RNA id: XM_039802987.1


Basic Information

Item Value
RNA id XM_039802987.1
length 3695
RNA type mRNA
GC content 0.52
exon number 11
gene id rhobtb4
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 16572328 ~ 16616256 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATGTGGGTCAATTCCGGAACCGTCGGAAGGGCCCTCTCCATGGATATAGACACAGACTATGAGCGGCCCAATGTGGAAACCATTAAATGTGTGGTGGTAGGGGATAATGCAGTAGGCAAGACCAGGCTAATCTGCGCCCGGGCCTGCAATGCCACCCTCACACAGTATCAGCTGCTTGCCACCCACGTGCCAACCGTCTGGGCCATCGACCAGTACCGTGTATGCCAGGAGGTGTTAGAGAGATCTCGTGATGTAGTGGATGAGGTCAGTGTGTCCCTGAGGCTATGGGACACATTCGGGGATCATCACAAAGACAGACGATTTGCCTATGGCAGGTCAGACGTAGTGGTGCTTTGCTTCTCTCTGGCTAATCCCAATTCCCTGCGCCATGTACGCACCATGTGGTTTCCGGAGATCAAGCACTTTTGTCCCCGGACACCCATCATTCTGGTTGGCTGCCAGCTGGATCTGCGCTATGCTGACCTGGATGCAGTTAACCGTGCACGCCGACCCCTAGCCAAACCCATCAAACCAACTGATATCCTTCCACCAGAGAGAGGCCACGAGGTGGCAAAGGAACTTGGGATTCCCTACTATGAGACCAGCATTGTTGCTCAGTTTGGAGTCAAAGATGTTTTTGACAATGCCATCCGAGCTGCCCTGATCTCCCGTCGTCACCTGCAGTTCTGGAAGTCCCACCTGAAAAAGGTCCAGAGGCCACTTCTCCAGGCTCCCTTCCTGCCTCCTCGCCCGCCTCGCCCCATAGTGGGCATCCCAGACCCTCCTCCCACAGAGGGCGAGGGCCCTGATTCCCTTTTCTGCCAGCCACTGTGTACAGATGTTCTCTTCCTTCTGCAGGGTGGCGGCACTCGCGTGTTTGCACACAAAGTATATCTGGCTACTTCCTGCTCCAAATTCTATGACCTCTTCACCCTTGATCTTGGCGGATCATGCATGGGGCCACGGTGGGAGGAACAAGAGAGCAAAGAAAACTTGGAGAGTGGGGAGGAAGATGAGCAGAGCAGGAGAGGAGCTAAAGAGCAAGCTGGGCGCACTAAGAGCCTGGACATTGATAAGGATGGGGTTGATGGAGGAGTGCGGGGCCTGAATCGACCCCAGTTGCTCCAGCAGGGCTCTTTGAGGACTTCCCAGAGTGATAATGCACTCCCCTCTCGAGCCCACTACTACCTGGGAGCACTAGGGACTGGTCGAGCACTGTCAGgatggggaagggggttcctgagtgtgtgtctggagCATGTTGATGATCCCATGACTGGACGACCACGACTCATGACTGTGGTAGCCATGGATGCGCTTATACAGGAAGAACCATTTAAGGCGGTGCTTCAGTACCTGTACACGGGCAGTCTGGACGAGGGCCGAGGGGATCTGATGCAGGTGGCCACCATCGCAGAGCTGCTTGAGGTCTTTGACCTGCGGATGATGGTGGCCAATGTTCTCAACAGAGAGAGCTTCATGAACCAGGAGATCACCAAGGCTTTCCACGTCCGCAGAGCCAACCGCATCAAGGAGTGTCTCAATAAAGGGACCTATGCTGATGTGGTCTTCCGACTGGACGATGGCTGCCTCCCGGCCCACAAGCCCCTGCTCATCTCCAGCTGCAACTGGATGGCTGCCATGTTCCGTGGCTCTTTCATGGAAAGCTACATTGAGGAGGTATCCATTCCTGACACCAGTGCAGCCTGTATGCGTGGGACGTTGGAGTTCCTGTACTGTGGAATGCTGACACCCTGTCCTGGTCTGGATCCCATGGAACTAATTATTCTCGCCAACCGCCTGTGTTTGCCACGCCTTGTCGCCCTCACAGAACAGCACGCTGTGGACGAACTTCTCCAGTTGGCAGCGAAAGGAGGTGACATTGATGGACAAGTGTTGGCTTACCTCGAGCTTGCACAGTTCCACAATGCCAAGCAACTATCCGCTTGGTGTCTCCACCACATCTGCACTAATTATAATAGCATCTGCCGCAAGTTTCCCAAAGACATGAAGGCCATGTCTCCAGAAAACCAGAGGCACTTTGAGAAGCAGCGCTGGCCTCCTGTGTGGTTCCTGAAGGAGGAGGACCGCTATCTGCGCTCTCAGAAGGAGCGCGAGCGTGAGGAGGAGATCTTGCGCAAGCAACACACCAAACGGGGCTGGTGTTTCTGGAGACACCCGTCCTCCTCTCCGCACGTCTCCTAAAGGGTTTTCCACCACTGACTTCTTTACCCCGACCTGGGTCATCCTACccactaaccccccccccccctgtaacGCATATACGTAGAGGAGGTCCGCTTTAAATCCTCTATCAGTGGAGAAATGACTCTCAGTGCTACGATGCCTGAATGTCAGCATGTTTGGGGGAATGTATGTGCCTCTTTATAATTGTGGGTGACTTCATTAGTGTATTCTTGGTATGCTTGTTTGGACTTAGCTGAAGGGTATATGCGTggatgcgtgtgtgtatgtttgcggTTGGCATGATTGAGTGATGCTTCCGAGTTGAGTGCTTCCCAGACGCCCTGATCTATAAGGGCCTGCAGCGTCGCAGTCCCAGCCCTTTGTCCCCTCCACAAGAGCTCTGTCCCTCCACCAGCACTCACAGTGTCCAAGCCTTTGAGTGATTTGCCTGGGAGCAAGGGCTCTCTCGATCTCTCTCAGTCTCCTTCCTTCACATTGACCTTAATGACTATTACACATTGACCACTGCAGCTCCTTTCGGGGAGCTTACCTCTGCCTTCACTTCTACGCAGACTGTTAGCTGGCACACACAGACCGGTGCAAAAGATCCACCCCTCTAAAACCAGCACTGGATTCCCAGGAACTGACACTTAACAATGTAATTATTGTTTTGCTTTTATTCGtcctttttatgtatttttgcgCCCTTCTAGGACACTCTTATCAGGGGAAATGGCGCACACTACTCCCAGGAAGTGTTGCAAACTTTGATTGCCATTGCAACGATGGGACTGTTAATCTAGAGCCCAGGTTAGGGTGTAAGGGCAACCCTAAAACCGTTAGCAAGTTGGGATGCTCCAGTCAGGAGGCTTGATCATAGCTGTTAGCCTCCAGTCCAGTACTGAAGTGGTTCTTGGTGTCCATCGTTCACTCCTGTGCATCCCGCCCAGTCCTCCTGCACAccccgcaaaaaaaaaaaaaagaagcaaaacacACGCTCTCCTTGATGAGTTGGATTCACCAATCTGCACTTCAGAGACATTCAAAGTGACCAATCTATAGCAATGATGGGGATGAAGAGGGCTAGCCTTCCTTGATACCTCTGCCATTGAGGAATGATGGATGCAGTATTAAACAAATGCGTTTGTAACGTCCATGACCACTTGGTTGCATTGAAGCACCTCAGCCAGCCTGCCTTTACACCCCTAGCCCACTAGGGGCAGCACTGCTCAGGGCCCCGGCACTAACCTTCACACTAACGGGAGTTTTTGTGCCTGTGATTGCTTCACTCTAGTTTCAATTATTAAATCAGTATAACTTCAATCCTTGCAGAGTGTTAGGAGAAAGCTAAAGCACAGTGTTGTGACGAGTAAAATGGACTGTACCTGACGATAGATTTTTCACCTAATTGTGAATACCAAAGCTGTGATTCTTTTGATCTCTTTCTTCCTCACGTACTTTATTTCTGCTTCCCTGCTTCCTTTATGGGCAAGAGGGGATGGAGgaga

