RNA id: XM_039802997.1



Basic Information


Item Value
RNA id XM_039802997.1
length 987
RNA type mRNA
GC content 0.49
exon number 3
gene id LOC120560454
representative True

Chromosome Information


Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 2551428 ~ 2552694 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


CTCCCTCATGAGCTGAGGTTTCTGATGCCAAAAACAAACATCATGGATGGTGAGGCAGGAAAGTATGACCTAAGAACCATCACTCAGTTCATAAGACAGGAAACCAAGCCAGTTCCCTTTGGAGAGTATGGGGATTCAGATGGCTGGAACGGGATCTCTGTGTCTGCACACTACCTAACTGACTGCCTACTGCATGAGTACAAACACCAGGAGGGTGCTATCACAAAGCTTCTTCAGGGCACCTTTGGACAGGCTTTCCGCTCAGACCACACACGGAAAGTTGCTAGGAAGGTCACCTTTTCATCTGGGACCATGTCATCATATGCAGTCATGAATGAGAACTGGATGATCCTTTCATGGGTGATGGTGCAGTCTGAGACAGAAAAGTCACTGAAGCCCATGTATGAAGGTGTAGCACACCGCTACAACACTGCAGGCATAGAGAAGGCACACTACCAGCGGGTAGACAGggATTGCTGCGCAGCATTTAAGGTTGCAGAATCTTACACAGGAGAGCACATGAACTGGGATGCTTGGACAACTACTAATGGCATTGTTGCTGATGCCACTACTGGTGACCTGCTGAACACCTGTGCATCAAGATCCCActacaataaaaacataattatcaAGCTGGACTTGTTCCACTGTTTGAGATGGTTCCTCCGTGAGTGTGTGTCAGAGCATCATCCCCTGTACAGTTCCTTTGCTCAGTTCCTGTCGGCAGCCTTTTCAGTGGTGGATCAGGAAGACCTGCAGAGGCTTAAAGAGGCAAATGCCTTCTGTGGCATTCAGCCTGCCAACCCAACAAAGGCACACATTTATGAGCACTGCAGGACCAGAATTCCACAGCCGGAGGAGCTCGCCAAGAGAGTCAAGGGAGTTTTCCAGCACTTTTACCTCGCAACTGATCAAAACGGCGTTCCTCTCTTCAAGCCCTCTATGCTGAAGACATTCAGCGCATACACATCTTGCGCGGGTGCCTGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU78777 lncRNA downstream 389 2550840 ~ 2551039 (-) False LOC120560995
TU78765 lncRNA downstream 33227 2517955 ~ 2518201 (-) True G58596
XR_005639571.1 lncRNA downstream 59634 2491267 ~ 2491794 (-) True LOC120561196
TU78755 lncRNA downstream 71820 2476272 ~ 2479608 (-) True G58588
TU78726 lncRNA downstream 216406 2334746 ~ 2335022 (-) True G58560
TU78800 lncRNA upstream 3951 2556645 ~ 2556863 (-) True G58625
TU78863 lncRNA upstream 163207 2715901 ~ 2716316 (-) True G58678
TU78904 lncRNA upstream 249048 2801742 ~ 2801971 (-) True G58716
TU78913 lncRNA upstream 260677 2813371 ~ 2813695 (-) True G58725
TU78936 lncRNA upstream 281494 2834188 ~ 2837683 (-) False LOC120561349
XM_039803937.1 mRNA downstream 62 2550046 ~ 2551366 (-) True LOC120560995
XM_039802995.1 mRNA downstream 13869 2537218 ~ 2537559 (-) True LOC120560452
XM_039802119.1 mRNA downstream 42614 2504472 ~ 2508814 (-) True LOC120560021
XM_039804524.1 mRNA downstream 195158 2353073 ~ 2356270 (-) True lrrtm4l2
XM_039802074.1 mRNA downstream 220605 2324986 ~ 2330823 (-) True vsig8b
XM_039803791.1 mRNA upstream 26260 2578954 ~ 2592746 (-) True ggt1a
XM_039802027.1 mRNA upstream 66521 2619215 ~ 2627761 (-) True ggt5a
XM_039804090.1 mRNA upstream 114568 2667262 ~ 2671095 (-) False si:ch211-170d8.2
XM_039804089.1 mRNA upstream 114568 2667262 ~ 2670098 (-) True si:ch211-170d8.2
XM_039804088.1 mRNA upstream 117540 2670234 ~ 2683703 (-) True hps4
XR_005639512.1 other downstream 411800 2137796 ~ 2139628 (-) False ankrd39
XR_005639501.1 other downstream 893381 1532053 ~ 1658047 (-) True rimbp2
XR_005639531.1 other upstream 25181 2577875 ~ 2592746 (-) False ggt1a
TU78855 other upstream 133982 2686676 ~ 2688849 (-) False si:ch211-107p11.3
TU78857 other upstream 137916 2690610 ~ 2692522 (-) False LOC120561394
TU79176 other upstream 844475 3397169 ~ 3397496 (-) True G58919
TU79177 other upstream 862933 3415627 ~ 3416854 (-) True G58920

Expression Profile