RNA id: XM_039802879.1


Basic Information

Item Value
RNA id XM_039802879.1
length 8566
RNA type mRNA
GC content 0.49
exon number 54
gene id acacb
representative False

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 18661157 ~ 18685463 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTCATTTCCTTCTGCTGTCATGATCATGATTTAAACCGTAAAACCTTAACTGCGGACCGGTTCAGTTTGTGCGGAGTTTGAGATCTCGGTGGAGATAATTAGAAAGCGAAGCATGTAGTTGCATTTAAAATAACTCTGAATTTGCAAAAACATTCTCAATAATAATAAGTGAGTGCTAACTCGCTAGCCTGGTGAGTattgcagcaacaacaacaagactGAGCTGCTGTCCGTTATCTGTAGCGTCTCAGGAGGATGTCTATGAATGCTCCCTTTTGCAGTTTTAGGATTAATCCTATGGATATTGTTGCTACTGTGGAGGATTAATACCAAGGCCGTAGCGATGCCCGTGAAAGGAGAGGAATCTCCTTCTGGCTGTGGTCGGCCTGCAGCCGAGGAGGGCATGCCCGCTACACAGTCACCTCATCCGGGCGAACATTGCCTGTCAACAGTCCCTACTACCTCAACACACCATGAGGATAACCGTCCTCAGGCCAGCAGTGCCTCTGTGGGTCTTGAAGTTGAAACCGTGGACACTGAGGCTCTGCAGGCATCCTCTGAGGTAAACTCAGAAAAGCCATCATTGCGAGCGACCACCCAGAGACCTTCCAGAACTAAAGTGCCAATGCTCAGCTCAGGGCCTGAGGCGAGGGAACGCCTCAAGTTTATTCTCGGAGCATCGGAGGATAATTCTTCAGACGAGGAACCTCGGGTCACCAAACCTCCAAGCGGTGCATCTCAGCCACCGACCTCTGCCCCCAAATCGTCTCCTCAGCAGGCGTCCTCTGCAGTGCCACAGTCCAGCTCCTCAGGCATGAAGCCTAGCATGTCTGGTCTTCACTTGGTGAATAAAGGACATAAACACAGAAAGATGGATCTACAGAGGGACTTCACCGTGGCCTCTCCTGCTGAGTTTGTCACCCGATTTGGTGGCAACCGCGTCATCGATAAAGTGCTGATTGCTAACAACGGGATAGCTGCTGTCAAATGTATGCGTTCTATCCGTCGCTGGTCCTACGAAATGTTTCGCAATGAAAGGACCATCCGTTTTGTCGTCATGGTTACCCCTGAAGACTTGAAAGCTAATGCAGAATACATTAAAATGGCAGACCATTATGTGCCTGTACCCGGTGggtccaacaacaacaactacgcCAACGTAGAGCTGATAGTGGACATCGCAAAAAGAATCCCAGTGCAGGCTGTGTGGGCTGGTTGGGGTCATGCCTCAGAAAATCCCAAACTGCCTGAGCTGCTGGACAAAGCAGGAATATCATTCTTAGGGCCGTCCAGTAAGGCCATGTGGGCTCTTGGGGATAAAGTAGCTTCTGCCATTGTGGCTCAGAGTGCTGACATTCCCACACTACCATGGACCGGCTCAGGTCTGAGCGTAGACTGGGAAGAGGACGACCAATTCCTGGGCAATGTAATCAGTGTTCCTCCAGAGATCTACACAAAGGGCTGCGTTCTTGATGTAGACGATGGGCTGGCAGGGGCTGAGAGAATTGGTTATCCGGTTGTTATCAAGGCCTCTGAGGGTGGAGGTGGAAAGGGTATCCGCAAAGTAGAAAGTTCTGAGGATTTTCCAAGTCTCTTTAGACAGgtTCAAACAGAGGTACCTGGCTCGCCTATCTTCATCATGCAGCTGGCTCAGCATGCCAGACACCTTGAGGTTCAGATATTGGCTGATGAGTATGGAAACGCCATCTCTTTGTTTGGACGAGACTGCTCCATCCAGAGAAGGCATCAGAAGATCATAGAGGAGGCTCCTGCCACCATAGCTGCTCCCTCAACATTTGAGCAAATGGAACGGTGTGCTGTGCGACTGGCCAAGATGGTGGGCTATGTGAGTGCAGGTACTGTGGAATATCTTTACTCTGAAGATGGAAGTTTCCATTTCCTGGAGCTGAATCCTCGCCTCCAGGTGGAACATCCCTGTACAGAGATGATCGGAGATGTAAACCTGCCAGCTGCCCAGCTtcagATTGCGATGGGCATCCCCCTTTATAGAATTAAGGACATCCGCTTGTTTTATGGAGAAGCTCCGTGGGGCGACACCGTCATTAACCTAGAGACTCCAGACTGCATGCCATGTCCAAGAGGGCACGTCATAGCTGCTCGGATCACCAGTGAGAACCCTGATGAGGGGTTCAAGCCCAGTTCTGGCACAGTGCAGGAGCTGAACTTCCACAGCAGTAAAAACGTCTGGGGTTATTTCAGCGTGGGGGCAACTGGTGGCCTGCATGAATTTGCAGACTCCCAGTTTGGACACTGTTTCTCCTGGGGCGAGAATCGCGAAGAAGCCATTTCGAACATGGTGGTGGCTATGAAGGAGCTTTCCATCAGAGGTGACTTCAGGACCACGGTTGAATACCTCATTAAGTTACTAGAGACAGAAAGCTTCAGAAACAATGACATCGACACGGGCTGGCTGGATCATCTCATTGCGGAGAAAGTGCAGGCGGAGAGACCAGATACCATGCTGGGTATTGTTTGTGGGGCTTTGCATGTTGCTGATTCAAGCTTCCGAAAGAGCATGTCTGACTACCTGCATTCACTGGAAAGAGGCCAAGTACTGCCTGCAGCCAGTCTCCTCAACTCTGTCAATGTGGAATTAATATATGAAGGAGTCAAGTTCTGCCTCAAGGTGGCTCGCCAATCACCAACAACTTATGTCATCATGATGAACGGCTCCAACATTGAGATAGATGTCCACAGGCTGAATGATGGCGGCCTCCTGCTGTCCTACGTCGGCAGCAGCCACACCAGCTATATGAAGGAGGAAGTGGATAGCTACCGCGTCACTGTTGGCAACAAGACTTGTGTCTTTGAAAAAGAGAAGGATCCCACGGTGCTGAGGTCGCCCTCTGCTGGTAAACTGCTGCAGTACATGGTCGAAGATGGAGGCCACGTTAATGCAGGAGAGACCTATGCAGAGATCGAGGTGATGAAGATGGTGATGACGTTGACCTTGCAGCAGTCTGGTTGCGTCCACTTTGTCAAGAGACCTGGAGCGGTTCTGCAGCCTGGCTGCGTGGTGGCACATATAGACCTGGATGACCCCAGCAGTATACATCCAGTGGAGCTCAACACGGCCATACTGCCACCCCAACAACCACTGCCCATTGTTGGGGAAAAGCTTCACCAGGTGTTTCACTGTGTGTTGGAAAACTTGGTTAAAGTCATGGACGGCTACTGCCTTGAAGAGCCCCTCTTCAGCAGCAAGCTGAAACAGTGGGTGGCTACGCTGATGAAGACCTTAAGGGACCCCTCACTGCCGCTGTTGGAACTCCAGGAGATCATGACGAGCCTGGCGAGTCGCATTCCGTCCAGTGTGGAGAAAGATATCCGTAAAGTCATGGCACAGTACGCAAGCAACATCACCTCTGTCCTCTGCCAGTTCCCTAGCCAAAAGATTGCAAATATTCTAGACAGCCACGCAGCAACCCTACAGAGGAAGGCTGACCGAGAGGTGTTCTTCATGAACACACAGAGCATCGTTCAGCTGGTACAGAGGTACCGAAGTGGAATTCGTGGTTACATGAAGTCTGTGGTTCTCGATCTGCTGACGCGATACCTGCAAGTAGAGATGCAGTTCCAGCAAGCTCACTATGACAAGTGCGTTATCAACCTGAGAGAGCAGCACAAACCTGACATGAATCCTGTGTTGGAGTACATCTTCTCTCATGCCCAGGTCTCCAAGAAGAACATCCTAGTCACAATGCTCATAGACCAACTGTGTGGAAGGGATCCCATGCTGGCAGATGAGCTAATGGCCATTATGAACGAGCTCACACAGCTCAGCAAGATGGAGAACTCGAAGGTGGCCTTGAGAGCCAGACAGGTCTTGATTGCCTCCCATTTACCATCATACGAACTGAGGCACAACCAGGTGGAGTCCATCTTCCTGTCAGCCATTGACATGTATGGCCACCAGTTTTGTCCAGAAAACCTAAAGAAACTCATTCTCTCCGAAACCTCCATTTTTGATGTTTTGCCCACTTTCTTCTATCACTCCAATCAAGTTGTCTGCATGGCTGCCTTGGAGGTGTATGTGCGCAGAGGTTACATCGCCTATGAGCTGAATAGCATCCAGCATCACCAGCTGCAGGATGGAACTTGCGCTGTAGACTTTCAGTTTATGCTGCCATCATCCCATCCAAACAGagggagcagccctactctGAACAGGGTTCCAATGCCAGTGAGTGGATCAAGCCATTTTCAAATGAGGCGGCAGAGCAGTGAGCTCTTCCTGGAGGGAGCCTTGTCTCCACCTTGCCAGCGCATGGGCGCCATGGTGGCTTTCCAGTGTTTTGACGACTTCAAAAGGAATTTTGATGAAGTTCTCTCCAGCTTTGCGGAACCCGTCTTGGAGAGTGCCCCGTTCTCAGAGTCCTGCTCCAGTCTCTTTGAGGAGGAGAACTTCAAGAACACAAGGGAGAACCCAATCCACATCATTAACGTGTCCATAAAAACAGCCGATGCAGAAGATGACGACGCCTTGGTTACAGCCTTAACTGCTTTTGCTCAGTCAAAGAGACTTGTCCTCTTTGAATATGGAATCAGGAGAATCACATTTTTGATTGCACAGAAGCGAGAATTCCCCAAGTTCTTCACTTTCAGAGCTAGAGATGGGTTCCAGGAGGATCGTATTTACCGCAATCTGGAGCCGGCTTTAGCATTTCAGCTGGAGCTCAACCGCATGAGGAACTTTCAAATGACAGCTGTTCCCTGTGCCAACCACAAGATGCACCTGTACCTCGGTGCTGCTCGTGTTCAGGAGGGGGCTGAAGTCACAGACTACCGCTTCTTCATACGAGCTATTATCCGCCACTCAGATCTCATTACAAAGGAAGCCTCCTTTGAATACCTTCAAAATGAAGGAGAACGTCTTTTGTTGGAAGCCATGGATGAGTTGGAGGTTGCCTTCAGTAACACCAGTGTCCGCACAGACTGCAACCACATCTTCCTTAACTTCGTCCCAACTGTCATTATGGACCCCTCTAAAATAGAGGAGTCTGTTCGCTCCATGGTGATGCGCTACGGCAGCCGTCTTTGGAAGCTGCGGGTCCTGCAGGCTGAGCTGAAGATCAACATCCGTCTGACACCAACTGGGAATGCTATTCCTGTCCGCCTGTTCCTCACTAATGAGTCTGGCTATTACTTGGACATCAGCCTGTACAATGAAGTCACCAACCCCAGTTCTGGACAGaccatgtTCGAGTCATACGGAGATAAGCAGGGTCCTCTGCATGGCATGCTGATCAACACTCCGTATGTGACCAAAGACCTGCTTCAGTCCAAGCGCTTCCAGGCTCAAACTCTGGGGACTACATACGTCTATGACTTCCCTGAGATGTTCAGACAGGCACTGTTTAAGCTGTGGGGTCCAGGGGACAAGTCCCCTAAAGACGTGCTGATGTGCACCGAGCTGGTTCTGGACCATCAAGGTCTACTTGTGCAGATGAACCGCCTGCCTGGAGACAACGATGTGGGAATGGTTGCCTTCAGGATGAGGATGAAGACTCCGGAGTACCCAGAGGGCAGAGATATCATCGTCATCTGCAATGACATCACTCACATGATCGGCTCATTTGGTCCTCAAGAGGATGAGCTGTTCCTCAGGGCGTCTGAGTTGGCTCGGGCCGAGGGCATCCCCCGCATTTACGTCGCAGCAAACAGTGGAGCACGCATCGGCCTCGCGGAAGAGATCAAACACATGTTCCAGGTGGCCTGGATTGACCCCACTGACCCCTACAAGGGTTTCAAGTACCTCTACCTGACACCGCAGGACTACACACGGATCAGCTCCACCAACGCTGTTCACTGTCACCAtgtagaggaaggaggagagtcCAGGTACATCATCACTGACGTCATCGGGAAGGAAGAAGGTCTCGGGGTTGAGAACCTGCGAGGTTCTGGCACCATTGCTGGAGAATCCTCTCAGGCCTATGATGAGATTATTACAATCAGTATGGTGACGTGTCGTGCTATTGGAATCGGAGCCTATCTGGTTCGTTTGGGACAGAGAGTGATTCAGGTGGAAAACTCTCACATTATCCTGACTGGAGCAGGTGCTCTTAACAAGGTTTTGGGCAGAGAGGTCTATACTTCCAACAACCAGCTGGGAGGGATCCAGATCATGCATAATAATGGAGTCACACACACCACCGTGCCGGATGACTTTGAAGGCGTCTTCACCATCCTCCAGTGGCTCTCCTATATGCCAAAGAACAAACACTCCCCTGTGCCTGTCATATCAACTACTGATCCggtagacagagagatagaATATACTCCTACAAAAGCGCCGTACGACCCCCGCTGGATGCTGGCTGGGAGACCTCATCCCAAGGTGAGAGGTGCCTGGCAGAGTGGATTCTTCGACCACGGCTCTTTCATGGAGATCATGGAGTCTTGGGCTCAGACGGTGGTAGTGGGCCGAGCACGgtTAGGAGGAATTCCCCTTGGTGTCATTGCCGTTGAAACGCGCACAGTTGAGTTCACTGTCCCAGCAGATCCAGCAAACCTGGATTCAGAATCTAAAGTTCTGCAGCAGGCTGGCCAGGTGTGGTTTCCAGATTCCGCCTTTAAAACGGCTCAGGCGATTTGTGACTTCAACCGGGAACGTCTGCCTTTAATGGTGTTTGCCAACTGGAGGGGCTTCTCTGGTGGAATGAAAGATATGTATGACCAGGTACTGAAGTTTGGGGCCTACATTGTGGATGCCCTGCGGACTTTTCATCAGCCGGTGCTGGTGTACATCCCTCCACACGCTGAGCTGAGAGGAGGCTCATGGGTGGTGATAGACCCCACCATCAACCCACTGTGTATGGAGCTCTATGCAGACAGGGAGAGCAGAGGTGGTGTGCTGGAGGCTGAGGGTACAGTGGAGATCAAATTCAGGAGAAAGGACCTGCTAAAGACCATGAGAAGACTGGATTCAGTCTATGCTAGTTTGGTTGAGCAACTTGCTTCCCCAGAGCTGTCTGACAAACAGTCCAGAGAGCTTGAGTCAAAGCTCAAAGCCAGGGAGGAATTCCTGTTGCCCATCTACCACCAGGTGGCAGTGCAGTTCGTAGATCTCCATGACACCCCAGGGAGGATGCAGGAGAAGGGTGTCATCACTGATATTTTGGATTGGAAGAAAGTGCGGACCTTCTTCTACTGGCGTCTGCGCCGGCTCCTGTTGGAGCAGGTGGTGAAGTGTGAGATTCTGCAGGCCACCAAGGACCTCGGCGACGGACACATGCAGTCCATGCTGCGACGCTGGTTTGTTGAAACCGAAGGAACAGTCAAGGCCTACCTCTGGGATAATAACCAAGCAGTAGTTGAGTGGCTTGAGAAGCATTTGACCAAGGAGGATGGCACTCGATCCCGCATCCGAGAGAACATTGAGTACCTGAAAAGAGAAAACACTTTGAAACACATCCGCAGCCTGGTGCAGGCCAACCCTGATGTAGCCATGGACTGcatcatccacatgagccagaATATCACTCCATCCCAGAGGGCCAAGCTCTCGCATCTGCTGGCAACTATGGACAGCCCCAGCACCAGCTAAGCCAAAGGGGCCTGTTCAGCTTATATTATTGATAGGAACTAAAAACACTGTTATAGTTGATTGTACTGTATAGAGGTGAAAAGTGACTTATTTTTCAGCAACCACACAACCACTACAGCGCTCTGTCTGTTGTAAACATTGCTGTTGAGTGGCGTCTTCGCAGGGACGTCGTAATCCGTTCCACTCTTGACTGACAGGCAGAGAGTTTGTCTTACATTTGTGAGGTAAGCAGTCAGTCATTTCCGCTGCTCAACCCAGGAACTTTCTTGTTCACAAACAAGAAACTACGACTGTAACGCACATTTCACTTGGCTGTATTTGCACATAATACAGGTAGTCTGTCTGTGTTTAATTTGCCTTACTAGGCTCTTTAGTCTATTGAGGCCACAGTTATACAAGATTCCTGAAGTAGGAGTCTTCCTATTTAGGTGCTGGTTGTCATGTTCAATAGAGAATCTTTGTTAAACTTTGAATGTAGCTGAAACAACTGATCAATTATTTTGAtgaattttcaaaaataacaaaatcctATATCTGAATTGAAAAAATGTGCCGATAATTaattctgtttcatttctgtgttgactaaaaatatgatttttttttaccagtatTGTAATGCAGAAATATAGAAACAGATTAAGTATTTTCTAATAAGTATTATGGACCTCTATCTTTTCATTGTCACTTTcggtctgtttatgtgtgtctatgCTGTAGTTTTGTATGCTAAGACAATTTTATGAATGATAGGAGATACTGTGACACTGCATGTGATACTTCTGAGCTTTTCTTTAATTTTTGTTGATATATCTCCGATATAATACAGTAATTCTTAAGACTCAGGTTGGAAAATAATGGCCAAAGTGATGGCTTCATTTGCCTCACCTTTGATCAAAACATAAGCCATGACATTTCATTTGAATGTATataaacactttcctgtgtctTGTATTCTACCAAAGACTGTTTGTTAATAAATGtcattgatatata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU83911 lncRNA upstream 23936 18636726 ~ 18637221 (+) True G62667
