGAAAGGATACGAGGGGGATTCGCACCTGGATTGCTTGTTGAGGACAACATGCCTCAGACACCACCGTTCACGGGGCAGCTGAAAACCGGCAGCTACAACAAGAACCTGTACCAGACCAAGGAGGAAAGCTACCCCGGCCTCTATTATCATGACAACAACCTGGCGTCTGGGTCACTGGAGGCCCTCATTCACCACTTGGTCCCAACTGCAGACTATTATCCCGATaGGACGTACATCTTCACCTTCCTGCTCAGCTCTCGTCTTTTTATCCGCCCACACGAACTCATGTCGAAGGTGTGTCACCTGTGCGTGGAGCAACAGCGACTCAGCGACCCCCAAGCTGACAAGATGAGAGTCAGGAAGATCGCTCCCAAGATCCTCCAGCTGCTGACCGAGTGGACGGAAACCTTCCCATACGACTTCAGGGACGAGAGGATGATGCGGAGCCTGAAGGAGCTGACCCACCGGCTGGCCATTGGAGACGAGGTTTACAGGAAGGCAGTCGGCCAGATGAGCCAGGGTCTGATCAGGAGGTTGACGGTGCTCAGCCAGTACGAGGAGGCGCTGGTCAAGATCAACGCCACAGCGGCCGAACGACTGACGGCTGTTAAGGCAAAGCCTCAGGCAGCCATCCAGAGAGACATGCTGTCCATCTGCAACGACCCATTCACTGTCGCCCAACAGCTCACGCACATAGAACTGGAGAGACTGAGTTACATCGGACCTGAGGAATTCGTCCAGGCCTTCGTCCAGAAAGACCCTCTGGACAACGATAAGAGCTGCTTCAGTGATCACAAGAAGGCCAGCAACCTGGAAGCTTATGTCGAATGGTTCAACAGACTCAGTTATCTGGTGGCTACAGAAATCTGCTTGCCTGTGAAGAAGAAGCATCGAGCTCGAGTCGTCGAGTTCTTCATCGACGTGGCGCGCGAGTGCTTCAACATCGGCAACTTTAACTCCCTCATGGCCATCATATCTGGGATGAACATGAGTCCTGTGTCTCGACTCAAGAAGACCTGGAGTAAAGTGAAAACGGCCAAGTTTGACATCTTAGAACACCAGATGGATCCGTCCAGCAATTTCTACAACTACAGAACAGCGCTGAGAGGAGCCACACAGCGGTCGATCACcgccaacagcagcagagagaagattgtcatcCCTTTCTTCAGCCTGCTCATAAAAGACCTCTACTTCCTCAACGAGGGATGTTCCAACAGGCTGCAGAGCGGACACATCAACTTTGAGAAATTCTGGGAACTGGCCAAACAAGTGAGCGAGTTCATGGCCTGGAAGAAAGTGGAGTGTCCGTTTGAGAAGGATCGTAAGATCCTGCAGTACCTGCTGACTGCTCCAGTATTCACTGAAGATGCGTTGTATCTGGCATCGTACGAGAGCGAAGGTCCTGAGAACAACATGGAGAAGGACAGATGGAAGTCTCTGAGATCCACTCTGCTAAGCAGGGTCTGAACTTCTAATCTGAAGAAATCAGAATGAAGACAAACCCCTGACAAGCGAGCCGGGCCCTGTCAACGCCGCCGTTGTCTAAACGAAGTATCCCCGTGTTGGAAGGGAAACGACAATCTCTACTTTGGCTGCCCCAGCTTCAGATTTCTATCAAGCTCTGCTTTTCCTCACCTTCTCGCTTTTTGTGCTGTATATTTCAGGACAGCTATTTTTCCTCTTTGTATGACTTTGtagtctttttgtttttaaaaaagaaatgctacAAACCTTCACAGTAAAAGCCAAGGGGtgccaaggtttcttttctGAAGCATTTCACCCTGATAAACCTTCTGTGAGCGTAAATGGAGTTGTTGGGGTTGTTTGTCCACCCCGCTAGTTTTCAacaagttttttgttgttttttttccactgaagCTACAAAGTTAGCTGCTGGTTGGCTAACTCAAAAGAAACGCTTTACTCGCTGGTTTCATAAGCCAGCGTTCTTTGTACGGAGAACTCCAAACTTGCCTGGAACACTGTTGTTTATCATTAAGCTAGCCATCatttgtagttttattttgtctccTTCCTTTTGAGTATATGTCACTTCATGTTCCTGAAGGTTTTGTTAATCGCGATGTGTAAGAAAATGCACTGGCTGCATTTTAAAGAAGATGTAAATGAGCTTTTTTGTTCGTTTGTGTGGTATacatttttgtgattttcttgcCGTTTATATTTGACACACCCAAGGCCTCAGTAAACTTCAACCATAAGAGAAACACTTTTGGTTAAAACGGCATCTGAAACCCCCGTCCCCTGCGTCTTTCCAACATAGGAATTGGGGTTTGAGACACTGTTGGATGCTCTGCTGGATGAGCACTTCATTACTGAGGCCTTTAGCAGTGAGTTTAAATGGAAGGTGTGATGATAGTGTGTATCCTGTTGTTCCTGATAATTAGTGTTAAAATAGCCCCACTGCTGCTGAGAAGATAAGCTGGGCTGTAGGCTACCATTCATATTTTCCCCTTTTTGTTCCTGCTCTAATGTAGAAAATGAGTATGCTTGTGCTGCCCCCTGGTGGTTCAGTCTGAAAAGTGAATGGATTTTGTGCGGTCGAGTAATGTGCACTGAGGATTTCTGTTTAAACCCTAAACATGCTAAATAGtatcatttttatgtttttattttcatattataaaaaagtacagtttcttccatatttgttttatttataaatatatttgtgtagtCACATTATGTCCTCATGCcaatatttactattattttattgttatttaattttgtaCTAGGTACATAACATGCTTAAGTAGTCCTCAGGTATTGGCTTaactattatttttatatacaaGTTTGTATGATTATTTTTCAAGGTACTAGCTCAGAGTATGATGTTAAACGACTGATGTCTGCTTTGCCTTGACTGCTCCTCCCTCAACACAGAGTGCTGTTGTGATTTATTGTgtactgtgtttgttttttccccttccTGTGTTTGTTCATTTGTATTTGGACTGTTAAAAATGGAAAGAGGaaccatttgtaaatgagtTGGTAGTGTTTAAAAGAGaaagttaataaaaaatgtttaaaagta

