RNA id: XM_039802855.1


Basic Information

Item Value
RNA id XM_039802855.1
length 6078
RNA type mRNA
GC content 0.47
exon number 25
gene id agtpbp1
representative False

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 21428343 ~ 21458347 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TAGCGTGCAAGGGGAGGTGCTGATTACTAAGTTCATGGTGTCCTGCCCCTAAGCTCAGTGTTTGGTACACAGTTGGAGGTTTGACCAGTGAAGCAGTTTACTTGTAGCCTTAGAGGGatggagaaataccattgaaagaCTAGCAAACTCTTAGGCGTTTAGATTCACAGCAGACCTGCACAACGTTTTGGACTCCAGAGGCAGTGAACCTGGGATTTTGGAAAACGGAACATTTTCTCACCCAAAGCTTTGGCGAACTTTGAGACCTTTTGTTATGAAATGGAGTACCGCTACACCAGGACATACTATCAATCAGTGGTCTCCCCAGACCCCCCAGAGAAGAGCGGGAAAGAGGTTATGTCCAAAGGTTCCAGTGGCATGGAGGTCATCCTGGCTTCACTGGAGAACACCAGGGATGTCCAGACCACTCTTAACATTTTGTACATTCTCAGTGAGCTGCTGACTGTGGGCAGAGGTCGCAGGGTGGGAGTATTTGTGTCTAAAGGAGGAACAGGAATATTATTCCAGATTCTGATCACTGCCATTAAAGAGTTGCCTCCCAGTGAAGAACTCATGCTTCAGCTTCACTCACTGCTCGCCAAGGTTGGCCCAAAAGACCGAAAGTTTGGAGTGAAGGCGCGCTTGAGTGGAGCGCTGAACGTCACAGTCAACTTAATAAAACAGAACCTACAGAATACCAAACTGCTTCTGCCCTGCCTGCAGGTTCTCAGGGTTTACTCCACCAACTCGGTGAATGCTATTTCTTTGGGAAAGAACGGAGTGGTGGAGCTCATGTTCAAGATTGTCGCGCCGTACAGCAAGAAGAACACCAGCCTGCTTAAGGTAGCTCTGGATGCACTGGGAGCACTGCTCAAATCCAAAACGAATGCTCGCCGTGCAGTGGATGGTGGACATGTGCCAGTCCTGCTGGCTCTGTACCAGGACTGGCATCGCAATGACACACGGCATCGCCACATGCTGATTCGCAAAGGGCTGCTGGTCTGCCTCAGGAACATCACCAACATAAAGCTTGGCAGGAAAGCATTCCTAGACGCTGATGGCATGAGGATCCTCTACAACTCATCCACTGAGTGTCTCCCGGTGCGGACTCTGGATCCACTTGTCAACACTTCGAGTCTCATCATGAGGAAGTGTTTTCCTAAGAACCGTCTGCCTTTGCCCACCATCAAATCGGCCTTCCAATACCAGCTGCCACATGTACCTGCTGTCGGCCCTGTGGCGCAGCTGTACAGCCAGCCACCTGGGGGAAGAAAAAATCATCAGCTCTGCGACAGGCCCTTAAAGAAGGTGGACGATGTGGTGGATGAAAGTGATGATAACGAGGAGACCGACGCGGACACAGAGAACGATACTGAGGACGACGAAAAGGATCAGCGCACTGCGAATGATGACATAGAGACGGACCTAAACAAACTACATCCCAGAAAGAACCCTGGTCGTCCGTTCGAGGAGTTGAGGGTCTATGAGAGGTTTTTCTTGGAGCTTTCTGAAGACTTCCAGGGTTATAACTTTGAATCCTCAAAGAGTGCCTCTACCACATCATCATCTTTCTCCTCATCATCAGCCTCAACTCGATCCACTCGGCCAATCATAGTGCCCACAGCTCAAGCCCTGTCCCCAAAGCTTGCCCCCAAATCAGGCTCTCAGGCGGATTGTAACTCtaccaaaggacaacacacccTGCCGTCTCCTTCTGTGCCCACTCCTACTCCGCCTGCTTCTCTAACACCTCTAGAACTGGACACCATCCACCTCACCAAGGACCAAGACAAAAAAGAGGAGCCCCGGATTCCTTCCCCCGACACATGTACAACATTTTCCTCTCTCGCTAGGCCTCCTTCTCAAGGGCAGATGATAGAACAGGACCTAGCACATGTGTTGGAGTGTGTCTCTCTAGAAGAGGAGGGGGCTCTGAAcacaggagaaggaggaggaaggggagtcAAACAAGAAGGATCTCCAGTCAATGCCACGAGGCACATACAGTCTCCTCTGCTCTTGGGGGGCATCGCTACTCGTCGTGTGGGAGGAGGCGGAAGTAACTGGGGCTCAGATTGTGGCTCAGAGGGTGCTGAGGATGAGGGAGGGGAAGGAGCAGTCCTGGAGGTGCCAGACACAGCGCTGCTCCTCCCGCTGCATGACCCAGACCTTTATGTGGAGATGGTGAAGGGAACACACTCCGTACCCCAGTACGCTGAAGTGGCTTACCCAGACTACTTTGGCCATGTAGCCCCAACATTTAGGGAGCCCCTTCAGGAGAGAGTTTATGGTGTACAGAGGTCTAAAATATTCCAGGACACTGAGAGGTTGATTCATCCAAATGATATCGTGGACAAAGTAGTTTACGACCTGGACATTCCTAGTTGTCCTGTTATTGAAGATGATGGCGAATCACTGAAGTTTAACTCTCAGTTTGAGTCTGGCAACCTCAGGAAGGCAGTTCAGATTAGGAAATACGAGTATGACCTTGTGCTGAATTCGGACATCAACAGTAATCACTACCACCAGTGGTTCTACTTTGAGGTGAGCGGCATGCGTGTTGGAACCACCTACCGCTTCAACATCATCAACTCTGAGAAGTCAAACAGCCAGTTCAACTACGGCATGCAGGTGCTGATGTACTCTGTGCAGGAGGCGATCAGTGGCAGGCCTCGCTGGGTCAGAACAGGAACAGATATCTGTTACTACAAGAATCACTTTGCAAGGAGTTCCATTGCAGCTGGTGGTCAGAAAGGAAAGTCCTATTATACAATGACCTTCAGCACGAGCTTCAGCCATAAGGATGATGTCTGCTACTTTGCCTATCATTACCCTTATACCTACTCCACTCTTAAGATGCACCTGTCCAAACTAGAGGCTTTGAGGACCCCTGAGATATACCTGAGACAGGATGTCCTGTGTAAAACTCTGGGGGGAAACAGCTGCCCCCTTCTCACTATCACTGCCATGCCAGAGTCCAACTCTAATGATCACATCTGTCAATTTAGGAATCGTCCATTGATCTTCCTGTCGGCCAGAGTGCACCCTGGAGAGACCAATGCCAGCTGGGTAATGAAGGGCACGCTGGAGTTCCTGATGAGCACCAGCCCACTGGCAGCCAGCCTGAGAGAGGCTTATATCTTCAAGATCATCCCCATGCTCAACCCTGATGGTGTTGTCAATGGAAATCATCGTTGTTCTCTGAGTGGGGAAGATTTGAATCGCCAGTGGCAGAATCCAAATCCTGAGCTCCACCCCACCATCTACCACACTAAGAGCCTGCTGCAGTACCTTGCACACATACAAAGGGCGCCACTGgtGTTTTGCGACTACCACGGTCATTCCAGGAAAAAGAATGTATTCATGTATGGCTGCAGCGTGAAGGAGACAGTCTGGCAGTCCAATATCAGTGCTACGTCCAGTGACTTACAAGAGGACCTTGGATACAgggcACTCCCTAAGATACTGTCCCAGATCGCCCCTGCCTTCAGCATGGCGAGCTGTAGTTTTGTTGTGGAGCGCTCCAAAGAGTCAACAGCCCGCGTTGTTGTATGGAGAGAGATAGGAGTACAATGCAGCTACACCATGGAGAGCACGCTCTGTGGTTGTGACCAGGGAAAATATAAGGGTCTTCAGATCGGCACCAGAGAGCTGGAGGAGATGGGAGCTCAGTTCTGTGTGGCCCTGCTGAGGCTGAAGAGGCTGACGGGGCTCCGCAATCACCAACACCTGCTGGATTTGGAGAGCGATATTATTGGGACACAGGCTAAAGTAGTCAGCAGCAGCCCCACCACCTATGTGATGGAGGAGGACGAGCCGCCCTTTCTGGAGCCGATAGACTACAGCGCAGAGAGCAACGATGAGGACGCCGAGCCTGAAAACGAGCACGCCGCTGAAGTCCAAGGGAATCCCGATCACCTCGATCAACTGTCGGACTCTGAGACCAATCACAGGGACTAACGCTGAGGTTTTTATCTCCTCTATACCTGGCAATTTGAGCGTATAACCACCCAGTGCTTGGATTGTCAGCTGATCTAAAATTAAATGTTTCATAGGTGAATTAGTCAGAACTCGCTTCTCACTTTCACTGGTGAATAAATAGCTTAGATTTGCACCTGACCCTATTATATAGACACGTTATGATGGTCCGTAGGCTACAACAAGGTGCTCCTTTCCCAGATGGATTGATTTTGTTGGTCCACTGGAGTCAACTGTGTTGCTCAGTGAATGTTCTCACCTTTCACCGTCATACTATAGCCTTCATGAACTGTAACCCCTGACCTCAGACACCATATAGCCTCTGAGATTCACTTATAGCTAGCCAGAGCAGCAAACAGCAGGCACCGCCGATCCTTAACTTGAACCCTTGTCCACTCGCTCCTTTCTCACAGGCGGTCTTACACTGAAGCTACCAGACAAGGCTGTGGTAGCGTAGTAGAGCCAGTGGCTTCTGTAGGTACTGTGTTCGAAACCCTTCTCCCAAATCACCCTGTTTGGTTAAAACCGAAGGGAAACTGGATCTCCCCCACTTGACCAGCTTAGAGATCCAACCAACCTGCCTTCTTATTtcctttctccttcttttctttagTCTCACCCTGCACTTTAACTTTTTACTCCTTTTGGCGACACTTCCTTGTGTCCGTCCTtgctttcctctttcctttttttttttttttttttgacatgccaAGGTAATGGTGTCTAAATAGGATCCAGGGATGACCAAACAGCTTGAGCATAGCTTAGCTGCAAGTTAACGTCCGTCATCCCGAGTGTCTTATGGAGAAAAACCTACTCAGATGTAACTACACTTGAGTTGTGACCTCACTTCCTCTCTTTAACCCCTCCCTCTTCGGTCGCAGTGCACGTGGTCTGATTATCCATGTGCTGTTTGCCTTGCTTTATCCAAAACTGAAACTATTGATATCACAAATGTAGAATGTTCACGACTTTATCCAGACAAACTTGTACCATAAATGAAACGCCGATATAAACGCACACCACAAACTAACACAAGTCTGGTTTGTGTTTCTCAGTCACGTACAGCATTAAAAACATGAAGATGGAATGTAACATATCCACATGCACTGTtggtgttttcattgttttaactATAGACAGTATTATAATGTTAGACAAAGCGGTAACAAACACGACGCATGAGCTGCAGCGAGCAGAAAACCCTTTTGCACTTTGGATAAACACTATACACAAAACAAAGCGAAACAAACTGAATGGAACATCACTTTACAACAGTTTGCAAACTACAACTTTAGTCACCTTGTTAGTTTAAAGTTCTCAGAGCCCAGCCCAAAGCTGGTGGTAACATTGCTgtgatgttttaaaaaaaaacttaagactggaattttgtttcctttttatctGTTCCTCCAATCTGTGTGTACATTTTGTGGATTTGCTGAGGAGAGACCCTTAAAAGCAGATGGTGCTTTGTAATGAGAGTATGAAGTAGTTTGtttgagaaaaacatttttttttgtttatagaGATGAGGTACGTTTGTGTTGCATTTGTAAAGCTAGCGCATGGCtattttctgcttttattttgtaatttattaaGTATTGTTTTCTGGGAtgcaaacgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgcgcttttGTGTGAGCGTGCGTTTGCGTTTAACTTATTCCATTATTCAGCTCAGCTAATGCTCTTACAGTGTGTTTCTTCTTTCAATTTGATTATCCCCTCTCACTCTCCTTTACTCCCCACACATCATTTAcgctctctccttccatctaaACTCTTTCATTCCCTCGTTTTCTAACAACTTACAAACCCAGGGAGGTCATTGTTCTGGGCGTGTGTGTTTTAAGGATAAATGATGTGAAATAATGTCCCTATGAGAATTTTGTGTGCTGTTATATTTGTTTGTTATAGCAGGCTActtgttttatgtttgttttgagGTAAATAAGCAGTGATAGCGACTAATTTTAAGTTGGGATTGTAACGCAGAAAATTGAAACGTGAAGACAAgggaaataaaatgttaatgtgGTAAACTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU85205 lncRNA upstream 89933 21346367 ~ 21347517 (+) True G63576
