RNA id: XM_039802844.1


Basic Information

Item Value
RNA id XM_039802844.1
length 2387
RNA type mRNA
GC content 0.53
exon number 19
gene id slf1
representative False

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 15777243 ~ 15811420 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCCAGCTGTAGTTCACACAAGTCGAAATTGAATACTGGTTGTATGAACAAGAACCAAAGCCGATTTTTGGTTATTTCACCAATACTGAGACTGATGGCGAGCTGCACGCACGTTTTCCAGATCTCTGGGATCAAGATCCGTGATAAGAAGAGATTTTTGGTCCAGAAAATCCAGCTTCTGGGTGGAAAATACATAGGTGGCTCAGTCTATCAGCACGCCATCACCCATCTGATAATCCCTCAGGTTTTGTCCAGCGAGAAGTTTTTGGCTGCCTGTGCTGCAGGAAAGTGGGTTGTGACCCCAGACTATGTGCTGGACAGTGTTAAGAATGGCTCCTGGCTCGCAGAGGGACCCTATGAAGTTGCCATTTCCACAGGTGCCACGTCTTCCGTCTACCCGGTCAGGCATTGGAGGGAGAAGGTGGCCAGTGGGAGGGTAACAGGGGCCTTCGAAGGCTGGAGGGTTCTCCTCATGGTCCAAGAGCCCACCCGTAGGGCCATGTTCAAACGGCTCCTAAAAGCAGGCAGGGCCCAGGTATACCACTGCCCTCCACCCTCTCATGCCTCTGTTACTCATGTCATGGCTAAACCCATCACAGAGGACTCCAGATACCACAATGCTCCATGCTACCCTGTTAGCCACATTGTCCAGCACCTCTTTGGGAGCAATTGTGTGGATATGAAGTTCAACGTAACGGATGATCATCCAGCAGAGACGAAGACGTCCGGTTTTGTTGATGTGGACTTCTCCAAACTGGAGACGGAGCTCAGGGACTATGCCATCAAACAGGAgGGCCGGCCGAGACTGTGCTTCCTAGAATTTCTGGGTTACCATGACCCGTACCATCTCCAGTCCCAGGCTACAGAAACAGACTTCAGCAATGTTGGTAGTATGATAGAGTGCGGCCTCTTCATTGACGCCTTGGACTCCATTAGAGGTGCTGTGTTCCCAGGCCTGCTGCCACCAGCGGCATACCTGGTCTCCCTCCTAGAATATGCACAGCAGGGTAGCGCCACATCCGTCTTCCTGAGAAATTTCCGGCAGGTCATGTACAACCTGCTTATTACCAACCCTCCCTGGCTGGCTCCCACCGCAGTGAAGAAATATTTCACCCAGGTGTTGCAGTGTCCTCGGTGTAAGACAGGCCTGTGGCCTTTTCTGGAGACGGCCATCAGTTACTGCCTGTCCAGTGAGGTCACTTGTCACCCACTCCCTGGGCCGGCCCTGCCAACACTGTTACATTTCCATAGTGACCTCCTGGCATTTTTCCTCAAGCTCTTCCAGGGGGAACTCCACTCTGTCACAACCGGCGATTTTATGCTGCCTGGGGGAACAGGAGGCTCTAAGGGTTCAGCATCAGGATCTTTGCTGTATGGAACCTTCTGGACTGTGTGGGAGCGCTCCACGCTGTTGTCCAAAGCTGTGAAACAACTAACCCAGCTCTTGGTAAAGGCTGTCATTGAGGACGCTGAGAGGGATGAGAAGCAGAAGCTGCATTTGGCGGACACCCTGCTGGACCTCCTCTCTGTGTTGGTGGAGTTCTGGTGTCAGCAGCACTTCAAACTCAACCAGAACCTGGTTGATAAGGGGCTAAAAGACCTAGCAGAGCATTTTGCTGTTATCAGCCAGGATGTGTCTCCAGTGGTCATGGCAGAACAGCTGGCTGTCAGGATTCGCTCCACCAGACTTAAGTTGGCGATGGTGGATGCTATATTCAGGATTATTTGTTGCAGGAATGGATTCACAGTTGGAGATGAACCCCTGTCTCTCAagaaaatgGTGCTGTCCTACCTGCCTGCTCTTGGAAGTTTAGCTCAGAGTGCCACCAATGCTAGCCTCAGGACCAGACCCACCTCCCACAGCTGCACCAGCCAGGGGACCGGCTGCAGTGCTCAGAGCTCATTGGTGAATAATACAAGCCCAGAGCAAGAGAACATCCCCAGAGGTCTGAACAGAGTCAATGCAGCAGGagagaccctcctccacagagctTGCAAAAGGAACCAAGTGGAAACAGTGCTTCAGATCCTGGCGCTTCCTGGCACGGACATCAACGTTAAAGGGTTTCGAAGAGCGATTAACAttgggagggggaaaaaagagACCATGCAGGCTGGACCCCTCTGCATGAAGCGTGCAACCATGGCAGCATTGCGTGTGTGGAGGCTTTGCTACGTCACCGCCCTGCACCTGTGCTTAATAACCAGGTGGGTGGAGTCAGTCCACTGCAGGACGCCGTGCTAAACGGACACATGGACATCGCCAAAATGCTACTTGAGCATGCAGGTGCTGTATTTATCTCCACTGCAGCATATCTGACACCCAGCGCCAATACCTGGATTCACTTCAGTCGCAGTCCCTGCACCAAAACCATTCCCCAGCCTCTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU82980 lncRNA downstream 4943 15773679 ~ 15777138 (-) True G61956
