RNA id: XM_039802862.1


Basic Information

Item Value
RNA id XM_039802862.1
length 2865
RNA type mRNA
GC content 0.44
exon number 2
gene id LOC120560399
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 14255697 ~ 14260239 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTAATGGGGCCATGAGGCATCCTGCTCTTGTCCCTTATGCTTAGTTACAGTAAAGGGGGGTATTAGACAACAGTAATGCTGGCTGATCTGAGCACTCTGTCTGCTGTGTAGTCTGGGGGGATCACCATGGGGAGCACCAGCAAGGTGGCCAACTTGTGGAACAGGAGACCGAGTCTTTTCCCCAACTACAAAGTTGCGGATTCAGACATTAATCGAAGACCCTCGGAGATTGCCTATCCGCTGGCCAAGAAAAGCTGCATGAAGACATGGAACTCCATGCAGGAGCTGAGCAGGGACATCTACGACATTTATGCTGAGTACGAAGAAGAACAGGATGACAAAGCTATATATTGCTCTTCCAAGCATGTTTCACTCTCCAAGAAGAACTACATGATCAACATCAATGTAGGGGGTAAGCCCTACCAGATAGCCTACAAGACGGCCGCCAAGTATCCAAAGACCAGAATAGGACGACTGGCCACCTACACGGACCACAACATGAAGTTGGACTTGTGTGATGACTACATTGTGGCCACCAATGAGTACTTCTTTGACAGGGATCCAGATGTCTTCCACAGCATCTTCAGCTTCTACCGGACCGGTGTGCTGTGGATCAAGGACGAGTTGTGTCCCCGCAACTTCCTGGAGGAGATCAACTACTGGGGCGTGAGGATCAAGAACACCCACCGCTGTTGTCGCATCTCCTTCGAGGAGCGGCAGGATGAGCTGAACGATCAGCTGAAGATCCAGAGGGAGCTGGAGGCAGAGGTGGAGATCGAGGAGAATGAGGAGCTCTTCCATGACATGTTCATGGGCCAGAAGCGCAGAGCTATCTGGAACTTGATGGAGAAGCCGTTTTCATCCGTCAAGGCCAAGCTGATGGCGTTGGCCTCCAGCTTGTTTGTCCTGATCTCCCTGGTGGCCATGACTCTCAACACAGTGGAGGAGATGCAATACAGAACTCCCACAGGTCAGCTCAGTGGGAAGACATACTGGGAACACGTGGAGTCCATGTGCATCGCCTTCTTCACAATGGAGTTCCTGCTCCGTCTGGTGTCCACTCCTGACCTCAAATCCTTCAGCAGGAGCGTGCTCAACGTGGTGGACCTGATCGCCATCCTGCCTCAGCATGTGCAGGCCATCTTGGAGTTCTTTGACAATGAGGAGAATTACATGAAGCACGAGGCCGACATGCAGGCGGTGGGGCAGGTGGGAAAGCTGGGCCAGGTGTTGCGGATCATGAGACTGATGCGAATCTTTCGGATCTTGAAACTGGCACGACACTCCACAGGTCTGCGGGCCTTCGGCTTCACTTTGCGTCAGTGCTACCAGCAAGTGGGCTGCCTCTTCCTTTTCATCGCCATGGGCATCTTCAGCTTCTCGGCCATGGTTTACACTGTGGAGCATGACATGCCGCAGACAAACTTCACCAGCATTCCTCATGCATGGTGGTGGGCAGCTGTCAGCATCTCCACTGTGGGCTATGGCGACATCTACCCAGAGACCATACTGGGTCGTCTCTTCGCTTTCATCTGCATCTCTTTTGGAATCATCCTCAACGGTCTGCCCATATCCATTCTCTTCAACAAGTTCTCAGACTATTACTCTAAACTCAAGTCCAATCAGTACACAGCCTCCACCAAGAATCGGGGGAAGGTGAGATTTTCCAAGAGGACAATGAAAAGGCTCAACCACTGCTTTTGTCAAGCACactaatttcttttctttttttattaataaataatatgcTTTTGGCAGCTTTTGTAGTTGGGAAGCCAGTGGGGGATCACATGCTTCTATTCTATCTTCACTCTCTCCAAGGGTGTATGACTGACGGTTTTATGAAAATATTTGCTTTTTGTATACagatacatatttacatattttatatatactaCATTTCTGTCAAAAAAGAATTAATAGTCATAGTCAATAATTAAAAGTATCCACTAGTTTAGACTTGCTATTTACATCTATCTCTATATTATCATTTAGAGAAATTACACAAAACAGAGTTCCTTTTCAGTGGTAAACTCTTCATACCTGTCcatcattacaaattaaatgtatgtgTACCACCATTCTTAAAACCCACAACAGAATATTTCAATttacaaatatactgtattgaATATGTCATGTACAATTGTATGTACAATTTTGAAAACATGTATACAATGATGAAAAACACATctacaatatatacatttgatGTAATTATACAGCTGcacaaatgtgaatatttctcTATATCACATGGCTTCAGTGAAGTTGGAACAAGCATATAAGGAATATGCTTACATTTGATATTGTCACCCAATGTGGGAAGATGTTActtcaatttaaaatgtaaaaattgttTTATCATGTTTTACAAGCAGTCCTCTTTAATCAGATTCCCACAGCGAAAATGTGTAATATTGTCAACAGTTTGGGTGAAAATGTCAAACTTGTGGTTTGGTCTGGGCAATGGGGAATGAATGAAAAAGCTTTTACTATAACCAGAGCAGCTCTCAGGGAATTGATCTTTTTGTTTATCTACGATATAATTCTATGCCTAACTGATTTTTAAACATGTCCTTTTCAGAGACAGTTTACAATCATTAGTATAGATCTGAGTGAAAAATATTAGTTTCTTTATAATTGCAGCTGCAATGTCTTAAATCTGTGTGCTGTGCTCACACAGGAGATCTGCAGGGGCTTGCAAAGTGTACTTCACCTTCAATTACTGGTACTCCTTTACGTGTTTGCAATGTTTAATAGCCTATGAAGTATGCACTATGATTGACTTGCATTGCATGCAACTGTATGTCACACGATACAGTCTGATACTCTGTTATTAATAAACACTGTAGCTACTACTTA

