RNA id: XM_039802953.1


Basic Information

Item Value
RNA id XM_039802953.1
length 5247
RNA type mRNA
GC content 0.46
exon number 31
gene id si:ch211-102c2.8
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 19518176 ~ 19532323 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ACCAGAAGCTCCTGTCAATCAAGCACCGCAGCTCAGCACGGAAGAGTCAAGTTCAGCATCGAAGTCTCCGCGTTTAAACCCTGAAATCAGCCTTAACCAGTGGACACTGAGGATTTTGTGTCTGTATGGTACTGCTGAGTGGATACTGGATACTTGTCTTCAGCAACAGGCAATGGCTGACAGAGGCCATGGCAGAGCAGACAAAGATGAGCTTCTTTACCCAGATCTTCACAGCAGTGTGTCTGGACTGGACTCTCCTCCTCTCAAACTGGACCACTGTGACCTTCTCCTAGATGCTATTGATGCTCAGCTTGGTCAGCTGCAGGTCCAGCCCCAGAAACATCAGGCAATTTCTAGAGAGCATGATTGCAGTGATGCAGCTCCTCTCAACTGGAGTCAATCTCTGAGCAAAGACACAGGGCTTGGGAGTACTACTCAAACAAATGACATTCCTATTTCTTGTCTTGATTTGATAAACACTCTGACAATGGAGCAAACATCagAGAGTAGCACAGGTTGCCAGGACGGTCCCATTACTCATGAGGAAAATAAACTGAAATTGGACAGAAGGACAAGAGACAAAGAGGAAATAGAGACTCAGAGGGAGCAGGTGATGTGGAGGCTCCAGAGGCTGCTTGGAGAAACCTGTAACGAGGGAAGCATGACAGGAGTAACCCACCCTCCTTCAGACAGCATCTGCACTGAGGACTTTGTCCGATGCTTCAGAGATGAAATGGTTGAATTGGCATTGCCAGTGAATAATGTGCAGCAACTTGACAAAGAGGAAGAGGCTGAGAGGACAGAGATACTTGACTGTGACACTTGCCAGAGTGAACAAAAAGGACACTGTATTCTTAATGTCGACAGAAGAGGAACAGCAATGACTGGGGAAAgcaacaaagacacagagacggCTCACTATTGTCAAAGAAAGGAACTGGAGAAATGTCTTTATGACGGCTATGGAGTTAATACATCATGTAGTGAGCAAGCAGGAGCTGGAGAGACATACAACACACCACAGAGGCTTGGTGATGATGGCAGTAGCAtcCACAGAACAGAGATTGTAACAGAACATGAAACCCTGTGGCAGAACAGCCGTTCTCCTAAGACCAGGAGCTTGGCAGGAGTACCTGTGTGGAGTTTTGACACCGTGTCCATTGACAGTGACCTTGACTCAGTCTGCACAGAGCAAGTCAGGCAGCATATTCACAGGCAAACAGGATGGcgctctctcactctgtctgtcaCGGGCATGGATGACTACTGTACCAACCAGAGTGACAacgacacacccacacaggaaGAAAGTGAACCTCAATCTACATCAGGCCAAAGATCCTCTTATGGAAATGTACATAACAGAAGTCCTTCTGTCAGTAAAGCACAGCGCAACAAGAGAGAAACTTACAGACTTGTGTGTTCTTTGGAGGAAAATGACAATGACACAGATGAGGAAATGAATCACTGGCCTGAGAGGACATCAGATAAGATGCACTCTGATTGGGCGAAGATGAAAGAGCGGCTCTCTACACTCCGACAAaaatgtgaaaaggaGGAGCAGACACTACAGAACAAGAAGACTCAGTTAAAAGATGTTGAGCTCTGCCTCTCTGAACTTCAACACAGAAGAAAGCATGCCTTGCAGGAATTAGAGCAACTGACTGTAGAGACAGCAAagatggagaaggagaggaggactCTGGAGTTTGTTCTGAGAGACAGAAGGGCAGGGAAAGACTCTAGTTGCCAGCTGCATGAGCTGCAGAGGCAGAGAGCGTCCTGTATCCTCGAGATGAGAGACATGAAAGAAGAACTCGCAACTCTGAGTCAAAGTAAACAGACTCTTAAGGATTCGGCCTTCACGGAGAGGCCCAGTGTCGTCATGTCAGTgctggagagagaggagatggaAAGACAGCTGGATAATGCcaaaacagaactgtttgcTGAACAGCGACGTGCAAGAGAGAAGCAAGAGTCCATGCAAGAAAAGTTGGAGGAGACTCGTGAGGAGCTCCAGAGGGtcacagaggcagagagtgtaCTGAGGAACAGCTGTACTTGTCTGGAGGAGAAACAGAGGCAGAAAAAGGATCACATCGAGGCGGTAGAGTTTCAAGTAAGCGAGCTGCAGGGTGAACTGGGAGAATGCAAGATCAGAGTGGGCACTCAGGAGAAGATGTTGGCTCAGAAGGAGCTGCAGCTACTAGATTTACAGGAGCAACGTGGGGCCTTACAAGCAGAAAGTGATAGAGTGAAGAGGGAGCTACAACACCTGAAAACCCAGCACCGCAATGCACGGAAAGAGGACCATGAGCAAGCTCATAGAATGATGgagGCAGCATTAAAGCAGCAAAAGAAAGAATTGGCATTGGCTCATGAGCAGCAAATCCAAAAGGTTAATAAACAGACTAAAGAGGAAAAGGCAAACGCTTTGAAAGAACAAGCTCTGTCTCTCACACGACACATTGAGGCCTTGAAAAGTTCCATTCAGCTAAAAGAAGAAGAGGCAAAGAAGCTGAGGGATTCTCTGGAGCAGCAGAAGCAGGAGGCAAAGAACCGTGAAGAAGAGCTGCATGTAGAAGCTTTGGAAAAGGTGCACAAAGCaatagaggaggagaggaggaagtgggaGGCAGAAAAAGTGGAAGCAGTGCAGGTGCACTGTGGGATACTGGAAGAGCAGAATAGAAAGAGGCTGAAAAGCATGAGGAGTGAGATGCAGCGAGAGAAGAGTAAAGCACTGGCTCTTCAACATAAAATGATGGAACTAAAAACTAGAGTACAGGAGATGGAGAGTGAAAGCTGTGCAcagcagagagagcaggagTCTTTGCTGGCTGTTATTTGCAAATCACTGAAAGAGGAGCATCAGGAGAGTCAGAGGGCAGCGCTGCGGCTCGAGGAGGCTGCTCAGCTGGCAGAGAAAGAGGCTGACAGGCTCCGGGTGATGCTtgaagaaagggagaggagcCATAACCAAATCACAGCTGAACTGGACCAGCAGCTCAGGCTCTGGGCCAAGGAGCTGGGAGCAGAGTGCCAGCATCTACACCTCTTAGTGGAGCAGAGTGGAGCCAAACAAAGTTCTGTGCACCTAACTCCCAGTCCTACAGCAGCGGAGGCTCTAACAAACCTGAGAACACTAAGAGAGCAGTTGAAGCAATTGATAAACCATCTACAACAGGAGCTTGATTCACAGAAACAAACCACTGCGCAGCTGAGAAAAGACAAGgAGTGCGAATTGAGCATCcagaggcaacagctgaggatGAACAGAGACCAAGCCTTGGATTCTCTAAAGGAGCGTCTCATTCAGGAGCACATTGAGGAGTTAAGCAGTCTGAACTGGCCTCATATGTGTGATGGAGGGGCTGAGGGAGGAGGAGTGGCAGCATCACTTCGCAAACAGCTGAAGGCCAAAGACCTGGAACTCAGGCAGGTTCAGAGGAGCATGGGTCAGTGGAAGGAACAGACTGCAGCTCGTCTGGCAtgcaagtttgaagaagagtTGACAGCGGAACTAGAAAGGTGCAAGACAAAGTTGTTAAGGTGCAGAATACCATCAAAGACTCGAGAGGAGAGTCAGAGAAAGTGTGAGAGGCCTGAAGGACAGATGATGTTTAGTGCAAAGGAAGCTCAGAATTCGGTttgctctccctccctccatgtTGTGGCCTCTGCTGCCTCCCACAGCCCCTCAGACGTGGCTTCATTTAAGCTTCTACGTTACCTCCAGAGCAGAGTCAAGCAGCTCCGTGTAGAAAACCAGGCCTACACCCAGAGCCCATCGCCTTCAAACACAATCCCTTTAGATTTGGCAGGATCCTATCTTACAACAAAGCACCACAAGAAACAAGACACATCATCCCAAACTAGCTGCTTGTCCTCGATCACTCAAGGTCAAGCCGTTCCTGGGATTCAGAGTCACTCATCCATCAGGACAGTCTCAAGTTAAGGACATGAAACCTATGTGTGTTGCAAACACCAGTGATATAATGGAATGCATTTCAAGCTATTTCCTGTGGCCAGAGAAATGAATCATTTACGGTTACATGTACTTAAGACTGCAGGTTAACGAGCAGGTCACAGTGACAAATTACACAACCCAAGATTTGGTCATTAAGTTCCCATTTTTCTGTGTTAAGGAAGTTCAGTTTTATGGCTTCAGGTTACAGTAAACTCTGAATAAGCGATGAGCTGACATTTCACCAAAGATCATGTGAGTTATGTCAGAGAACCTCATAAAGCTGACAGGTCTTTATGGGAACCCTTTGTATGATCATAAATGTTACAAGATGTTAAATTGTacacaaaaacagttttgtaGATTGCTGGCAAGTTCAAACAAAATGATGTCGTCAGCATTTAATATAAtgacttaaccctcctgttatcctCAAATTTACTAACATCTGTTATCCTTGGGGTGAATTTGACCTCCAGAAAatgttggtaattaaaaaacTTTTACCAAATATTTATGTTGATAGCCTAAACTGGCAACTAGAAAATGTTGAATGTTATCTTCCCTCCCTCACAGAGgatgggtgcgtgtgtgtgtggggtgggggtagGGGAATTGAAGATTGTGAAATTGCAACAACCTGCATGTGAAAGTGACCTCAATAACAGCCAAAACAATCTCAGcaaatttgtgtaaaatgttcatATTTTCTATGTATTTTACAGCTAAAACAGcctggggtcaaattgaccccaaggaACACCGATGtgtacaaaatgcatacagaacATTGAAAATATATCATCATGTTAATTTTATGTTTACCCAGTTGTCCCCATTAAATTAGGAAAAGTCATTCaatatgaagcaaaaaaaaatgatgtcaaGCACTTTTTTAGAGATGTTAAACATTGaatggggtcaaattgaccccaaggataacaggagggttaattaactttgttttgtttcatcttAATGTAAAATAATCCGCTGGGACTGACTTCACATATTTTAAGGATGGTTTCCCTATAATCACTTCTGCTATCACACATGCAATCTGTTATTTTCAATTTGTTAGCCATGCTCCGGTTTTACAAGGCGTTTCAGCAGGCTGGAGTAGTTGTGTTGTTGGTTCTCCCTCTGAgatcaaaaatgtttaaaaaggagAATGTAGGACCAGCGCCTATTTATAAAACTACTATTTGCCAAAACATAATTGTCAGCATAAGTCTTGTTATCAGAGCTGGCCCCAACTGAACTGATCAATAAAAATC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005639511.1 lncRNA upstream 364592 19151533 ~ 19153584 (+) True LOC120560789
TU84161 lncRNA upstream 431314 19084934 ~ 19086862 (+) True G62836
TU84159 lncRNA upstream 431314 19085914 ~ 19086862 (+) False G62836
TU84163 lncRNA upstream 436522 19081080 ~ 19081654 (+) False tmem119a
TU84099 lncRNA upstream 535553 18966083 ~ 18982623 (+) True G62796
TU84387 lncRNA downstream 17087 19549410 ~ 19554906 (+) True G63005
TU84391 lncRNA downstream 23060 19555383 ~ 19562350 (+) True G63007
TU84393 lncRNA downstream 23060 19555383 ~ 19562350 (+) False G63007
TU84401 lncRNA downstream 43238 19575561 ~ 19581840 (+) False G63015
TU84402 lncRNA downstream 43238 19575561 ~ 19633642 (+) True G63015
XM_039803078.1 mRNA upstream 13632 19454248 ~ 19504544 (+) False osbp2b
XM_039803072.1 mRNA upstream 13632 19454310 ~ 19504544 (+) True osbp2b
XM_039803074.1 mRNA upstream 13632 19454427 ~ 19504544 (+) False osbp2b
XM_039803073.1 mRNA upstream 13632 19454429 ~ 19504544 (+) False osbp2b
XM_039803075.1 mRNA upstream 13632 19454432 ~ 19504544 (+) False osbp2b
XM_039802955.1 mRNA downstream 3979 19536302 ~ 19540034 (+) True tcn2
XM_039802958.1 mRNA downstream 7927 19540250 ~ 19544265 (+) False dguok
XM_039802956.1 mRNA downstream 8203 19540526 ~ 19544265 (+) True dguok
XM_039802957.1 mRNA downstream 8203 19540526 ~ 19544265 (+) False dguok
XM_039802954.1 mRNA downstream 12006 19544329 ~ 19547286 (+) True spaw
TU84360 other upstream 69226 19434907 ~ 19448950 (+) False rasl10a
XR_005639481.1 other upstream 837015 18661157 ~ 18681161 (+) False acacb
TU83744 other upstream 1098586 18416128 ~ 18419590 (+) False tbx5b
TU83742 other upstream 1102170 18407387 ~ 18416006 (+) False tbx5b
TU83701 other upstream 1186946 18330705 ~ 18331230 (+) True G62513
XR_005639482.1 other downstream 945489 20477812 ~ 20488838 (+) False wdr31
XR_005639483.1 other downstream 945489 20477812 ~ 20488838 (+) False wdr31
TU85087 other downstream 1144094 20676417 ~ 20677916 (+) True G63480
XR_005639510.1 other downstream 2056553 21588876 ~ 21598799 (+) False LOC120560787
TU85622 other downstream 3397576 22929899 ~ 22930205 (+) True G63905

Expression Profile