RNA id: XM_039802874.1


Basic Information

Item Value
RNA id XM_039802874.1
length 2383
RNA type mRNA
GC content 0.48
exon number 9
gene id znf131
representative False

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 24174441 ~ 24181811 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATTGTCAAACGCGAAATGGCGAGCGTGCTAGGAGGCCCGTCAACGTTACATGCGACATTCTGGGGTTGTACCATGTTTATTTCCTTCGTGTTCCACTTTCGAAAAGATTGCATTGGTATATCTAGTCCTGAGAAGGATAAGGTCAATAATGGCGGctgaggtggaggtggaggtggaaggATGCAATGAGTACCCAGCGCATTACAAAGTCATGATGGACAAACTTAATGAACAACGACAGCTGGACCAGTTCACCGACATTACCTTGATTGTGGATGGACACCAATTCAGAGCCCATAAAGCAGTGTTGGCAGCATGCAGTCAGTTTTTCCACAAGTTCTTCCAGGATTTTACCCAAGAGCCACTGGTGGAGATAGAAGGAGTGAGTAACGCAGCCTTTAGCCAGCTGATGGAGTTCACTTACACAGCAACACTAGTGATAGTTGGAGAAGAGGAGGCCCATGATGTCTGGAAGGCTGCGGAATACCTCCAGATGCAGGAAGCCATCAAGGCGCTCAACAATAAGATGAATGAGAATCCCTCGCTGACAGCAAAGGGCAGAGGCAAAAAGAGGAAGATTGCGGAGACCTCTAATGTGATTACAGAAACCCTACCTTCAGTGGATGGGGATCAGGTGGAGATTGAGGTGATAGGGGAAGGGCCCATCAAGGTGGAGGAGTCTGGACTGGAGGAGGTGGTGGATGCAGCAAAGAATGCTCAGGCGGCATCAGATGACTCTGCTTTGGCTCTTCTTGCTGACATAACCAGCAAGTATCAGCAAGGGGAACCCACGCTACAGGAGGTGGTGTATCAGGAGGAAACGGTGACTgcctccaaggtgctggaaaatgTCGAGGTCGTAGAGGTCCAGATTTCCCAAGTGGACAACATGTTCCGCTGCAACAAGTGTGACCGTAGCTTCAAGTTGTACTACCACCTCAAACAACACTTGAAAACCCACCTGGGCATGCTTGACAAACCCCACGTGTGCAACCACTGCGGGAAAGCCTACACACGGGAGGGCGCCTTGAAGCAGCACATTAGCACGTTTCATTTTGATGCAGAAGAGCTGTCTCGAAACCAGAAACCCCAGAAGAAAGTGCATGTTTGTGAATACTGTAAAAAGCACTTTGACCACTTCGGCCACTTTAAGGAGCACTTGCGGAAGCACACTGGTGAAAAACCGTATGAGTGTCCAGATTGCCATGAGCATTTCGCAAGGAACAGCACACTGAAGTGCCATATGGCAGCCTGTCAGAATGGGGCCGGAGCCAAGAAAGGACGCAAGAAACTCTATGAATGCCAGGTCTGCAGCAGTGTATTCAACAGCTGGGACCAGTTCAAAGACCATCTTGTGAGCCACACAGGCGTCAAGCCCAACCACTGCACCATGTGTGACATGTGGTTCACCCACCCAAAAGAACTAAAGGCCCACCTAAAAGACGTCCATTCCATTGAGGACAACAAGTCATCGGAAGAACTGGTCATCACCGACTCTGCCGCACTCGCCATCGCAACGCAGAGCATAGAAGGAGGCGAAACTGTCCTGCTGGATGATGGAATCCAGGTGGAACACGTCACAGTGGAGCCTGTGGATGTGATGGAGATGGAGGAGACTGCAACAGTTGTGGTGGAGGATGGAGGGGTGGCGGAGATGTGTGAGGAGGACGTGGAGAGATTAAAGCGGGCCGGGGTGCAGATCCAGGTGGTGCACGTGACCACGACTGAAGTTGATGGGCAGCAGGTGGTGAACTCTCAGGTGGAAGTAGAGATGGAGGGTGAAATGGTGAGTGTTGAGGAGGCAGTACAAGCAGTGGTTGTATGAGAATGTCAAATGGACCGGTCTTAAAGGACCTGCAGGACACTCGTTCAGTCCTGAACAGCTGCAGTATCCTGTAGCTGACTTCTTTTCCATAAAGAACACTGCATGTGGGATACAGCATGTCCCCTCAAAATATGCCCTGCTGTCTGCCATCACATTGAATGACTTGATTTCCACCACCTCTTACTCTTTGAACTCTGCATTATGGACAGAGTTACAGAGAGAGATCATTTCCTGCTAATGAtcctgtatttattttaatgccGTTTGCCATCATATCATGTATTGTCGATGACTCCTCAGTGCTTCATCAATCTATTTTCATAAGTGTTTTTCCTGTGTCCTTATTTTACCTCAAACGTATATGTTCTTTTAGTTTGGGTCACTTGCCAAGACAATTTGACAAAGAATGAAATGTTCTTGTGGCCGCTCAAACAGCGTATGTATGGTGCTGATGTTCTTCAGTGCTAATGCTACAGTTTTGTTCAAGCTTATTTTCATATTgacttttggtgtttttgtagAAACTCGTATGGAATAAAAATTGGTTTCCAGAATGGA

