RNA id: XM_039802957.1


Basic Information

Item Value
RNA id XM_039802957.1
length 1580
RNA type mRNA
GC content 0.44
exon number 8
gene id dguok
representative False

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 19540250 ~ 19544265 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGCATTTTGGACACTTTTTTTGCACAATTTCTTATGAACTTACCTTAATAATTTCACTTCTAATAAGCTAATATGCGAAAGTATAGGGCGAGCGCTACAGAAACGATTTAGCAAACGTATTGGCGTTTATTTAGCTTAACATATTTAACTATAAATCGATTAGTTTATTAGTACGTTAGCATACATCCATGGTTAGCATACATCATGGAGAGGAGGAGCTAGCTACTAGTTACCATGCGCTTAACTCAGCGTGGAAGACACATGAAAGCCTCCTGCGAGTTGAAAACACAGCCATAATACAGACAACAAGGAACCAAAGTAGTATGGCTAATAATTCAAGGAAGCTCAGTTTTTCTTGTTCAAGGGGCCTGTCAAGTTCAACTGAGAACGCAGCAGATCGGGTGAAGAGGGTTTCTATCGAGGGCAACATTGCTGTTGGAAAGTCGACCTTTACAAGACTCTTGCAGGCAGCTTGTCCTGACTGGGAGGTGGTGGCAGAACCGGTCAGCAAGTGGCAGAACATTGAAAGTGGGACCTCAAAGGGGACAGACGCATCCCCCCAGACGACAGTCAGCAACCTGCTGCAGATGATGTACCAGGACCCACAGCGCTGGTCGTacacatttcagacattttccTGTATGAGCCGGCTGAGAACGCAGCTGCAGCCTCCCCCAGCTCGCCTGCTCAGCTCAGAGGGAACACCTCTCCAGGTGTACGAGCGCTCCGTCTATAGCGACAGATACATCTTTGCCCTGAACATGTTTGAGCTGGGTTGTATCAACTCTACTGAGTGGGCAGTCTACCAGGACTGGCACTCTTTTCTGGTGGAGCAGTTTGGACACCAGGTGGAGCTGGAGGGCATCATTTACCTCAGAGCCCCACCAAAGaaATGTAAGGAGCGTCTTGAGCGTCGGGGCCGGGCAGAAGAGAAAGGAGTGGAACTGGACTATCTGGATAAGCTGCACGTTCAACATGAGAGGTGGCTTGTTGAAAAGAGCACTGAGATACATTTTGAGAAGTTGAAACACATACCTGTGTTACAACTCGATGCCAGTGTTGAGTTTCAGAGTGACCCAGAGGTGCAAGATGAATACATAACAAAGGTGAAGAATTTCTTCAATGCTTTGTGAGTCTGTTAACATCTGCAGGGGAAACCGATGAGACCATTCAGACCTCAGTCAGTCGCCTGTGTTAGCTGACACATAACTGCACGAGCCTCTCATAGAGTGAAGGAAATATAAAGTAATATAAAAGGTTAAGCTACAGGACGTACAtgaaacagacacagactgagTTTTGTCAAATGTGTTACCTCCAAAGAGACTTTTAGATTGTTACAGCTTTTTGTTGttggcatgtttttttttgttttgcgaTTCACTGGGTAGTTAACGTTACTTCTTATACTGTGCTGTTAATTCcacttaaattaaaaatgtagaaATATAATGGAATGTAAAAACTGTGCTGTCACTACTATGACCATTTGGAAACTTGTTTACTGAGCATCATACCGTTTTTGTGTATGTTACTGTTTTACACATTCctgataataaataaaaacctttgaaaaaaaa

Function

GO:

id name namespace
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0005524 ATP binding molecular_function
GO:0016773 phosphotransferase activity, alcohol group as acceptor molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005639511.1 lncRNA upstream 386942 19151533 ~ 19153584 (+) True LOC120560789
TU84161 lncRNA upstream 453664 19084934 ~ 19086862 (+) True G62836
TU84159 lncRNA upstream 453664 19085914 ~ 19086862 (+) False G62836
TU84163 lncRNA upstream 458872 19081080 ~ 19081654 (+) False tmem119a
TU84099 lncRNA upstream 557903 18966083 ~ 18982623 (+) True G62796
TU84387 lncRNA downstream 5145 19549410 ~ 19554906 (+) True G63005
TU84391 lncRNA downstream 11118 19555383 ~ 19562350 (+) True G63007
TU84393 lncRNA downstream 11118 19555383 ~ 19562350 (+) False G63007
TU84401 lncRNA downstream 31296 19575561 ~ 19581840 (+) False G63015
TU84402 lncRNA downstream 31296 19575561 ~ 19633642 (+) True G63015
XM_039802955.1 mRNA upstream 492 19536302 ~ 19540034 (+) True tcn2
XM_039802953.1 mRNA upstream 8203 19518176 ~ 19532323 (+) True si:ch211-102c2.8
XM_039803075.1 mRNA upstream 35982 19454432 ~ 19504544 (+) False osbp2b
XM_039802954.1 mRNA downstream 64 19544329 ~ 19547286 (+) True spaw
XM_039803000.1 mRNA downstream 204936 19749201 ~ 19753977 (+) True sftpbb
XM_039803002.1 mRNA downstream 215331 19759596 ~ 19763524 (+) False c6h2orf68
XM_039803001.1 mRNA downstream 216528 19760793 ~ 19763524 (+) True c6h2orf68
XM_039803014.1 mRNA downstream 255857 19800122 ~ 19806542 (+) True selenom
TU84360 other upstream 91576 19434907 ~ 19448950 (+) False rasl10a
XR_005639481.1 other upstream 859365 18661157 ~ 18681161 (+) False acacb
TU83744 other upstream 1120936 18416128 ~ 18419590 (+) False tbx5b
TU83742 other upstream 1124520 18407387 ~ 18416006 (+) False tbx5b
TU83701 other upstream 1209296 18330705 ~ 18331230 (+) True G62513
XR_005639482.1 other downstream 933547 20477812 ~ 20488838 (+) False wdr31
XR_005639483.1 other downstream 933547 20477812 ~ 20488838 (+) False wdr31
TU85087 other downstream 1132152 20676417 ~ 20677916 (+) True G63480
XR_005639510.1 other downstream 2044611 21588876 ~ 21598799 (+) False LOC120560787
TU85622 other downstream 3385634 22929899 ~ 22930205 (+) True G63905

Expression Profile