RNA id: TCONS_00074570


Basic Information

Item Value
RNA id TCONS_00074570
length 547
lncRNA type retained_intron
GC content 0.43
exon number 3
gene id XLOC_038006
representative True

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 34872733 ~ 34882516 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CCCAGTGTCTCTGCATGGATATATTCTCCACTGCAATGATATGGTGTGGCCTCTGTTCAGTCATCTAGAGAGCGCTGTAAGGGAGGGCACCAGCCAACATGAGCGGGCCTTTGGAAAGAAGAAAGAAGACGTGTTTCAGGTAAACACGATTTGATCACCCATGAATTCTTGAAGTTACTGACATTTTATTACTGAGTAATACTGTTTTGTTGATTTCTAGGATGTTTATTACAGTAAAGATGAAGTTAAGATACGGTTCATGGATGCAATGCACAGCATCGCAAGAGTGACTGGAAAAGATCTGGCAACCGCATTCGATCTCTCATGCTACAAAACAGCTTGTGATATCGGAGGTTGCACTGGTGCCATGGCATACGAGTTTACAAAAGCACACCCTGAGTTGTCAGTTACTATATTTGACTTGCCACAAGTCATCGAGATGAGACGTCATTTCCAGCCGAAAGAAAATGATGAAAGAGTGTCATTTGTTGCAGgaGATTTCTTTAAAGATGACCTACCTAAAGCAGACCTGTATATTCTTGCACGG

Function

GO:

id name namespace
GO:0032259 methylation biological_process
GO:0016740 transferase activity molecular_function
GO:0008168 methyltransferase activity molecular_function
GO:0008171 O-methyltransferase activity molecular_function
GO:0047429 nucleoside-triphosphate diphosphatase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-2854 Predicted to enable nucleoside-triphosphate diphosphatase activity. Predicted to act upstream of or within methylation. Orthologous to human ASMTL (acetylserotonin O-methyltransferase like).

Ensembl:

ensembl_id ENSDART00000143984

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00074563 lncRNA downstream 62020 34701942 ~ 34812883 (-) False XLOC_038001
TCONS_00074565 lncRNA downstream 62020 34773621 ~ 34812883 (-) True XLOC_038001
TCONS_00075414 lncRNA downstream 62021 34592026 ~ 34812882 (-) False XLOC_038001
TCONS_00075416 lncRNA downstream 62021 34628721 ~ 34812882 (-) False XLOC_038001
TCONS_00075417 lncRNA downstream 62021 34712779 ~ 34812882 (-) False XLOC_038001
TCONS_00074574 lncRNA upstream 31563 34908935 ~ 34915388 (-) True XLOC_038008
TCONS_00075419 lncRNA upstream 276683 35154055 ~ 35160615 (-) False XLOC_038013
TCONS_00075004 lncRNA upstream 277458 35154830 ~ 35161005 (-) True XLOC_038013
TCONS_00074592 lncRNA upstream 754921 35632293 ~ 35633657 (-) True XLOC_038015
TCONS_00075420 lncRNA upstream 803596 35680968 ~ 35832754 (-) True XLOC_038016
TCONS_00074568 mRNA downstream 3003 34866576 ~ 34871900 (-) True XLOC_038005
TCONS_00074566 mRNA downstream 32489 34836068 ~ 34842414 (-) True XLOC_038003
TCONS_00074560 mRNA downstream 364906 34485048 ~ 34509997 (-) False XLOC_037999
TCONS_00074559 mRNA downstream 367223 34484454 ~ 34507680 (-) False XLOC_037999
TCONS_00074561 mRNA downstream 374706 34488163 ~ 34500197 (-) False XLOC_037999
TCONS_00074571 mRNA upstream 7561 34884933 ~ 34885902 (-) True XLOC_038007
TCONS_00074572 mRNA upstream 25599 34902971 ~ 34915394 (-) False XLOC_038008
TCONS_00074573 mRNA upstream 25894 34903266 ~ 34915351 (-) False XLOC_038008
TCONS_00074575 mRNA upstream 42629 34920001 ~ 34937256 (-) False XLOC_038009
TCONS_00074576 mRNA upstream 54506 34931878 ~ 34937025 (-) True XLOC_038009
TCONS_00074567 other downstream 23099 34848860 ~ 34851804 (-) True XLOC_038004
TCONS_00074564 other downstream 121744 34753044 ~ 34753159 (-) True XLOC_038002
TCONS_00074544 other downstream 953332 33921464 ~ 33921571 (-) False XLOC_037985
TCONS_00074543 other downstream 953879 33920932 ~ 33921024 (-) True XLOC_037984
TCONS_00074537 other downstream 1090396 33783555 ~ 33784507 (-) False XLOC_037982
TCONS_00074593 other upstream 824283 35701655 ~ 35701772 (-) True XLOC_038017
TCONS_00074595 other upstream 1241588 36118960 ~ 36120526 (-) True XLOC_038020
TCONS_00074596 other upstream 1883517 36760889 ~ 36761294 (-) True XLOC_038023
TCONS_00074597 other upstream 1888251 36765623 ~ 36766028 (-) True XLOC_038024
TCONS_00074598 other upstream 1892985 36770357 ~ 36770663 (-) True XLOC_038025

Expression Profile

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