RNA id: XM_039803000.1


Basic Information

Item Value
RNA id XM_039803000.1
length 1644
RNA type mRNA
GC content 0.44
exon number 11
gene id sftpbb
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 19749201 ~ 19753977 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTTTGCCAACTGTGGTTAAAACCTACAAAGAAGAAGAGCAGCACGGATGTTATTACAGACAAAAATCATCTGCGCCTCATATCGTTTTGTGCTTTTTCACATCATGTCAACATCTGGCTTTTTCCTGGTGGTCCTCGCGGTGTCTCTGTGGCCCGGAGACTCCAGGTTCATCAAACAGAAATCTCTGACATTGGATGTGTGTTCAGAGTGCAGTCAGGTCATCCAGCTGTCTGCCAACATGATTTCCAGCAGAGATACCAAGGAGACTGTATATGGAACCTTGCATGCTCTGTGCCAAAGCCTCCCAAGAGAGCAGGCATCAGAGTGTGAATCACAGGTGAAGATGTATTTGCTGAAAGTCCTGCAGCAGACACCAGGTCACCTGAAACCAGGAGAGACCTGTATGGTTTTTGGACTTTGTGTTGCCCGTAAGGAGGATGAACTGCTGAAACTTCCTCACCATGCCACCAATAAAGATGTATCCAGTTCTGCACTCAACACAGCCACCAGCACCCATGGGCAGTTCAACCCAGCTTGCACCCTGTGTTTGTTTATTATCAAGAAACTGGAAACCTTGTTGCCCAAGAATATGACTgagGATGCTTTGATGAAGATCATGGGAGAGGTCTGTGATCTCGTACCAGAGAGCTATAAGGAACGATGTGATGATTTTGTCGACAAATATGGCACGCAGATAGTCGAATTCCTCTTATCGTCAGCTGCACCTCACACAATATGTACTCTTTTGCACCTCTGTTTGTTCAAGGAGCAGCCTGTTGCAGAGTGGTTCCTCCCCTCGGATTGTGAGTCATGCCGCACGCTGGCTGTGCTGAGCCGACTTCACCTGGGTCTCAACTCTACCGAACCTCTGACTTCCTCTTTCctccagtctgtgtgtgtccaccaCCCCAATGCCATCCCCAAGTGTGATGCTTTCACTAAAATCTATGGCTCCCGACTGCAAAAGGTTTTGGGAAACCAGATGGACGTTCTGCATGCTTGTGAGAGAGCTGATCTGTGCGTGGCCTCCAAGAAGTTGGAGCCACTGGGAAAGAATCGCTGTACTTGGGGGCCAAGCTACTGGTGCAAAGACATTCAAACTGCTCAGAAATGTGGTAACCAGGCCTTCTGTGAGAAGTACATGTGGAAGGAGTGAACCAAACTGCCGCCCTGTGTGCACACAAAGAACTACTTCCTTTTCACAAATGTATTGCACTGATGaatttttataaatgtattgcacttaaactgtttttttttttcttactttttggGGAATTATCCATCTCATATGAATGAGCCATACATATTCATCAAGAAATGTTCTGCTTTGCATGAAGTGTCACAACACTGAGGCTGTGATTCAGTCTGAAACATCAGTTTCTGCAGTGATTAACAGTTTTGTGAAGCGTTATTCTGTAGATTGCTACATGTATGTTATGAATGTAGAAAAAGTTAATTATATAGAATAAGCTCTTGGTATGTATTCAAGACCATTTGGATGACGACTACTCAAAAAAAGCTGCTTCATCTGTTATCTTGTTGCAGTTCTATGATCCCTGGTGCAAAtaaccacatacacacaacaaagtCCTAAAACTAAATTACAATCAAATGGTTTGTCATTAAAATTCAACATACAGA

Function

GO:

id name namespace
GO:0006665 sphingolipid metabolic process biological_process
GO:0005764 lysosome cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU84485 lncRNA upstream 1732 19746949 ~ 19747469 (+) True G63076
TU84473 lncRNA upstream 31726 19716498 ~ 19717475 (+) True G63068
TU84418 lncRNA upstream 92705 19656232 ~ 19656496 (+) True G63029
TU84402 lncRNA upstream 115559 19575561 ~ 19633642 (+) True G63015
TU84405 lncRNA upstream 164728 19581972 ~ 19584473 (+) True G63016
TU84494 lncRNA downstream 5835 19759812 ~ 19763054 (+) False c6h2orf68
TU84495 lncRNA downstream 6777 19760754 ~ 19763054 (+) False c6h2orf68
TU84504 lncRNA downstream 26988 19780965 ~ 19832327 (+) True G63087
TU84572 lncRNA downstream 119124 19873101 ~ 19875144 (+) True G63128
TU84665 lncRNA downstream 261027 20015004 ~ 20015249 (+) True G63189
XM_039802954.1 mRNA upstream 201915 19544329 ~ 19547286 (+) True spaw
XM_039802958.1 mRNA upstream 204936 19540250 ~ 19544265 (+) False dguok
XM_039802956.1 mRNA upstream 204936 19540526 ~ 19544265 (+) True dguok
XM_039802957.1 mRNA upstream 204936 19540526 ~ 19544265 (+) False dguok
XM_039802955.1 mRNA upstream 209167 19536302 ~ 19540034 (+) True tcn2
XM_039803002.1 mRNA downstream 5619 19759596 ~ 19763524 (+) False c6h2orf68
XM_039803001.1 mRNA downstream 6816 19760793 ~ 19763524 (+) True c6h2orf68
XM_039803014.1 mRNA downstream 46145 19800122 ~ 19806542 (+) True selenom
XM_039803582.1 mRNA downstream 129233 19883210 ~ 19887470 (+) True mthfd2
XM_039802415.1 mRNA downstream 135273 19889250 ~ 19891659 (+) True arl6ip4
TU84360 other upstream 300251 19434907 ~ 19448950 (+) False rasl10a
XR_005639481.1 other upstream 1068040 18661157 ~ 18681161 (+) False acacb
TU83744 other upstream 1329611 18416128 ~ 18419590 (+) False tbx5b
TU83742 other upstream 1333195 18407387 ~ 18416006 (+) False tbx5b
TU83701 other upstream 1417971 18330705 ~ 18331230 (+) True G62513
XR_005639482.1 other downstream 723835 20477812 ~ 20488838 (+) False wdr31
XR_005639483.1 other downstream 723835 20477812 ~ 20488838 (+) False wdr31
TU85087 other downstream 922440 20676417 ~ 20677916 (+) True G63480
XR_005639510.1 other downstream 1834899 21588876 ~ 21598799 (+) False LOC120560787
TU85622 other downstream 3175922 22929899 ~ 22930205 (+) True G63905

Expression Profile