RNA id: TCONS_00074574


Basic Information

Item Value
RNA id TCONS_00074574
length 1309
lncRNA type retained_intron
GC content 0.36
exon number 5
gene id XLOC_038008
representative True

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 34902971 ~ 34915394 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGCGGATTTCGGACAGCGAAGAGGGCGAAATGGAGATATGAGGTCTGAAAAGGAGCAGAGGACAGGCAGCAGGGAGAGAGGAAGCGTCGAAATCCAGTTCAGGGACTGTCAGGACAACGCCGCTGTGAACCCCAAGCACAAGGAGGAGAAAAAGGAGATCTTCAGCAAGGTTGTCATCCGCCGACTGCCACCCAGTCTATCAAAAGACCAGCTCCAGGAGCATCTGAGTCCTCTTCCATCTTTTGACTATTTTGAGTTCTTTCCTGCTGATCAGAGCTTATACCCTCATCTCTTCTCAAGAGCATACATAAACTTCAAAAACCCAGAGGATATCATAATATTCAGAGATCGCTTTGATGGCTATGTATTTATTGACAATAAAGGTCAAGAATATCCAGCTGTTGTAGAATTTGCCCCATTTCAGAAGGTTTCCAAGAAAAAGCTAAAGAAGAAAGATGCGAAAGCTGGGACCATTGAAGAAGGCATCTTAAAAAAGAtttcttaatatttataattttgaagTATTCAAGAATTGACGTCATTGTGTAAattacagttgatgtcagaattaacaacccccttcaaatttttttcttctttttgaaatattttccaaattatgtttaacagagcaagggagttttctcagtatgtctgataatattttttcttctggaaaaagtttttttttatttagtctagaataaaagcagtttgaatttttttaaacaccattttagggacaaaattattagcccttttaagctattttttttcttgaaaatctacagaacaaagcattgttatacaataacttgcctaattaccctaactcacCTAGTtaccccaattaacctagttaaacctttaaatgtccctttaaactgtatagaagtgtcttgaaaaatatctagtaaaatattatttactgtcatcatggcaaagataaaataaatccattattagaaatgagttattaaaactattatgtttagaaatgtgttaaagaaatctgctctccattaaatagaaattggggaaaaaaataaacaagcggtctaataattcaggggggctaataattctgacttcaactgtatatactgcaatatattaattaatttgttaaacaCTGTTTTCAGACCCAGAATACAGGCGATTTCTGGAAAACTACTCTTGTGATGAGGAGAAATCGATGGCCAACCCAGAAACGCTTTTGGGAGAGATTGAAGCTAAAACCCGAGAGCTCATAGCCAAAAGGACGACACCCTTGCTGGAATACATCAAAAACAAGAAATTAGAGAAACAG

Function

GO:

id name namespace
GO:0045727 positive regulation of translation biological_process
GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay biological_process
GO:0051028 mRNA transport biological_process
GO:0005634 nucleus cellular_component
GO:0005730 nucleolus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005515 protein binding molecular_function
GO:0042162 telomeric DNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060721-2 Predicted to enable telomeric DNA binding activity. Predicted to be involved in positive regulation of translation. Predicted to act upstream of or within mRNA transport and nuclear-transcribed mRNA catabolic process, nonsense-mediated decay. Part of protein-containing complex. Orthologous to human UPF3A (UPF3A regulator of nonsense mediated mRNA decay).

Ensembl:

ensembl_id ENSDART00000129936

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00074570 lncRNA downstream 31563 34874903 ~ 34877372 (-) True XLOC_038006
TCONS_00074563 lncRNA downstream 96052 34701942 ~ 34812883 (-) False XLOC_038001
TCONS_00074565 lncRNA downstream 96052 34773621 ~ 34812883 (-) True XLOC_038001
TCONS_00075416 lncRNA downstream 96053 34628721 ~ 34812882 (-) False XLOC_038001
TCONS_00075419 lncRNA upstream 238667 35154055 ~ 35160615 (-) False XLOC_038013
TCONS_00075004 lncRNA upstream 239442 35154830 ~ 35161005 (-) True XLOC_038013
TCONS_00074592 lncRNA upstream 716905 35632293 ~ 35633657 (-) True XLOC_038015
TCONS_00075420 lncRNA upstream 765580 35680968 ~ 35832754 (-) True XLOC_038016
TCONS_00075005 lncRNA upstream 1075276 35990664 ~ 35995392 (-) True XLOC_038019
TCONS_00074571 mRNA downstream 23033 34884933 ~ 34885902 (-) True XLOC_038007
TCONS_00074569 mRNA downstream 26419 34872733 ~ 34882516 (-) False XLOC_038006
TCONS_00074568 mRNA downstream 37035 34866576 ~ 34871900 (-) True XLOC_038005
TCONS_00074566 mRNA downstream 66521 34836068 ~ 34842414 (-) True XLOC_038003
TCONS_00074560 mRNA downstream 398938 34485048 ~ 34509997 (-) False XLOC_037999
TCONS_00074575 mRNA upstream 4613 34920001 ~ 34937256 (-) False XLOC_038009
TCONS_00074576 mRNA upstream 16490 34931878 ~ 34937025 (-) True XLOC_038009
TCONS_00074577 mRNA upstream 22928 34938316 ~ 34945582 (-) False XLOC_038010
TCONS_00074578 mRNA upstream 23929 34939317 ~ 34944604 (-) False XLOC_038010
TCONS_00074579 mRNA upstream 23935 34939323 ~ 34945566 (-) False XLOC_038010
TCONS_00074567 other downstream 57131 34848860 ~ 34851804 (-) True XLOC_038004
TCONS_00074564 other downstream 155776 34753044 ~ 34753159 (-) True XLOC_038002
TCONS_00074544 other downstream 987364 33921464 ~ 33921571 (-) False XLOC_037985
TCONS_00074543 other downstream 987911 33920932 ~ 33921024 (-) True XLOC_037984
TCONS_00074537 other downstream 1124428 33783555 ~ 33784507 (-) False XLOC_037982
TCONS_00074593 other upstream 786267 35701655 ~ 35701772 (-) True XLOC_038017
TCONS_00074595 other upstream 1203572 36118960 ~ 36120526 (-) True XLOC_038020
TCONS_00074596 other upstream 1845501 36760889 ~ 36761294 (-) True XLOC_038023
TCONS_00074597 other upstream 1850235 36765623 ~ 36766028 (-) True XLOC_038024
TCONS_00074598 other upstream 1854969 36770357 ~ 36770663 (-) True XLOC_038025

Expression Profile

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