Function

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0005634 nucleus cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU85984 lncRNA upstream 5153 24164677 ~ 24169528 (+) True G64200
TU85987 lncRNA upstream 6117 24164677 ~ 24168564 (+) False G64200
TU85970 lncRNA upstream 70329 24101506 ~ 24104352 (+) True G64188
TU85963 lncRNA upstream 115920 24049968 ~ 24058761 (+) True G64183
TU85948 lncRNA upstream 157613 24015078 ~ 24017068 (+) True G64172
TU86026 lncRNA downstream 52463 24234274 ~ 24234488 (+) True G64235
TU86043 lncRNA downstream 180664 24362475 ~ 24362909 (+) True G64251
XR_005639429.1 lncRNA downstream 333008 24514819 ~ 24518873 (+) True LOC120560123
TU86072 lncRNA downstream 639503 24821314 ~ 24822348 (+) False prxl2c
TU86073 lncRNA downstream 639503 24821314 ~ 24822348 (+) False prxl2c
XM_039803518.1 mRNA upstream 12211 24126863 ~ 24162470 (+) True ghra
XM_039803944.1 mRNA upstream 57498 24110320 ~ 24117183 (+) True fbxo4
XM_039803945.1 mRNA upstream 64492 24105990 ~ 24110189 (+) True c6h5orf51
XM_039802040.1 mRNA upstream 161197 24004082 ~ 24013484 (+) True rgs7bpa
XM_039802877.1 mRNA downstream 106 24181917 ~ 24202984 (+) True nim1ka
XM_039802876.1 mRNA downstream 106 24181917 ~ 24202984 (+) False nim1ka
XM_039802878.1 mRNA downstream 21711 24203522 ~ 24210442 (+) True creb3l3l
XM_039804577.1 mRNA downstream 31430 24213241 ~ 24215089 (+) True gadd45ga
XM_039804015.1 mRNA downstream 639507 24821318 ~ 24823066 (+) True prxl2c
TU85875 other upstream 481390 23692662 ~ 23693291 (+) True G64108
TU85622 other upstream 1244476 22929899 ~ 22930205 (+) True G63905
XR_005639510.1 other upstream 2575882 21588876 ~ 21598799 (+) False LOC120560787
TU85087 other upstream 3496765 20676417 ~ 20677916 (+) True G63480
XR_005639483.1 other upstream 3685843 20477812 ~ 20488838 (+) False wdr31
XR_005639471.1 other downstream 641907 24823718 ~ 24834631 (+) False cdc14b
XR_005639472.1 other downstream 641908 24823719 ~ 24834620 (+) False cdc14b
TU86491 other downstream 1503161 25684972 ~ 25696570 (+) False LOC120561182
TU86550 other downstream 1732571 25914382 ~ 25915529 (+) False LOC120560031
TU86770 other downstream 2231058 26412869 ~ 26414597 (+) True G64814

Expression Profile