Function

GO:

id name namespace
GO:0071805 potassium ion transmembrane transport biological_process
GO:0034765 regulation of ion transmembrane transport biological_process
GO:0051260 protein homooligomerization biological_process
GO:0008076 voltage-gated potassium channel complex cellular_component
GO:0005249 voltage-gated potassium channel activity molecular_function

KEGG:

id description
K04935 KCNV2, KV8.2; potassium channel subfamily V member 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005639479.1 lncRNA downstream 1194 14252255 ~ 14254503 (-) True LOC120560401
TU82265 lncRNA downstream 1217 14252253 ~ 14254480 (-) False LOC120560401
TU82249 lncRNA downstream 22259 14219347 ~ 14233438 (-) True G61404
TU82193 lncRNA downstream 77527 14177323 ~ 14178170 (-) True G61359
TU82169 lncRNA downstream 164947 14090475 ~ 14090750 (-) True G61335
TU82268 lncRNA upstream 21612 14281851 ~ 14282348 (-) True G61422
TU82269 lncRNA upstream 23936 14284175 ~ 14285887 (-) True G61423
TU82274 lncRNA upstream 53356 14313595 ~ 14313932 (-) True G61425
TU82283 lncRNA upstream 103484 14363723 ~ 14364326 (-) False si:ch73-138n13.1
TU82482 lncRNA upstream 127284 14387523 ~ 14387739 (-) True G61559
XM_039803876.1 mRNA downstream 6886 14246483 ~ 14248811 (-) True LOC120560956
XM_039802118.1 mRNA downstream 113439 14107403 ~ 14142258 (-) True htr7c
XM_039802083.1 mRNA downstream 283561 13963143 ~ 13972136 (-) True LOC120559998
XM_039804378.1 mRNA downstream 391257 13740353 ~ 13864440 (-) True nr6a1a
XM_039803905.1 mRNA upstream 28763 14289002 ~ 14312345 (-) False LOC120560975
XM_039803904.1 mRNA upstream 28763 14289002 ~ 14312345 (-) True LOC120560975
XM_039804492.1 mRNA upstream 54355 14314594 ~ 14317390 (-) False ctu1
XM_039804491.1 mRNA upstream 54355 14314594 ~ 14317354 (-) True ctu1
XM_039804463.1 mRNA upstream 57358 14317597 ~ 14319518 (-) True crybb2
TU82089 other downstream 666365 13589039 ~ 13589332 (-) True G61264
TU81433 other downstream 3065956 11189142 ~ 11189741 (-) True G60715
TU80745 other downstream 5853131 8401022 ~ 8402566 (-) True G60145
TU80531 other downstream 6368294 7879424 ~ 7887403 (-) False anapc7
TU80421 other downstream 6671178 7584086 ~ 7584519 (-) True G59881
unassigned_transcript_252 other upstream 678736 14938975 ~ 14939047 (-) True trnaa-agc_14
unassigned_transcript_253 other upstream 684257 14944496 ~ 14944568 (-) True trnaa-agc_15
unassigned_transcript_254 other upstream 688520 14948759 ~ 14948830 (-) True trnae-cuc_15
unassigned_transcript_255 other upstream 691263 14951502 ~ 14951583 (-) True trnas-gcu
unassigned_transcript_256 other upstream 707440 14967679 ~ 14967760 (-) True trnas-gcu_1

Expression Profile