Function

GO:

id name namespace
GO:0043087 regulation of GTPase activity biological_process
GO:0051056 regulation of small GTPase mediated signal transduction biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0005085 guanyl-nucleotide exchange factor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU88986 lncRNA upstream 119616 33139868 ~ 33140093 (+) True G66498
TU88985 lncRNA upstream 123692 33135790 ~ 33136017 (+) True G66497
TU88984 lncRNA upstream 131807 33127702 ~ 33127902 (+) True G66496
TU88897 lncRNA upstream 186987 33071537 ~ 33072722 (+) True G66439
TU89020 lncRNA downstream 55405 33349506 ~ 33350553 (+) True G66521
TU89021 lncRNA downstream 57598 33351699 ~ 33352950 (+) True G66522
TU89049 lncRNA downstream 307536 33601637 ~ 33603587 (+) False antxr2a
TU89069 lncRNA downstream 431419 33725520 ~ 33725782 (+) True G66568
TU89072 lncRNA downstream 461468 33755569 ~ 33755955 (+) True G66571
XM_039802791.1 mRNA upstream 7302 33248404 ~ 33252407 (+) True LOC120560373
XM_039802687.1 mRNA upstream 148876 33077246 ~ 33110833 (+) True cds1
XM_039804504.1 mRNA upstream 189199 32964199 ~ 33070510 (+) False wdfy3
XM_039803542.1 mRNA downstream 9238 33303339 ~ 33344015 (+) True prkg2
XM_039804106.1 mRNA downstream 223498 33517599 ~ 33573326 (+) False antxr2a
XM_039804107.1 mRNA downstream 223499 33517600 ~ 33603625 (+) True antxr2a
XM_039804184.1 mRNA downstream 484906 33779007 ~ 33790810 (+) False paqr3a
XM_039804183.1 mRNA downstream 484908 33779009 ~ 33790810 (+) False paqr3a
XR_005639474.1 other upstream 146893 33077246 ~ 33112816 (+) False cds1
unassigned_transcript_266 other upstream 687950 32571688 ~ 32571759 (+) True trnap-ugg
TU88651 other upstream 889725 32364860 ~ 32369984 (+) True G66263
TU88642 other upstream 929719 32322507 ~ 32329990 (+) True G66256
TU88617 other upstream 1122743 32126293 ~ 32136966 (+) True G66231
TU89079 other downstream 481824 33775925 ~ 33776398 (+) True G66578
XR_005639528.1 other downstream 1219909 34514010 ~ 34527405 (+) False cfap157
TU89395 other downstream 1471845 34765946 ~ 34773700 (+) False LOC120561070
TU89401 other downstream 1567398 34861499 ~ 34864266 (+) False G66832
TU89402 other downstream 1567398 34861499 ~ 34864266 (+) False G66832

Expression Profile