Function

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07868 RHOBTB1_2; Rho-related BTB domain-containing protein 1/2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU83128 lncRNA upstream 24211 16567482 ~ 16567714 (+) True G62082
TU83073 lncRNA upstream 77882 16512171 ~ 16514043 (+) True G62033
TU83002 lncRNA upstream 393054 16123200 ~ 16198871 (+) True G61975
TU83194 lncRNA downstream 280332 16896588 ~ 16939963 (+) True LOC120560795
XR_005639513.1 lncRNA downstream 289337 16905593 ~ 16943176 (+) False LOC120560795
TU83185 lncRNA downstream 289349 16905605 ~ 16942729 (+) False LOC120560795
TU83182 lncRNA downstream 289557 16905813 ~ 16942729 (+) False LOC120560795
TU83197 lncRNA downstream 336669 16952925 ~ 16953637 (+) True G62126
XM_039804383.1 mRNA upstream 37413 16550250 ~ 16554512 (+) False wdr54
XM_039804384.1 mRNA upstream 37413 16550257 ~ 16554512 (+) False wdr54
XM_039804386.1 mRNA upstream 37413 16550325 ~ 16554512 (+) False wdr54
XM_039804385.1 mRNA upstream 37413 16550356 ~ 16554512 (+) True wdr54
XM_039803788.1 mRNA upstream 51740 16537126 ~ 16540185 (+) True LOC120560896
XM_039803498.1 mRNA downstream 12265 16628521 ~ 16663697 (+) True si:dkey-40c11.2
XM_039803499.1 mRNA downstream 12271 16628527 ~ 16663697 (+) False si:dkey-40c11.2
XM_039802676.1 mRNA downstream 208559 16824815 ~ 16895188 (+) True mef2cb
XM_039802674.1 mRNA downstream 208559 16824815 ~ 16895188 (+) False mef2cb
XM_039802678.1 mRNA downstream 219218 16835474 ~ 16895188 (+) False mef2cb
TU83072 other upstream 57776 16533329 ~ 16534149 (+) False LOC120560897
TU83070 other upstream 116020 16468367 ~ 16475905 (+) False LOC120560890
XR_005639530.1 other upstream 116028 16468323 ~ 16475897 (+) False LOC120560890
TU82943 other upstream 814784 15763114 ~ 15777141 (+) True mctp1a
unassigned_transcript_261 other upstream 972781 15619073 ~ 15619144 (+) True trnac-gca_21
XR_005639579.1 other downstream 1382430 17998686 ~ 18009318 (+) False cmya5
TU83701 other downstream 1714449 18330705 ~ 18331230 (+) True G62513
TU83742 other downstream 1791131 18407387 ~ 18416006 (+) False tbx5b
TU83744 other downstream 1799872 18416128 ~ 18419590 (+) False tbx5b
XR_005639481.1 other downstream 2044901 18661157 ~ 18681161 (+) False acacb

Expression Profile