TU85165 lncRNA upstream 123359 21312753 ~ 21314091 (+) True G63545
TU85120 lncRNA upstream 214799 21164816 ~ 21222651 (+) True G63511
TU85076 lncRNA upstream 776293 20660840 ~ 20661157 (+) True G63471
TU85071 lncRNA upstream 789953 20646239 ~ 20647497 (+) False G63468
TU85260 lncRNA downstream 21433 21479780 ~ 21484666 (+) True G63627
TU85261 lncRNA downstream 28422 21486769 ~ 21487038 (+) True G63628
XR_005639467.1 lncRNA downstream 150476 21608823 ~ 21620711 (+) True LOC120560273
TU85279 lncRNA downstream 157876 21616223 ~ 21618602 (+) True G63641
TU85373 lncRNA downstream 386485 21844832 ~ 21845138 (+) True G63714
XM_039803624.1 mRNA upstream 26720 21403963 ~ 21410730 (+) False golm1
XM_039803623.1 mRNA upstream 26720 21403964 ~ 21410730 (+) True golm1
XM_039804144.1 mRNA upstream 34060 21393773 ~ 21403390 (+) True LOC120561163
XM_039803803.1 mRNA upstream 154942 21278402 ~ 21282508 (+) True LOC120560913
XM_039802572.1 mRNA upstream 387601 20919639 ~ 21049849 (+) False si:ch73-72b7.1
XM_039803635.1 mRNA downstream 130529 21588876 ~ 21599289 (+) True LOC120560787
XM_039803638.1 mRNA downstream 130529 21588876 ~ 21599153 (+) False LOC120560787
XM_039803636.1 mRNA downstream 130529 21588876 ~ 21599034 (+) False LOC120560787
XM_039803637.1 mRNA downstream 130529 21588876 ~ 21599002 (+) False LOC120560787
XM_039802564.1 mRNA downstream 168665 21627012 ~ 21641536 (+) True hnrnpk
TU85087 other upstream 759534 20676417 ~ 20677916 (+) True G63480
XR_005639482.1 other upstream 948612 20477812 ~ 20488838 (+) False wdr31
XR_005639483.1 other upstream 948612 20477812 ~ 20488838 (+) False wdr31
TU84360 other upstream 1988500 19434907 ~ 19448950 (+) False rasl10a
XR_005639481.1 other upstream 2756289 18661157 ~ 18681161 (+) False acacb
XR_005639510.1 other downstream 130529 21588876 ~ 21598799 (+) False LOC120560787
TU85622 other downstream 1471552 22929899 ~ 22930205 (+) True G63905
TU85875 other downstream 2234315 23692662 ~ 23693291 (+) True G64108
XR_005639471.1 other downstream 3365371 24823718 ~ 24834631 (+) False cdc14b
XR_005639472.1 other downstream 3365372 24823719 ~ 24834620 (+) False cdc14b

Expression Profile