RNA id: XM_039803019.1


Basic Information

Item Value
RNA id XM_039803019.1
length 1858
RNA type mRNA
GC content 0.54
exon number 12
gene id cnot6l
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 34170475 ~ 34187620 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGCGGAAGCCCCGTTTGTTGTTCTTCCTTCTGTTTCCGAGACGTTCAGGGTCTAAACGGGTTCAACAGCCGTGTCTGCATGTCTCTACCAATTCCCTCTATAAATCGTCTTCTACTGCTCCCGAATGAAGattaACAGGTATGCCAAAGGAAAAATATGATCCTCCTGATCCCCGCAGATGTTACACCATCATGCCAGCGGAGGAGGCGGCCAATGGGAAGAAGTCTTACTGGGCCGAGCTCGAGATTTCTGGACGAGTGAGGAGCCTGAGCAGCTCGTTATGGACGCTCACCCACCTGACGGCGCTGCACATCAACGACAACAACCTGAGCCGCATCCCGCCAGACATCGCCAAGCTGCCCAACCTGGTCTTCCTCAACCTGTCGTCCAATAAGCTCCGCAGCCTGCCCGCCGAACTGGGCAACATGGTCTCTCTCAGGGAATTGCTTTTAAACAACAATCTTTTACGAGTTCTGCCTTATGAACTCGGGAGGCTTTTCCAGTTACAAACCTTGGGGCTAAAAGGAAACCCTTTGTCCCAAGACATCCTCAATCTGTACCAGGAGTCGGATGGAACCAGGAAGCTTTTGAACTACATGCTCGACAATCTAGCAGTGCACCCAGAGCAGCTCCCTCAAAGACCTTGGATCACTCTGAAAGAGCGAGACCAAATGACTCCCACAGCCGTGTTCACGGTTATGTGCTACAACGTGCTGTGCGACAAGTACGCCACGCGACAGCTGTACGGCTACTGTCCATCCTGGGCCCTTAACTGGGAGTACCGCAAGAAAGGCATCATGGAGGAAATCACCAGCTGTGACGCTGACATCATCAGCCTGCAGGAGGTGGAGACAGAGCAGTACTACACTATGTTTCTGGAAACGCTGAAGGAGCGCGGCTACGACGGCTACTTCTGCCCAAAGTCTCGTGCCAAACTTGTTTCTGAACAGGAGAGGAAACACGTGGACGGCTGCGCTGTGTTCTTCAAAACCGAAAAGTTTACTTTGGTCCAGAAACACACTGTGGAGTTCAACCAGGTGGCCATGGCCAACTCTGAGGGCTCAGAGGTCATGCTGAACAGAGTGATGACCAAAGACAACATCGGGGTGGTCGTTCTGCTTGAGGTCAACAAGGACATGTTCTCCGATGgcATGAAGCCCCAACAGGAGAGGCAGCTGATCCTGGTGGCCAACGCCCACATGCATTGGGACCCCGAGTACTCGGACGTCAAGTTGATCCAAACTATGATGTTCCTGTCTGAGCTGAAGAGCATCGCTGAGAGGGCCTCAGGCTCCATGGCGACCGGTTCGCCGACCTCCAACCCGTCCTCCATCCCCATCGTACTTTGTGCTGACCTCAACTCGCTGCCCGACTCCGGTGTGGTGGAATACCTGAGCAACGGAGGAGTGGCCGAGAACCACAAGGACTTCAAGGAGCTACGCTACAATGAATGTCTGACCAACTTCAGCTGCAACGGCAAGAACGGCAACTCCGATGGAAGCATCACACACAGCTTCCAGCTGAAGAGCGCCTACGACAGCAATCTGATGCCTTACACCAACTACACATATGACTTTAAGGGCGTTATCGACTACATCTTCTTCTCCAAGACCCACATGAGTGTCCTGGGCCTGATGGGACCGCTGGACAGCCAGTGGCtcatcaacaacaacatcacTGGCTGCCCCCACCCCCACATCCCCTCGGACCACTTCTCCCTGCTCGCCCAGCTGGAGCTTCACCCTCCCCTGCCCCACCCGCTCAAACCCCTCAACGGACTGCACCTCCCCGTCCACAGGTAGTGCAGCCGGAGAAAGCCCCCCCAACCTTCCTGCCTCACCTTTAAAAAACACTGTCA

Function

GO: NA

KEGG:

id description
K12603 CNOT6, CCR4; CCR4-NOT transcription complex subunit 6

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005639406.1 lncRNA upstream 293468 33876175 ~ 33877007 (+) True LOC120560041
XR_005639570.1 lncRNA upstream 397941 33769844 ~ 33772534 (+) True LOC120561187
TU89072 lncRNA upstream 414520 33755569 ~ 33755955 (+) True G66571
TU89069 lncRNA upstream 444693 33725520 ~ 33725782 (+) True G66568
TU89049 lncRNA upstream 566888 33601637 ~ 33603587 (+) False antxr2a
TU89177 lncRNA downstream 210 34187830 ~ 34281929 (+) True G66652
TU89217 lncRNA downstream 243322 34430942 ~ 34439928 (+) True G66689
TU89223 lncRNA downstream 268870 34456490 ~ 34456749 (+) True G66692
TU89226 lncRNA downstream 298918 34486538 ~ 34486751 (+) True G66695
TU89323 lncRNA downstream 320522 34508142 ~ 34509613 (+) True G66769
XM_039804184.1 mRNA upstream 379665 33779007 ~ 33790810 (+) False paqr3a
XM_039804183.1 mRNA upstream 379665 33779009 ~ 33790810 (+) False paqr3a
XM_039804185.1 mRNA upstream 379665 33779271 ~ 33790810 (+) True paqr3a
XM_039804107.1 mRNA upstream 566850 33517600 ~ 33603625 (+) True antxr2a
XM_039804106.1 mRNA upstream 597149 33517599 ~ 33573326 (+) False antxr2a
XM_039803801.1 mRNA downstream 85327 34272947 ~ 34280255 (+) True slc25a25a
XM_039803434.1 mRNA downstream 93359 34280979 ~ 34289653 (+) True zdhhc12a
XM_039803435.1 mRNA downstream 93359 34280979 ~ 34289653 (+) False zdhhc12a
XM_039803312.1 mRNA downstream 122480 34310100 ~ 34314260 (+) True LOC120560630
XM_039803311.1 mRNA downstream 128686 34316306 ~ 34330925 (+) True LOC120560629
TU89079 other upstream 394077 33775925 ~ 33776398 (+) True G66578
XR_005639474.1 other upstream 1057659 33077246 ~ 33112816 (+) False cds1
unassigned_transcript_266 other upstream 1598716 32571688 ~ 32571759 (+) True trnap-ugg
TU88651 other upstream 1800491 32364860 ~ 32369984 (+) True G66263
TU88642 other upstream 1840485 32322507 ~ 32329990 (+) True G66256
XR_005639528.1 other downstream 326390 34514010 ~ 34527405 (+) False cfap157
TU89395 other downstream 578326 34765946 ~ 34773700 (+) False LOC120561070
TU89401 other downstream 673879 34861499 ~ 34864266 (+) False G66832
TU89402 other downstream 673879 34861499 ~ 34864266 (+) False G66832
TU89404 other downstream 673879 34861499 ~ 34864266 (+) False G66832

Expression Profile