RNA id: XM_039802954.1


Basic Information

Item Value
RNA id XM_039802954.1
length 2207
RNA type mRNA
GC content 0.47
exon number 3
gene id spaw
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 19544329 ~ 19547286 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTTCTGCATGTGTGAAATTTGACTTTTCTTCTGCCACTGTTACTAAACGGAAATGTGCTAATTGCTGTACAGCATTGCAAGTGTTATTAGTGGATGGATCTTTATGTTTCAAAAGGATTAGGCTCCTGAGTGAATATAAAAGCCCAGGCAGATTGACAGGACAATGACCTTGGCtaaatgttttctttgtctCCCCCTCTTGAGTGCTATGATGATCAGAGGGGCTGTTCAGATGCCTGGAGTGGTCAGGGGTCATCAAAGGGCAGCTGTCCACTATAAAGGGGCCTGTCTGGAGCTCCGTCTGCACATAGCATCATTTCAGCCTGAAGCCAgctggaggaaggaaggagatctttgcttctctctctcattaTTGTTGGAGCAGATTTTGTGGGTTTCAGTTCAAATGGAAGCCAGAGTTCTGACAGTTTTTTGCACATTCCTCCTCTGCTCTTTTGGAGTCGTTTTCTCCACCCAGAGGCACAGATATCTCACAGGCCTCAAGACCAGTTTAGCATTCAGAAATCTCTCATTTAATCATCGCAGCAGATACCCTCTGTACATGATGCAGCTGTACCGCTCCTTCAGGACTGCTGATTCCTCATCGCCGGTAGCTATTGACACCATTACAATGCAAGGTGACAACCCGTCAGCACACAGTTCTGACTCTGTCCTAAGTCTGATGGCCAGAGGTTGCCATCAAGTGGGTGAAAGATGGACAGTCACATTCGACATGTCATCCATCTCTACCAATGAGCTTGTCCAGCTGGCAGAACTTCGGATCAGACTACCTGCTTTCTCTGGCTCCAAGCGTGCCACCGTGGATTTATATCACTCTGGAAAGAGTTGTGACCATGGCAGCACATCATGCCAGGATGAGCACCTTTTCCTGGGGAGCTTAGACACATCAGCCAGCAGCACAAAGTCTGCCTGGAAGGTTTTTAACGTGACTGCCCTGTTAAAATACTGGCTGTACCAGGGAGATGGAGTGTCGAGCCAAGAGGCCTCAGGAGAACCTGAGGCGGACCATGGGAGCGGTGCTGGGGATGAAGGTGACATCACTGACAAGTCACTCTTCAAGAATTTGGGATTTAGGCAAAGAAAAATACACCATCCAACAACAAATCGGGTCATGATGGTTATCTTCTCTAAGCACAACCTGCCCCAGGAAGGCCAAACAGCACACAGTCTCATTTACACTGTGGAGAACTCCAAGTACGTGACGATGGACAGAGTCAGCAGTGACAGTCAAAGTCGACGCCACAAAAGGAACAGAATGGAGAGAATGAGGGTGGCTGCAGGAGCTTCACCTACTCCTGCACCAGCAGCAGAGCTGGCCCAGAGGCCGCTGTGTCGGAAGGTAGACATGTGGGTGGACTTTGACCACATCGGCTGGGACGAGTGGATTGTGCACCCTAAACGCTACAATGCATTTCGCTGTGAGGGAGAGTGTCCTACACCACTGGATGAGTCCTTCAACCCAACCAACCATGCGTACATGCAGAGCCTCTTGCAACATCACCATCCAGAAAGAGTATCTTGCCCATCCTGTGTGCCGACGCGTCTCAGCCCACTCTCCATGCTGTACTACGAGAATGATGATTTGGCCCTGCGGCATCACGAGGACATGATTGTTGAAGAGTGTGGATGTCACTGAAGGCCAGCACATCACTGGTTTCACTGCAGTCACAAAAGCAGCTATTGACGGAGCATAATCTTGAACTTTAATGCAACTGCCTTCTTAACCGTCTTCATGTAAACATTAATGCTCAATTATtaggggcgacctctagctcacccagtaagagcgtgcgccccatgtaggctgagtcctttgcagtggcccagggttcgagtccgacctgtggccctttgctgcgtgtcatcccccatctctctctcacaccttTCCTGtttatccactgtcactatcaaataaaagggaaaagccccaaaataatctttaaaaaaaagttcaattaTTAAATTTAAAGTTCCTAGTCATGACCTCTTACAATAGGATATGACTGTTAAGTTTGAATGACAATATATTTCATCCATACTGGGTGGTACACAATAGTATATATATCTTTAGTTAGGAGAAGGCTCCGTTATGCAAATGTGATATGTTGTGTCTATTTATACATtataatgtatattttgtaCATAAAATATGAAACATATATTAAAACCTTATTTTGACAtga