XR_005639525.1 lncRNA downstream 237730 15541832 ~ 15544351 (-) True LOC120560849
TU82900 lncRNA downstream 319160 15458833 ~ 15462921 (-) True G61894
TU82830 lncRNA downstream 354586 15425551 ~ 15427495 (-) True G61837
TU82801 lncRNA downstream 476014 15303729 ~ 15306067 (-) True G61813
TU83024 lncRNA upstream 126815 15937976 ~ 15939248 (-) True G61993
TU83027 lncRNA upstream 171715 15982876 ~ 15983411 (-) True G61996
TU83032 lncRNA upstream 285260 16096421 ~ 16100383 (-) True G61998
TU83037 lncRNA upstream 306066 16117227 ~ 16141681 (-) True G62001
TU83054 lncRNA upstream 341888 16153049 ~ 16155689 (-) False LOC120560105
XM_039803979.1 mRNA downstream 147575 15622929 ~ 15634506 (-) True fam81b
XM_039803978.1 mRNA downstream 147903 15622929 ~ 15634178 (-) False fam81b
XM_039803839.1 mRNA downstream 159853 15615792 ~ 15622228 (-) False LOC120560939
XM_039803838.1 mRNA downstream 159853 15615792 ~ 15622228 (-) True LOC120560939
XM_039803735.1 mRNA downstream 179810 15591346 ~ 15602271 (-) False LOC120560853
XM_039802851.1 mRNA upstream 313327 16124488 ~ 16132946 (-) False nr2f1a
XM_039802850.1 mRNA upstream 313327 16124488 ~ 16132944 (-) True nr2f1a
XM_039802276.1 mRNA upstream 341259 16152420 ~ 16452488 (-) True LOC120560105
XM_039804539.1 mRNA upstream 701216 16512377 ~ 16519316 (-) True aqp3a
XM_039803786.1 mRNA upstream 720491 16531652 ~ 16546472 (-) True nol6
XR_005639521.1 other downstream 379757 15369827 ~ 15402324 (-) False LOC120560838
XR_005639520.1 other downstream 379757 15369827 ~ 15402324 (-) False LOC120560838
TU82789 other downstream 549392 15225095 ~ 15232689 (-) False LOC120560831
TU82785 other downstream 563672 15216550 ~ 15218409 (-) False sdhaf1
TU82671 other downstream 740717 15036979 ~ 15041364 (-) False tti2
TU83104 other upstream 693465 16504626 ~ 16505067 (-) True G62064
TU83119 other upstream 737461 16548622 ~ 16550256 (-) False LOC120561322
TU83120 other upstream 737461 16548622 ~ 16551175 (-) False LOC120561322
TU83121 other upstream 737461 16548622 ~ 16550256 (-) False LOC120561322
TU83278 other upstream 1312835 17123996 ~ 17124477 (-) True G62194

Expression Profile