RNA id: XM_039802795.1


Basic Information

Item Value
RNA id XM_039802795.1
length 3593
RNA type mRNA
GC content 0.46
exon number 16
gene id araf
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 4437533 ~ 4456244 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TAATAGAATATTGCATCAGTAATTGCTGCTAGTTTTTAAGACAGAACAAACATGACAGTGAATCGGCGCCACCCACTGGGCATTACCGTGCTGTGGAGCCTATGTGTGGAGTTACTTTTCCTAACGCAGCAGACCAGAGAACCAACCAATGAACAAGGAGCATTTCGGAGGTTTTCCGCTTTCCCCGAAGTTCTTGACAGATCCGACTTCAGATTGAAAGAATTCAAGATGGCTGCTACAGGCTCCGAGTAAAGGGCTAACTCTTGTGGATCCCACTGTGCATGAAGCTCTCCTGAGGTTGTGGTGTCGAAGTGCTCTGTGCTCCAGCTCCTCTTGCCTCTCATCAtgtcctccacctcctcctactcctcctcAGGGGACACTAGTCCAGAGGATGTACCCCGAGGTGGGGGCACTATCCGAGTCTACCTCCCCAACAAACAGAGGACAGTGGTGAATGTTCGCCAAGGGCAGACTGTGTACGAGAGTCTGGATAAAGCGCTCAAAGTGAGAGGCCTGAGCCAAGATTGCTGTGCTGTATTTCGCCTTCTAGAAGGCCGTAAGAGACTGACGGATTGGGACACAGACATCACTCCGCTGGTTGGAGAGGAGCTTTTAGTCGAGGTCCTGGATGATATTCCCCTCACCATGCACAACTTTGTACGGAAAACCTTCTTCAAGCTGGCTTACTGTGATTTTTGCCACaagtttctttttaatggcttcaGATGTCAGACATGCGGCTACAAATTTCACCAGCACTGCAGTAGCAAAGTccctactgtgtgtgtggacatggATACAGTGAGCAAACGGTGTGATCCTAATCCCTGCACAGATGAGTACCCAAGGATACTTTTGCCAGAAAATTCCCCATCACAGAGCAACCTAGCCTTAACCCCAGAGCCTGCTGGGATGGACCTCCTGTCCCCGACCTCTGCCTTCCGTTTCCCCATGCCGGGTGGAGATGGCCAATCTCTACAGAGACATCGCTCCACCTCCACTCCCAATGTCCATATGGTCAGCACAGTGGGCCCTGCTGGCACCAGCATTATAGAGGAAGCACTAAAGTTCAGCAACGCAATGGGTCCTGAGCCCTCACCAAAGCCCTCCACCAGCCCGCCCACTACTCTGGGCTCTCCCGGGAGGAGACCACCCTCAGAGCACAAGGAGCGCAAGCCCTCCTCGTCTGACGACAAAAAGAAAGTGCACCGAGGGGGCTACAGAGACTCAAGTTACTACTGGGAGGTCCACTCTCGAGAAGTCACCATTCAGAAGAGAATAGGTGCTGGCTCCTTTGGAACAGTCTTCAAGGGCAAATGGCACGGAGACGTTGCAATCAAGATCCTTAAAGTCACTGAACCAACGCCTGAACAGTTGCAGGCCTTCAAAAATGAAATGCAGGTCTTACGGAAGACCCGCCACGTCAACATCCTGCTGTTCATGGGCTATATGACTAAGCCCAACTTCGCAATCATCACACAGTGGTGTGAAGGCAGCAGCCTGTACCGCCATCTGCATGTCACAGAAACCAAGTTTGACACTATGCGTCGCATTGATGTGGCCAGACAAACAGCACAGGGCATGGAtTATCTTCATGCGAAGAACATAATTCATCGAGATCTGAAATCAAACAATATTTTTCTCCATGAGGGCTGGACTGTTAAGATTGGTGACTTTGGCTTGGCCACAGTGAAGTCTCGGTGGAGCGGCTCTCAACAGGTAGAACAGCCCAGTGGATCCATTCTGTGGATGGCTCCTGAGGTGATCCGAATGCAGGACAGCAACCCATATACGTTCCAGTCTGACGTATACGGCTACGGAGTAGTGCTGTATGAGCTGATGTCAGGGACCCTGCCTTACTCCATTATCAACAACAGAGACCAGataatCTTTATGGTTGGACGTGGTTACTTGTCTCCAGACCTCAGTAAGCTGTCTAGTACCTCGCCCAAGTCAATGAAAAGGCTTATCATTGACTGCCTGAAGTTCAAACGTGATGAGAGGCCCCTGTTTCCACAGATCCTGGTAGCCATTGAGCAGGTTCAAGACCTGCTGCCAAAAATTGAGCGAAGTCGCTCCGAGCCGTCGCTCCATCGGGCCGTCCACGCAGAGGACCTGAACCCCCTTTTGTTCCACACCACCAGGCTGATGCCCCTCTAAGCTCCCAACAGCACGGGACAGAGAGGTCGTCACACTGTCCAAAATCAGACCACAAGCCCCAACTCACTCCCTACCCCCGCAGAGCCCGCGAGCTGCCCCACACAGTGCGAAACTCAGTAACTGCAGAAATAATGGCAACACACTGTTTAGACTGATAGTGAATCTTCTTTTCCTTTGTACACGTGACAAAGATCTGCCCAAGTGAAATAACTCTCTACTGTATCTTGTAGGATGTTAAAATGCCTACTTGAGAAAAGTCATCAAACGGTTTGCTTTACATACTCTGACCTACTAGGAGGCATTTAAATTGTTCTGAGGAAATGGTAAAAAACAGACATGTTTTGCACATACGCTGCAAAATTGTGTTGCCCATTTTcagtagtaaaaaaaagtcttactCAGACCTTTAAGAAGCACTGTGATCATagtcaaaatatttaaattgGTTCAACAGCCATAATGCTGGATCTGCTGGTTCAGGTCACCTGATCAGCTTACATATTTCAAATGCTCAGTTGTCATGCGTCCCTTTCAGTTAGCCTTTCAGTCAACATGCGATGGGAGATCTGACATGTGAAGGTAGTGATTTGAAAGCAAACGCAGTGCCTGTTTGGGAGTGCTTTGTAAAACATAGGACATTTTGTCTCAATGGGAACCTCCACTATCCGCTGCTTTTGCAAATATTTCAGTGCTAGaatttttgttgtatttaaccacaacaacaaatcaacatgaggaggaagagaaaactCAACCTTTTGGAAGCCTAGAATAGATGGGCAACCTCAAACACTAAATGTAAAAAGTGTTTAGTAAAAAAAGgtttagtaaaaaataaaaaaagaatagttAATTTGGTGAATGTGGctctgcacatactgtatagcaGTGACAGGTGTGTtgcaaatcaaaatcacatttttttaacaccTCAGAATAATTATGTAATAAGAATCTCATGTGGACGGACATACTCAAATCACCAAGTTCTTTTTAAACCCGAGTTTCCATTGATGTTGCAATGAACTCAAAAAGAGCACTTGACATGTGAAAGTTGAACAGTTAACTCAGCAGGGCCTTGTAGGCTGTAGTTCaaaatcaaatgtgtttttttcctgttttgtctGAGGGGTAAAGATGTGCATTGTAATTCATATTCAATTCATAATAGGCCAAGTTCATCTGGTTTCACACTACTTTGAAGAAAATTAGTTAGTTAATTAATCAGCTAAAAGTTACTTGTAAGATGATTTACCTTACCCCACTGGGTTTTCTTTCAGCTTGTATATAAGTTCCATCTGAATACAGGATTAAATTGTTAGGACCAACATTTTTGCAGTGTACTGTACATAAAAGGGCATGTATGATTTAATTTGTCATTCTGATATTTAACATTTCTAAGATTCCGAAATACAAGGTTTAACAATTTT