TU83895 lncRNA upstream 43588 18617074 ~ 18617569 (+) True G62656
TU83839 lncRNA upstream 129846 18531010 ~ 18531311 (+) True G62613
TU83773 lncRNA upstream 158782 18501762 ~ 18502375 (+) True G62560
TU83772 lncRNA upstream 160651 18500125 ~ 18500506 (+) True G62559
TU83952 lncRNA downstream 52091 18737554 ~ 18742398 (+) False mvk
TU83993 lncRNA downstream 62027 18747490 ~ 18748496 (+) True G62732
TU83994 lncRNA downstream 62027 18747490 ~ 18748152 (+) False G62732
TU84005 lncRNA downstream 87292 18772755 ~ 18773108 (+) True G62741
TU84019 lncRNA downstream 179112 18864575 ~ 18864807 (+) True G62755
XM_039802345.1 mRNA upstream 18720 18637694 ~ 18642437 (+) True p2rx2
XM_039802331.1 mRNA upstream 73442 18574988 ~ 18587715 (+) True si:dkey-98f17.5
XM_039803228.1 mRNA upstream 206081 18441347 ~ 18455076 (+) True tpcn1
XM_039802175.1 mRNA upstream 223967 18432817 ~ 18437190 (+) True cfap73
XM_039802308.1 mRNA downstream 18669 18704132 ~ 18715310 (+) True myo1ha
XM_039802306.1 mRNA downstream 35271 18720734 ~ 18729940 (+) True ube3b
XM_039802310.1 mRNA downstream 44753 18730216 ~ 18736475 (+) True aldh3b2
XM_039802311.1 mRNA downstream 46438 18731901 ~ 18736475 (+) False aldh3b2
XM_039802309.1 mRNA downstream 46439 18731902 ~ 18736475 (+) False aldh3b2
TU83744 other upstream 241567 18416128 ~ 18419590 (+) False tbx5b
TU83742 other upstream 245151 18407387 ~ 18416006 (+) False tbx5b
TU83701 other upstream 329927 18330705 ~ 18331230 (+) True G62513
XR_005639579.1 other upstream 651839 17998686 ~ 18009318 (+) False cmya5
TU83072 other upstream 2127008 16533329 ~ 16534149 (+) False LOC120560897
TU84360 other downstream 749444 19434907 ~ 19448950 (+) False rasl10a
XR_005639482.1 other downstream 1792349 20477812 ~ 20488838 (+) False wdr31
XR_005639483.1 other downstream 1792349 20477812 ~ 20488838 (+) False wdr31
TU85087 other downstream 1990954 20676417 ~ 20677916 (+) True G63480
XR_005639510.1 other downstream 2903413 21588876 ~ 21598799 (+) False LOC120560787

Expression Profile