Function

GO:

id name namespace
GO:0003140 determination of left/right asymmetry in lateral mesoderm biological_process
GO:2000223 regulation of BMP signaling pathway involved in heart jogging biological_process
GO:0060971 embryonic heart tube left/right pattern formation biological_process
GO:0040007 growth biological_process
GO:0001947 heart looping biological_process
GO:0035462 determination of left/right asymmetry in diencephalon biological_process
GO:0035469 determination of pancreatic left/right asymmetry biological_process
GO:0005576 extracellular region cellular_component
GO:0008083 growth factor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005639511.1 lncRNA upstream 390745 19151533 ~ 19153584 (+) True LOC120560789
TU84161 lncRNA upstream 457467 19084934 ~ 19086862 (+) True G62836
TU84159 lncRNA upstream 457467 19085914 ~ 19086862 (+) False G62836
TU84163 lncRNA upstream 462675 19081080 ~ 19081654 (+) False tmem119a
TU84099 lncRNA upstream 561706 18966083 ~ 18982623 (+) True G62796
TU84387 lncRNA downstream 2124 19549410 ~ 19554906 (+) True G63005
TU84391 lncRNA downstream 8097 19555383 ~ 19562350 (+) True G63007
TU84393 lncRNA downstream 8097 19555383 ~ 19562350 (+) False G63007
TU84401 lncRNA downstream 28275 19575561 ~ 19581840 (+) False G63015
TU84402 lncRNA downstream 28275 19575561 ~ 19633642 (+) True G63015
XM_039802958.1 mRNA upstream 64 19540250 ~ 19544265 (+) False dguok
XM_039802956.1 mRNA upstream 64 19540526 ~ 19544265 (+) True dguok
XM_039802957.1 mRNA upstream 64 19540526 ~ 19544265 (+) False dguok
XM_039802955.1 mRNA upstream 4295 19536302 ~ 19540034 (+) True tcn2
XM_039802953.1 mRNA upstream 12006 19518176 ~ 19532323 (+) True si:ch211-102c2.8
XM_039803000.1 mRNA downstream 201915 19749201 ~ 19753977 (+) True sftpbb
XM_039803002.1 mRNA downstream 212310 19759596 ~ 19763524 (+) False c6h2orf68
XM_039803001.1 mRNA downstream 213507 19760793 ~ 19763524 (+) True c6h2orf68
XM_039803014.1 mRNA downstream 252836 19800122 ~ 19806542 (+) True selenom
XM_039803582.1 mRNA downstream 335924 19883210 ~ 19887470 (+) True mthfd2
TU84360 other upstream 95379 19434907 ~ 19448950 (+) False rasl10a
XR_005639481.1 other upstream 863168 18661157 ~ 18681161 (+) False acacb
TU83744 other upstream 1124739 18416128 ~ 18419590 (+) False tbx5b
TU83742 other upstream 1128323 18407387 ~ 18416006 (+) False tbx5b
TU83701 other upstream 1213099 18330705 ~ 18331230 (+) True G62513
XR_005639482.1 other downstream 930526 20477812 ~ 20488838 (+) False wdr31
XR_005639483.1 other downstream 930526 20477812 ~ 20488838 (+) False wdr31
TU85087 other downstream 1129131 20676417 ~ 20677916 (+) True G63480
XR_005639510.1 other downstream 2041590 21588876 ~ 21598799 (+) False LOC120560787
TU85622 other downstream 3382613 22929899 ~ 22930205 (+) True G63905

Expression Profile