Function

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0006468 protein phosphorylation biological_process
GO:0005057 obsolete signal transducer activity, downstream of receptor molecular_function
GO:0005524 ATP binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG:

id description
K08845 ARAF, ARAF1; A-Raf proto-oncogene serine/threonine-protein kinase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU79489 lncRNA upstream 2273 4433093 ~ 4435260 (+) True G59174
TU79470 lncRNA upstream 87614 4349566 ~ 4349919 (+) True G59163
TU79435 lncRNA upstream 108073 4307919 ~ 4329460 (+) True G59132
TU79389 lncRNA upstream 304469 4132848 ~ 4133064 (+) True G59093
TU79333 lncRNA upstream 476214 3961060 ~ 3961319 (+) True G59042
TU79492 lncRNA downstream 5120 4461364 ~ 4462824 (+) True G59175
TU79554 lncRNA downstream 97777 4554021 ~ 4555654 (+) True G59217
TU79552 lncRNA downstream 98298 4554542 ~ 4555451 (+) False G59217
TU79556 lncRNA downstream 100761 4557005 ~ 4558065 (+) True G59218
TU79568 lncRNA downstream 115908 4572152 ~ 4618033 (+) False LOC120560573
XM_039802033.1 mRNA upstream 48738 4357094 ~ 4388795 (+) True npr3
XM_039803329.1 mRNA upstream 93863 4271504 ~ 4343670 (+) True pdzd2
XM_039803330.1 mRNA upstream 93863 4271504 ~ 4343670 (+) False pdzd2
XM_039803331.1 mRNA upstream 93863 4271504 ~ 4343670 (+) False pdzd2
XM_039803676.1 mRNA upstream 210501 4226036 ~ 4227032 (+) True LOC120560812
XM_039802391.1 mRNA downstream 73810 4530054 ~ 4531159 (+) True mrpl41
XM_039803219.1 mRNA downstream 115139 4571383 ~ 4617968 (+) True LOC120560573
XM_039803221.1 mRNA downstream 115139 4571383 ~ 4617968 (+) False LOC120560573
XM_039803222.1 mRNA downstream 115140 4571384 ~ 4617968 (+) False LOC120560573
XM_039803220.1 mRNA downstream 115140 4571384 ~ 4617968 (+) False LOC120560573
unassigned_transcript_242 other upstream 4794 4432668 ~ 4432739 (+) True trnaq-uug_2
unassigned_transcript_241 other upstream 5280 4432171 ~ 4432253 (+) True trnal-aag_1
TU79482 other upstream 7552 4424141 ~ 4429981 (+) True G59172
TU79382 other upstream 319902 4117279 ~ 4117631 (+) True G59086
TU78941 other upstream 1557789 2878401 ~ 2879744 (+) False lman2lb
TU79509 other downstream 73866 4530110 ~ 4531165 (+) False mrpl41
TU79671 other downstream 597022 5053266 ~ 5351131 (+) False fbrsl1
TU79728 other downstream 991892 5448136 ~ 5453494 (+) False golga3
TU79729 other downstream 991892 5448136 ~ 5453494 (+) False golga3
TU79733 other downstream 1038911 5495155 ~ 5497754 (+) True G59347

Expression Profile