RNA id: TCONS_00074579


Basic Information

Item Value
RNA id TCONS_00074579
length 791
RNA type mRNA
GC content 0.45
exon number 6
gene id XLOC_038010
representative False

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 34938316 ~ 34945582 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGGAGCATTGGGTATCAATTTGGTCAAACAGCGGGTGATAAAATGGTAGGTGacatataaattaaaaacattgctGTCGTTTTCTGCTTCTGTGTTCGACGGAGAAGATCTGGCAAACCATAAACTAAAATCCTCCCAAAAGGACAAGGTACGGCAGTTCATGTCCTTCACTCAAGCCGGGGAGAAGACCGCCGTTTACTGCCTCACTCAAAATGACTGGAAACTAGAGGTGGCCACCGACAACTACTTTCAGAACCCAGATTTGTACCACAAGGAATCCATGAAAAGCTCAGTGGACCGAAAGAAGCTGGAGCAGCTTTACAATCGATATAAAGATCCCCAGGATGAGAATAAGATCGGGATTGACGGAATTCAGCAGTTTTGTGATGATCTCAATCTGGATCCAGCGAGCATCAGTGTTCTGGTTGTGGCATGGAAGTTTCGTGCAGCAACCCAGTGTGAATTCAGCAAGAAAGAGTTCATCGATGGCATGACAGAGCTGGGGTGTGACAGTCCAGAGAAACTTCGAGCACTTCTGCCCAGATTAGAACAGGATCTGAAAGACAGCGGAAAATTCAAAGATTTCTATCAATTCACCTTCAACTTTGCCAAGAATCCAGGGCAGAAGGGTTTAGATTTAGAGATGGCAGTAGCATATTGGAACCTGGTTCTGGCTGGACGTTTTAAGTTCCTAGACCTCTGGAACAGATTTTTATTGGAGCATCATAAGCGATCAATTCCCAAAGATACGTGGAACTTGCTTCTGGATTTTGGCAATATGATTGCAGATG

Function

GO:

id name namespace
GO:0045116 protein neddylation biological_process
GO:0051443 positive regulation of ubiquitin-protein transferase activity biological_process
GO:0000151 ubiquitin ligase complex cellular_component
GO:0097602 cullin family protein binding molecular_function
GO:0031624 ubiquitin conjugating enzyme binding molecular_function
GO:0032182 ubiquitin-like protein binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-020416-2 Predicted to enable cullin family protein binding activity; ubiquitin conjugating enzyme binding activity; and ubiquitin-like protein binding activity. Predicted to be involved in positive regulation of ubiquitin-protein transferase activity and protein neddylation. Predicted to be part of ubiquitin ligase complex. Is expressed in several structures, including adaxial cell; axis; lens; pectoral fin; and pharyngeal arch 3-7 skeleton. Orthologous to human DCUN1D2 (defective in cullin neddylation 1 domain containing 2).

Ensembl:

ensembl_id ENSDART00000131908

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00074574 lncRNA downstream 23935 34908935 ~ 34915388 (-) True XLOC_038008
TCONS_00074570 lncRNA downstream 61951 34874903 ~ 34877372 (-) True XLOC_038006
TCONS_00074565 lncRNA downstream 126440 34773621 ~ 34812883 (-) True XLOC_038001
TCONS_00075417 lncRNA downstream 126441 34712779 ~ 34812882 (-) False XLOC_038001
TCONS_00075419 lncRNA upstream 208489 35154055 ~ 35160615 (-) False XLOC_038013
TCONS_00075004 lncRNA upstream 209264 35154830 ~ 35161005 (-) True XLOC_038013
TCONS_00074592 lncRNA upstream 686727 35632293 ~ 35633657 (-) True XLOC_038015
TCONS_00075420 lncRNA upstream 735402 35680968 ~ 35832754 (-) True XLOC_038016
TCONS_00075005 lncRNA upstream 1045098 35990664 ~ 35995392 (-) True XLOC_038019
TCONS_00074575 mRNA downstream 2067 34920001 ~ 34937256 (-) False XLOC_038009
TCONS_00074576 mRNA downstream 2298 34931878 ~ 34937025 (-) True XLOC_038009
TCONS_00074572 mRNA downstream 23929 34902971 ~ 34915394 (-) False XLOC_038008
TCONS_00074573 mRNA downstream 23972 34903266 ~ 34915351 (-) False XLOC_038008
TCONS_00074571 mRNA downstream 53421 34884933 ~ 34885902 (-) True XLOC_038007
TCONS_00074581 mRNA upstream 24852 34970418 ~ 34974416 (-) False XLOC_038011
TCONS_00074582 mRNA upstream 24854 34970420 ~ 34974143 (-) True XLOC_038011
TCONS_00074583 mRNA upstream 33301 34978867 ~ 34986827 (-) True XLOC_038012
TCONS_00074584 mRNA upstream 80849 35026415 ~ 35069777 (-) False XLOC_038013
TCONS_00074587 mRNA upstream 82731 35028297 ~ 35069645 (-) False XLOC_038013
TCONS_00074567 other downstream 87519 34848860 ~ 34851804 (-) True XLOC_038004
TCONS_00074564 other downstream 186164 34753044 ~ 34753159 (-) True XLOC_038002
TCONS_00074544 other downstream 1017752 33921464 ~ 33921571 (-) False XLOC_037985
TCONS_00074543 other downstream 1018299 33920932 ~ 33921024 (-) True XLOC_037984
TCONS_00074537 other downstream 1154816 33783555 ~ 33784507 (-) False XLOC_037982
TCONS_00074593 other upstream 756089 35701655 ~ 35701772 (-) True XLOC_038017
TCONS_00074595 other upstream 1173394 36118960 ~ 36120526 (-) True XLOC_038020
TCONS_00074596 other upstream 1815323 36760889 ~ 36761294 (-) True XLOC_038023
TCONS_00074597 other upstream 1820057 36765623 ~ 36766028 (-) True XLOC_038024
TCONS_00074598 other upstream 1824791 36770357 ~ 36770663 (-) True XLOC_038025

Expression Profile

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