RNA id: XM_039802813.1


Basic Information

Item Value
RNA id XM_039802813.1
length 2608
RNA type mRNA
GC content 0.50
exon number 6
gene id ccn1l2
representative False

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 12831272 ~ 12837907 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ACTGCAGTGGAGAGGACAGAGCCCGGCTGGTTGGCCAGAGCTGGTGAAAGAGTTGTTCACAGGGATTTTCTCCACATCACCACTTCCCCTGTTAAAGACTCTACCATGATGGAGTGGGATTCCACACTCAGGTTTTCCattacacctgtcttaaaattgttttctttttttttcttgcagatATCCCTGGGTATGTGTGAGGCTTACGATTACCCTTAAAGCCTAAGCCGTCTTGAGAGGAGAGTCGATGATATCACAGCGGGGGCGGGGGCATGTGTGTCTATAAGTACAGGCACAACACAGGGAAACCTCTCTATGAAGTAGAGCTGAGCTGTGCTGACAACAAGATACTGTAGGAGAGCAAGCAAGAGCAGACGGGTGTACTTCTTGGTGCATAGACTCTGAACTGTGGATACTCTTTTTTTATCCTGGAGCTGACAAACAAGACTTCTTTCTTCTAGGGACTTTGGATGGTCGATCAAAAACTACTTTACTCTACATTTCTTTATTCCTTTGGAAGGTTTTActagttttttctctttttgttcatCTGCTGTAATCAAGATGCTTAGCCCCGTTACTTTGCAGCAGATCATTTCCACCCTGCTTGTGCTCGGCAGCGCTGCAGTGATGGCAGAGAGGGCATGCCCGGCGGAGTGCTCCTGCACCCCCTCGCCCCAGCCGTGCCCGCTGGGTGTCAGCTGGGTGACCGACCACTGTGGCTGCTGTAAAGTTTGTGCTCGGCAGTTTAATGAGGACTGCAGCGCCACCGAACCTTGTGATCACATCAAGGGGCTACGCTGCCATCTGGGGGCTGGAGGAGAACCTGAGAGAGGACTGTGTCGAGCTGAGGCCCAGGGTTTGCCCTGCGAGTTTGGCGGGCGGGTGTACCAGCATGGCGAAGACTTCCAGCCCAACTGCCAGCACCAGTGCACCTGTATGGACAGGGTGGTGGGCTGCATGCCCCTCTGTCCTCCCCAAGTGCCACTGCCCGACTGGCGCTGCATGCGGCCCCGGCTCGCCAGGCCCGAGGGCGGCTGCTGCGAGGAATGGGTGTGTGATGACAACAACCACATCAGTGAGGAGCCAGACGAGCTGACACACACCTCCCTGCCAGACAGCAAGCCTCTTCCCAACCACATCAGTGCCTTGCTGCATGCCCAGCCGCAGCCTCGGCACCCAGCTGCCACCGGAGGGGCCACGTTCAGAGAAATAGTGTCCTTCCCCATGTCTGAGGTTTTACTCAAATCCAGCTGTTTCCCACAAATCACAGAGTGGACCGACTGTTCCACCACATGTGGGATGGGCATTTCAAGTCGGGTGACCAATAACAACCCAGGCTGTCGACTGGTCAGAGAAACCAGACTGTGCCAGATCCGGCAATGTGAGCTGCAGCTCCCTGCAGCTAGCAAGAAGGGGAAGAAGTGTCAGCGAACTGTCCGCCCCCAGGAATCGGTCCCAATCACTTTTGCGGGATGCTCGACGACACAGTGGTACCGCCCTCGCACCTGTGGGACTTGCACTGACGACCGTTGCTGCACACCCTCCCTCTCCCGCACTGTGCGGCTCCGCTTCCACTGCCCTGACGGAGAGGGCTTCTATAGAAATGTCATGTGGATCCAGCGCTGCAGTTGCAATACAAGCTGTCGTATACCAAGCGGGCCCTCCAGCCCTTCAGTCAGCCTCCACAACGACATCCACACCTTCAGGCACTGAGGCCGACGGGTTCCTGCCCAGCGCTGGCCTGGCACACTGGGCAAAgactccccctccccctcaccCCCCCAAACCACCACCAACCCCCACTCCTGCCACCCTCCTCCCCAACAAGGCAATACACTCGCTTGCACTTTAAGCTTCCTGCCACAATGACATCAGTTTGTCCACACTAGAGGTGTGTTACTCCTCTAGTACCAGGGCAGCTCTGAGGACAGCACTCTgcagtgtgctgctgtgttAGACTGTTGGCAGAGAGCTTTTACTGAaacttcttttatttaattgtaatttTGTATCCTCCACGCAGAGGGCGATGTGACAATTTGTCATACAGAAAGAAGGTTTTTTAGACCAGTAACAGAGAACATTTATGAGAAGTGATGGGGAATTATGGACATGCATTTTGAATGATGAGGAAGAACTAGATGACATAACACATTCATTAGAGACTAGAGGCTATGTGTTCTTTATTGCCTGTCCTTTGTGATAAAATGTttatctgtatgtgtgcatgtatgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgtgtgaaagtGTATTGGTATGTTTGAAGAATGAGAAACTTTCCCAAGTGAGAGTTTACAGAGAATGTGCTCATTATGCTACTACAGTATATAGATGAaagtatatagtgtatatgGACTTCACTCTTGGTTGTGGAGTGGTAAATTCTATGATCACCTCATTTTTCGGggtgtgattttattttgtatttgtttgcgTGCGTGTCCTTCACAATGTACATACAATGCTTTGTTTAAGGAATAAAAAGATGCTAAATATTTAAGACATGTTACACATGTTCATTGGacgttttttttgttctatTAACTTCTGCACGTCAAATAAAAACGTATCAACCTGTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU81877 lncRNA upstream 149204 12679709 ~ 12682068 (+) True G61091
TU81853 lncRNA upstream 192412 12638608 ~ 12638860 (+) True G61067
TU81834 lncRNA upstream 221814 12609104 ~ 12609458 (+) True G61053
TU81833 lncRNA upstream 223215 12607644 ~ 12608057 (+) True G61052
TU81831 lncRNA upstream 227062 12603756 ~ 12604210 (+) True G61050
TU81962 lncRNA downstream 161552 12999459 ~ 12999887 (+) True G61160
TU81973 lncRNA downstream 332886 13170793 ~ 13180491 (+) False LOC120560904
TU82004 lncRNA downstream 343675 13181582 ~ 13182257 (+) False G61192
TU82005 lncRNA downstream 343675 13181582 ~ 13182308 (+) True G61192
TU82008 lncRNA downstream 344712 13182619 ~ 13184450 (+) True G61194
XM_039802808.1 mRNA upstream 36841 12752510 ~ 12794431 (+) False fkbp15b
XM_039802810.1 mRNA upstream 36841 12754699 ~ 12794431 (+) False fkbp15b
XM_039802807.1 mRNA upstream 36841 12754700 ~ 12794431 (+) False fkbp15b
XM_039802806.1 mRNA upstream 36841 12754701 ~ 12794431 (+) True fkbp15b
XM_039803771.1 mRNA upstream 82736 12740866 ~ 12748536 (+) False fgf17
XM_039804579.1 mRNA downstream 22683 12860590 ~ 12865252 (+) True si:dkey-90l8.3
XM_039803769.1 mRNA downstream 71907 12909814 ~ 12932999 (+) False bcl2l16
XM_039803768.1 mRNA downstream 71907 12909814 ~ 12920471 (+) True bcl2l16
XM_039803795.1 mRNA downstream 294191 13132098 ~ 13180369 (+) True LOC120560904
XM_039804576.1 mRNA downstream 511234 13349141 ~ 13366210 (+) False lhx2b
TU81647 other upstream 904671 11926183 ~ 11926601 (+) True G60897
XR_005639564.1 other upstream 2078832 10748116 ~ 10752440 (+) True LOC120561144
XR_005639563.1 other upstream 2078832 10748116 ~ 10752440 (+) False LOC120561144
XR_005639565.1 other upstream 2078832 10748116 ~ 10752440 (+) False LOC120561144
XR_005639562.1 other upstream 2084324 10726446 ~ 10746948 (+) False LOC120561142
TU81938 other downstream 83240 12921147 ~ 12923836 (+) False G61139
TU81939 other downstream 83240 12921147 ~ 12923836 (+) True G61139
TU82171 other downstream 1269576 14107483 ~ 14109546 (+) True G61337
TU82172 other downstream 1303535 14141442 ~ 14142050 (+) True G61338
TU82219 other downstream 1445510 14283417 ~ 14283871 (+) True G61383

Expression Profile