RNA id: XM_039802900.1


Basic Information

Item Value
RNA id XM_039802900.1
length 3415
RNA type mRNA
GC content 0.48
exon number 21
gene id susd1
representative False

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 7600092 ~ 7623715 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGTCTAACTGAATATGTCAGGGAATGACAGATTAAGCCACAAAACCCACCAGCTGCAAGAAGACGATTGAGAAAAGGAGCTGTATCTCAGAGTGACCTCAGCTCACCCACTCACCGCGTCCTCTCAATCCTGGTTATCAAATCCACTCAGTGTCATCATTTTCCACAAGGCggaagtaaaaaaaatggaaaaaaaagagagaagaagatgGGGATGAGGAGGTTAAGTGTCTGGTGAAgtaaagagagagtgagaggaagaCGCTCAGACAGGATGGCGGAGAGAAACAGAGCAATGATCATGTTTTTTCTGCTCTGTGTCATTGCAGTAGCAGCAGAAGGCTACACTCTGGACGTGTGTGCCTCCTGCCACGCTAACGCCACATGTGACGACAAGTCAGACGGCTCTGGCAAAGTTTGTAACTGCAAGTACGGGTTTGTTGGAAATGGGAGAACCTTCTGTCAAGATAAAGATGAGTGTCAGATAGGAGCCAGTAAGATCTGTGGGCAACACACCACCTGCCACAACACATATGGCAGCTACTACTGTACCTGCCTGGCTGGCTACAGCCCTTCTAACAACATGGCCATCTTCATCCCGAATGATGGAACCCACTGCCAGGACATTGATGAGTGCAGGATCACAGGCCTGTGCGGAGAGGGAGGTCAGTGCAGGAATCTTGAGGGCAGTTTTGACTGCAGCTGCCAGCTGGGATATCAAGTCCACAACGGAGCGGAGCCCTTCCATCCTCACAGAGACAAAGCTTCCTGCAAAGTGGTTGACTGTGGCTCGCCTGCCTCAGTGGAAGACACAGTGCTGCTGTCATTCACAGGGACCACATACAGCAGTGTGGCCATGTTTGTCTGTGACAAAGGCTttgtgtggaggaggggagaCAACCACTCtatgtgtggagctgatggacTGTGGAGAGGACCCACCATGGTCTGTGAAgAGGTTGACTGTGGCCCTCCCCCTACCCTCCCTCACTCTCACATGCTGTGGAATAAGAGGTCAAGCATGGGCACCGAGGTGCTTTATCAGTGTAACTCTGGATATCATAATGTTGGAAAGGGCAATGTATCCATCTGTACTGCTGCCGGACAGTGGGAGAGGCCGTCCGTGCTCTGTCAAGAGACCTTGTGTGGAAGTCCCCCTATAATTGAATCCACTGAGCAGGTGTGGGACAATAATTCAACTCCTGGCAGCACTGTGCTCTATGTTTGTAAAGAAGGCTTTTATAAGCAAGGAGGAGATAATGTATCAATCTGTAATGAAAACGCTCAGTGGACCCTCCCAACTCTGTTGTGCCAAGAGATATTATGTGGGGATCCTCCTATACTGCCCCATACTGGGCAAGTGTGGAATGGCAGCTCCACCCCTGGAAGCACAGTGACCTACTACTGTAAAATAGGATTTTATCACAATGAAGGAAATAACATATCATTGTGCACAGTTAATGGTTACTGGACAAAACCAAACATCTCCTGCAAAGAGGTTCACTGTGGTGTGCCCCAACCCATCCCACATTCAATCATGCTGTGGGATAAAATCTCCACTGTGGGCTCTCAGGTTGTTTATCAGTGTAACTCTGGATATCGCAGTGTTGGAGAAGGAAATGTATCAGTTTGTACTGCCAGTGGAGAATGGGATGAAGCCTCTCTGCTCTGTCAAGAAATCAATTGTCAAGAACCTGTTTTTAAACCTCATGCTAAAATGCTTTGGGACGGCACATCACACATTGGCAGTGTGGTGTATTACCAATGTGAGGAAGGATATGACACCAGGAGCCTGAGAAACTACTCAGTATGTGAAGAGAATGGACTGTGGGAGGATATTGATCTATGGTGTGAAGAAATAAGCTGTGGCCCCCCACTAACCCTCCCCGATACTAACCTCCTGTGGGATCGCACCAGTAGACCGGGCAGTGTGGTGCTGTATGAGTGCGTGGATGGATTTTACCAGGAGAGTGGAAATAATATTTCAACATGTTTACTATCAGGACAGTGGGGGGAAGTATCTGTAAAGTGCAAAGCCAAATGTGGTCCGGTTCCCCTCCTTGCCAAATCCGAGGTGGTGTGGCATAACAGGAGTGTTGTGATCCACCGCTGTGTGGATGGATATCACAGCTGGAGAGGCAGCAACGTCTCTGTGTGCAGCAGCTCTGGGGTGTGGCAGAGAGCTACACTGAGATGCATAGCCAAATGTGGTCCGGTTCCCCTTCTTGCCAAATCCGAGGTGGTGTGGCATAACAGGAGTGTTGTGATCCACCGCTGTGTGGATGGATATCACAGCTGGAGAGGCAGCAACGTCTCTGTGTGCGGCAGCTCTGGGGTGTGGCAGAGAGCTACACTGAGATGCATAGCCAAATGTGGTCCGGTTCCCCGCCTTGCCAAATCCGAGGTGGTATGGCATAACAGGAGTGTTGTGATCCACCGCTGTGCGGATGGATATCACAGCTGGAGAGGCAGCAACGTCTCCGTGTGCAGCAGCTCTGGGTTGTGGCAGAGAGCTACACTGAGATGCATAGAAATCAAGCCAGCTGTCAATCACTTATTTGTCCTCAATGAAAAATGTCTGCACTGGAGAGCAGAGAAGTATGAGGAGGATACAGAAATATACAAGGTGACATACATAGGATCCAGAGACTACCAGAGGTCCTTTCATGACAGAAGGAAGCAGGTTCTGAGCTCTAAGGCTGAACAGCTGGAACTCTGTCTGAACCTGCTTCCAGTCACAAACTACAGCATCTCCATCACTGCGGTGTCTTCCAGATTCACAGCCACCATCACCACTAACACCAGTTTGCCAGTGCCCACAGCACCAGTTGTCCACTACAGAGAATTTACGACTCCTATACCAACTTTGAGGCTACGCAGATCACCCAACACACTGGACCCAATAAGTTTGTACCAGGTGTTTGTGCTTCCTGTAGAGGGGATTATGATGTTTGACTGTTCCTCTCCTGCGAGCTCAGACCCCTCAGGCAAAATAAAGTCCTCCACAGAGTACATCACTGCCCAGATAGATGTCACACATGTCGGCACAGAGATGAACTTTACTGTCGGGGATGGACTCTACTATGGAGGCTTCTTTAATGCACCACTGGAGAATGGCAGGAACTATTACATCACCTTACGAGCCGTCAGTCAGTGGAAATCGgCTTTAAAAAGTTCCTGTGTCCTGTGGGCTAAAGTAAGAGGTACATCCTATGTTCTGATGGTTTCATCTCTGtctgctgctgcaacaataggACTGGTTGGCTTCATCATTTTGGTTGGATACAGTTTCACCTGGTTTTTCAAGAGGAAATGACACTGCTGATGTTCTGTTTATTTGTCAGTATGACAAATTTAATGCAGTCTTGGCTTCCTATCAGTACATTTTGTTTCTTACATTTtgtaaataattataa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU80351 lncRNA upstream 11466 7587795 ~ 7588630 (+) True G59833
TU80345 lncRNA upstream 23969 7574730 ~ 7576127 (+) False LOC120560567
TU80344 lncRNA upstream 24012 7574730 ~ 7576084 (+) False LOC120560567
TU80312 lncRNA upstream 96082 7498489 ~ 7504014 (+) True G59804
TU80343 lncRNA downstream 6812 7630506 ~ 7631241 (+) True G59826
TU80363 lncRNA downstream 11901 7635595 ~ 7636054 (+) True G59837
TU80365 lncRNA downstream 23011 7646705 ~ 7647149 (+) True G59839
TU80492 lncRNA downstream 251120 7874814 ~ 7878371 (+) False atp2a2a
TU80491 lncRNA downstream 253474 7877168 ~ 7878371 (+) False atp2a2a
XM_039803203.1 mRNA upstream 2882 7576235 ~ 7597214 (+) True si:ch211-12e13.1
XM_039803204.1 mRNA upstream 2882 7576235 ~ 7597214 (+) False si:ch211-12e13.1
XM_039803205.1 mRNA upstream 2882 7576235 ~ 7597214 (+) False si:ch211-12e13.1
XM_039803207.1 mRNA upstream 14373 7576235 ~ 7585723 (+) False si:ch211-12e13.1
XM_039803206.1 mRNA upstream 17561 7576235 ~ 7582535 (+) False si:ch211-12e13.1
XM_039802906.1 mRNA downstream 2042 7625736 ~ 7630180 (+) False zbtb26
XM_039802904.1 mRNA downstream 3476 7627170 ~ 7630180 (+) True zbtb26
XM_039802907.1 mRNA downstream 8998 7632692 ~ 7639409 (+) True LOC120560421
XM_039802908.1 mRNA downstream 8998 7632692 ~ 7639409 (+) False LOC120560421
XM_039802909.1 mRNA downstream 8998 7632692 ~ 7639130 (+) False LOC120560421
TU80145 other upstream 623294 6969133 ~ 6976802 (+) False add2
TU79987 other upstream 922612 6674917 ~ 6677484 (+) False kat6a
TU79733 other upstream 2102342 5495155 ~ 5497754 (+) True G59347
TU79728 other upstream 2146602 5448136 ~ 5453494 (+) False golga3
TU80342 other downstream 2113 7625807 ~ 7629074 (+) False zbtb26
XR_005639603.1 other downstream 60951 7684645 ~ 7684763 (+) True LOC120561481
XR_005639604.1 other downstream 66980 7690674 ~ 7690792 (+) True LOC120561492
XR_005639610.1 other downstream 69397 7693091 ~ 7693209 (+) True LOC120561498
XR_005639608.1 other downstream 74233 7697927 ~ 7698045 (+) True LOC120561496

Expression Profile