RNA id: XM_039802938.1


Basic Information

Item Value
RNA id XM_039802938.1
length 2744
RNA type mRNA
GC content 0.56
exon number 12
gene id ccser1
representative False

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 21991353 ~ 22121315 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCGGAAGAGACGAATGAGGAAACTAGACTCCACGTCACTGAGGTGTAATCATATCGGCGTCAGTGCAACACAAGGTGCTACCTCAGTACGATTTCAGAACCACTGTACACTTCCAGCTGTCCTCACATAGGACCGGATAACTCGTATGACCGCAAAGCGAAGATatagtcagctgtttgtgcatAGAGCGGCGTCGGTAGAGACACTGGGAATCCGCTGAAGAGTGCCCCGCTGCCTTAGCTTCTAGATGGGGGAATCCGGCTCACGCCGCTCTACACTTGTTTCCCGCCTGCCAATCTTCCGCCGCAGCAGCAGTAAGAGGCAGGAgtctcttccctcctctccgTCTTCGGGGGGGCAGGGCAATGGCGTCCACACCTCTTCGCCCTCCAGCACCAACTCCAGTTCTGGCAGTACCGGGAAACGTCGGAGCCTTTTCAGAACTCCATCTCTCAATTTCTCAGCTAAACGGAATAGTGTTCCTCGTGTCCAGCCTATCAACCTAAACCTCACCCCCCCGCTGACACAGAGCACTGACACAAACGGAAATAACCAGCAGGCGATAACAACGTCATTGTCAACAGGGTTCAGTGAAGGCGGTGGACGCCCCAAGTCACGCCACTCGTTTGGGTTTGGCAGCCACAAGCAAAAGAAAATCCCACGCTCTCAGACCGAGGATTTTGAGAAagtgtcctcctcctcctcctccacagccaaTCGAAACGTATTCATTAACTGCATCAGTGGCTCAGGGGCCAATGAGGGTGACGACTCTGGGTTCCTCGATGACTACAGCGGTGGCAGTAATAACAAACGGTCGTCGCGGAAGAAACAGCTGCTGCCCAAATCGTTCTCAGCTCACCACCGCTTCTCCCGGACCTCCGATCACCACAGACCTCCAGAAGTGAATCTGGAACCGCCGAGCTCCACCACCATCGCTCCAGGGGCAGGTGGGCTCACCCCGGGGTCGTGGCCAGGGGAGCTGCTTTGCGCTGGAGGGGAGAGCTCACTCCAGTCCCCGATGATATCAGAGGACCGAACCACAGCCATCACCCCTTCAGAGTTCATCCCCATCACGGAGGATTCTGTGTCCGAGGTGGATGCTCTGCCAGCTCCCAGCCCCGGATCTGGTCTAGCCCCAGAATCTGCCTCTGTGCCTGGGCCGGCTGTTGACACGGCTCCACCTGAACCCCCACCTGCTCCAGAGAACTTCAGCGTGGCTGTCTCTAACTCCCAGTCCTCTTCTCAGGTTTTCTTCACTCCAGCCCAGTCCAGCGCTGAAAAACCTTTACTCCCTGAAACCAGCACAGCAAACAACACAGACTATGAGACCGCCATTTCCCTCTCAGAGCCTGAGACAGCAGTTCCCTGCCTACCCCTGCAGGAACAATCACtggaagagaggaaggagaggttGGAGGAGAGACAGGAAGCGAGGGATGAGTTGTCAGCAGAGGAGAAGGAGTtggtggaggagaggaaggcAGGTTACCACACAGAGACCACAAGTGAGAGTGAGGCATGTGTGGTACGCAGCGAGGGTTGTCACTCCAACCCAGAGCAATCGGAAAGAAGGGCAAGAAACATACGCTCTATTCAAGAAAGAGGAAGTTTCTGTGGCTGCCACGAACCAAGGTCCTCTCACTTGAGGAAACCACATGCAGCCTCTCTGTGTAGCAGCGTCAGCCCCTATCATGAGGTGATGCGGATGGAAAGGCGTCTTCGCTCCTCATCTGAGGGGGCTGGTGGGCCTCGTATCCATGGAAACCACAGAGATGCCCCAGGCATGGAGGGATGTGGTCTGctcaaacacagaaacaacTCCTCGTCATCCAAACTGGGAAGTCTGGATGTTTTAAACAACCTGGGTTCATCAGAGCTGGATGAAGATGATCTTATGTTAGACCTGGACCTTTCTGATGATCAACGACATCGACatgTGTCCAGAGAAGACTCCAGCCAGTCCCTGGCTTCCTGTCTCAACCTGCTCCCCTCACCCATTGACCAATCAGGAGATCGCATCCCAGGGAGGGAAAACAATCAGAGGGAGCCCAGCCGTCCGACCAGCCTGCTGCCTGCTGACTGGAGCTCGGTGCTGGGTTTGGGGAGGGAAGATGAGCCCTTACCTCCAGGGCTGGAGACCCTTCCATTTCGACTGATGCAGCAGGACTGCACTGCTGTCAAAACCCTGCTTTTAAGACTGAGACGAACACTGCAGGAGAGCACAGAGACAAGTCCTGCCAGCAGCCTCCAGTCTCTACCCATTAGCCCCTGCAGTGAAAAGTCCCTTCCATTTAAGGATCCTGGCAGAGAGGAGGCCTTGTTGCAACAACTGAGAGAGAAAGACGAACAGATTCTCAGACTCCACAGTGAACTGGAGAGTGCCAAAGCTGCCCTGAAGATGAAAGACTGCCAAATGACTGACCGcacaacacagacagaacacacgGGGCCAGAGGGCATCAAGGCGCATGGGAGCGTCACTTTGTCGTCAAGGAGACAACTGAaCCAGTCATCCAGGCCGGTGGTCAGGActaggcagcagcagcagcagcctggcTTCAAGGGACCGAAGGGTAGTGCGGGGTCTGGGGGCAGCACTCGGAGGGGACCTCTGTAACCAGCACCTCCCCCACCACTATCCACCTCTGCACGGCCGCCCTCCTGCTTCTGAACGACACACTGCCAGGGAGGAGCGCTACTGCCAGGGGGTCTTGGCACAGTCCACAGCCCGTAGCCCTGCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU85374 lncRNA upstream 115666 21875445 ~ 21875687 (+) True G63715
TU85373 lncRNA upstream 146215 21844832 ~ 21845138 (+) True G63714
XR_005639467.1 lncRNA upstream 370642 21608823 ~ 21620711 (+) True LOC120560273
TU85279 lncRNA upstream 372751 21616223 ~ 21618602 (+) True G63641
TU85261 lncRNA upstream 504315 21486769 ~ 21487038 (+) True G63628
TU85491 lncRNA downstream 15345 22131884 ~ 22150124 (+) True G63792
TU85584 lncRNA downstream 787496 22904035 ~ 22905966 (+) True G63872
TU85631 lncRNA downstream 870642 22987181 ~ 22988040 (+) True G63914
XR_005639470.1 lncRNA downstream 1103311 23219850 ~ 23245368 (+) True LOC120560300
TU85721 lncRNA downstream 1158381 23274920 ~ 23281109 (+) True G63976
XM_039803375.1 mRNA upstream 1771 21955578 ~ 21989582 (+) True trim36
XM_039803376.1 mRNA upstream 1771 21955578 ~ 21989582 (+) False trim36
XM_039803378.1 mRNA upstream 1771 21955579 ~ 21989582 (+) False trim36
XM_039803379.1 mRNA upstream 1771 21955579 ~ 21989582 (+) False trim36
XM_039803380.1 mRNA upstream 1771 21955580 ~ 21989582 (+) False trim36
XM_039803350.1 mRNA downstream 6496 22123035 ~ 22754750 (+) True grid2
XM_039803353.1 mRNA downstream 6496 22123035 ~ 22752013 (+) False grid2
XM_039803352.1 mRNA downstream 6496 22123035 ~ 22751796 (+) False grid2
XM_039803354.1 mRNA downstream 70929 22187468 ~ 22752013 (+) False grid2
XM_039803351.1 mRNA downstream 74519 22191058 ~ 22752013 (+) False grid2
XR_005639510.1 other upstream 392554 21588876 ~ 21598799 (+) False LOC120560787
TU85087 other upstream 1313437 20676417 ~ 20677916 (+) True G63480
XR_005639482.1 other upstream 1502515 20477812 ~ 20488838 (+) False wdr31
XR_005639483.1 other upstream 1502515 20477812 ~ 20488838 (+) False wdr31
TU84360 other upstream 2542403 19434907 ~ 19448950 (+) False rasl10a
TU85622 other downstream 813360 22929899 ~ 22930205 (+) True G63905
TU85875 other downstream 1576123 23692662 ~ 23693291 (+) True G64108
XR_005639471.1 other downstream 2707179 24823718 ~ 24834631 (+) False cdc14b
XR_005639472.1 other downstream 2707180 24823719 ~ 24834620 (+) False cdc14b
TU86491 other downstream 3568433 25684972 ~ 25696570 (+) False LOC120561182

Expression Profile