RNA id: XM_039803050.1


Basic Information

Item Value
RNA id XM_039803050.1
length 3799
RNA type mRNA
GC content 0.45
exon number 8
gene id LOC120560482
representative False

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 29382376 ~ 29390784 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GACACCACACTGATTTTAATCTTTATACAACCGCTCACcaacaagtcattttttattttcacggTTCTTTCACAAGAGACAATGCTGCATCTTTTCACGGAAAGGTTTATTTTTCTTCCCATTTATGAGTTGACACTAATGTCACAGCGTTGTATAAATCTTCTCAAAGCAAAAATGTATCCTCCAACATGACACTAGGTTTCTAATTTAAGCAAATCCAAGTAAgtagtcaaaacattttcagGCCTCCCCTGGTGGTAACTGCCTCACACTCTACCACCCAACTGGAACAGCGGTTTCAATGCCTCAACGCAACGCCAGCGCTCATAACCATGGCAAACTCTGCTCTGCCATggcaacagtgtttttttttcttcacacctGCTAGTTCAGGTGATCACAAGACCTCCCGAACTTAGTAAACTCACTCTAGGTAGAGTCCAAGCTGTAAGACTGCACCCAGCGTCGATCACATCGGTCACCATGAAAGTCGCTGCTGGTCTCATTTTGATGCTGCTAAATGTGCATTTGAGCCGGTCTTGTTCTGAAGAGGGTAACATTTTAATCTGCTCTGCGATACCACCAGTTTTCCCCCCTGGTTATTCAACTCTGGTGATGTTTCTGAAGGATGTTGGGGAGATAAACTCCACTGTGTTTCGCAGTAACAACCTCGCCTCCATAACCAGGCTCAGGATCGACAACGCTGGTGTTACAGGAATCGCTGAAGGGGCCTTCAGTTCTTTCCAGAACCTCAAGAGTCTCCGTTTAAACCACAACTTGCTGACAGAGATTAACCCAAACTGGTTCGGTCGGCCTGATATCCTCAGCGATCTCAGCCTAACCGAAAACCAAATCAAAGTTCTGAATCAGTCCATGCTTAACGGGCTCCTTAACCTTACAAGGCTCAGTCTGAATAAGAACAGGATCAGAACAATTGATCTAAATAGTTTTAGCTCCAACACCATCTTGGCTGAATTGGACTTGTCTGAGAACAGGATGACTCGGGTCTCGCCTCAGGTCTTCAGGTCTCTCAGATCCACCGTGATCCGATTGGATGGGAACCCCTGGGACTGTTCCTGTGGAGCTGAAGACTTTGTCGACTTCCTCAAAGATCTCCAAAACAGATCTCTGCTAGACAGACCGATGGCGGCGACCTGTGAGAGTCCTCCATCTCTGAGGGGTCGACCTGTGTGGAACGTGTCGCTGTGCGTGACGTCTCCTCCACCGAGACTATCGTCGGTTACGCAATCTGTCCATACCAAACCAACTGTTATCCTCACAGCAGTCCCTGCATTCACATCTGCAAAAGTTGTGACAACACCTTCACCACGACCAACATCCGAGACAAAAACCTCTGTCCAACCCAAACCCAGCGATGCACCCATAATAATGTCCTCACACACTGCAAAAGTTGTGACAACGCCTCCATTACAACCAACATCCGAGACAAAAACATCTGTTCAACCCAAACCCAGTGATCTCCTCCTAACGGTCCCTACATCTACTTTAAAGGCTGGTACATTCGGAACTTGCAATACATCACCACCATCATCTGATACAAATATTGTCTGCACACTGGTTGTTGCGATAgTGGTCCTGTTTTCGCTTCTGTTTGTGGTGTGTTTCCTGGCATTGCTGCATCGCAGGAAACGCAACAACAAAACTGTGATGCCTGGCCGTCCGGAAGAAAACCGAAACGAGTTGAAAGAAGACAGCAGATCCAGTTGTGATCAGTCTCCAGGACCCTCTGAGAAAGGAGAAAACAACCACTGGGACTCAGAGATGGGATGGAGGAGATCCTTCACTGGACTCAGAGCTAAGTCAGCTAATGCTATTCTCCTCATGTCTCCTTTTTGTGCACCTGTGAAAGATCAGTGGACTTTACAAACTGAGACCGAGACTCAGTCAAAAGACACAGCAAACCAAGATGAAGGAAAGCAGAAGCTGGGAAATGAAAGTGAAGTAGATGAAGGAATGCAGACAGAAAATCTAACAAACTCTGATGCGATCAAAAATGCTGAACAAGCCGATGTTGGTAGAAATCAAGAGCAAAACTCCCACCATGTTTCTGCAAACGCTGACACCGTGCCTTATCTCAGCATCGGTACAAACCAGAATAAACCCAATCCTGATGGTTTCATCAACCAGTCCACTGATGGTCCAGGTCAAAGATCACAGATGGGAAAAGTAATGGGGAGGATCGCCACCTGGCCTCCAACTGCAGTTCAGTGGCAGGCAAGATGTAAaataaaggaggaggagaggtctGATGTCTTCACTATTTGGACACCAAAGTTTGGAGATGAGGCGAAGAAAGTGTTAAAGAAGAAGGAGCGTCCCTCTGATTCTGACCGGGACAAAAAGGAAGATGACCTTGAGAAAAATGAAATGGATGATTTACAAACCGCTCCAAATCAAGAACCTTTAAAAATGACCGTAGCTCACATGAAGTCGGGAAAGTCTCCGTCAAAACCAAGTGACAAGACCACTTCTTTGGGCAACGCTCTTTCCCACACTGACACAAGGCTAGAGGAGCAGCTAAAGAAGGAGGAGATGATCCAGCACCCTGCTACTGCGAGACAGACCCAACATCTGAATAAGGAAAAACTTGGTCCAAATCAAAACCCGGAATCTTCCGAAAGTCCTGCACTGAACAACCCCAAGAAGAGCAGCAACAAGGCTGAACAGGGGACGGAACCAAAGCAAGCAGTGACAAGCAGGCAGAGGGCAGAGAACAAAAGCACCGGCTCAAGGGCTCCCTCCGGTGGCGCCTCGCCAGATGATGAAACCCTGCTCTCTGGCAACAAGTACGCCTTCATGGACCTGCTGCACGAAGTGGTTCAGAACAACGGTCGCAGGACCAGAGAGAGGTGGAAGCAGGTACAGATCAACAAGCAGCGGCGTCAGGACCGTGGTACCGAAGGAGTTTAGAAAGTTATTCACTTAAAAtattgtagattttttttatcactctttaaccctctgaggtctaagggcatttctCTTAGTCACCTTTTTAGGGTATTTGCATGTAACCTGATaccccatgtgtttcatatcaaaatgttcaaagCAAACTCAGGTAGGTTTGTGAATAGTGAGGCCCAAATGTGTCCTAGAGCAATGTGTGAAGAGGTAATATTGGCCCTGAGGCTGAAAAGCTGAGTTGGCTTTTTGGAATTCCTCAAATCTCTTGTAAAAACCTGTACACCCTTACTCATGTGTTGTGTGATGAATTGTTTTGTTGCTTGAAATTAGTTTACCAAAGTCGAAGGTTCACAAAGGTCgtgtaataaatgaataaaatagtaaataaatgtataatgaatgtctaaaatgaaattttgcAATAGAGCTTTTTGAGGAGTGTTGTGTGAAACATCAATTGGACGTGCCAGCGTGTCCTTTGTCCTCAAAGGGTAAAGTTAAGTAAATTAACTTATTTTGGCCTGCTGCAGAGAAAAATGATCTTTGTCAACACtcaaagaaatagtttgacattttgggaaatgcacttcttttctttcatggcgagagttggatgagatttacCACTCTCACGGCTGGCCATCAAAGGGACACTCCAGTGATTTTGTACGCCACTACCGTTAACTTTCAGTCTCTGGTTTGTGTCAAGCTCcaaatatttcccaaaatgtcccaaaatAATGTGCTTGTGCCGGTAGGTTTGAGGACCTCTAAATGTATCGAGTATTAGGTGTTGCCAGtaaagttaaaggtgctgtaggtaggattgcgaagatccaggacttagccaaaaaatgtgaacatcaacaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005639509.1 lncRNA upstream 251160 29072941 ~ 29131216 (+) True LOC120560778
TU87739 lncRNA upstream 276767 29103988 ~ 29105609 (+) True G65570
TU87732 lncRNA upstream 284063 29078426 ~ 29098313 (+) True G65565
TU87618 lncRNA upstream 380196 28985613 ~ 29002180 (+) True G65473
TU87569 lncRNA upstream 535129 28845626 ~ 28847247 (+) True mboat4
TU87928 lncRNA downstream 156665 29547449 ~ 29614880 (+) True G65710
TU87931 lncRNA downstream 198223 29589007 ~ 29591364 (+) True G65713
TU87952 lncRNA downstream 380855 29771639 ~ 29771864 (+) True G65734
TU87956 lncRNA downstream 421188 29811972 ~ 29812218 (+) True G65738
TU87965 lncRNA downstream 545109 29935893 ~ 29936995 (+) True G65745
XM_039803044.1 mRNA upstream 81 29354120 ~ 29382295 (+) True camsap1b
XM_039803046.1 mRNA upstream 81 29354120 ~ 29382295 (+) False camsap1b
XM_039803045.1 mRNA upstream 81 29354120 ~ 29382295 (+) False camsap1b
XM_039804273.1 mRNA upstream 30620 29344580 ~ 29351756 (+) True ubac1
XM_039803259.1 mRNA upstream 38976 29297122 ~ 29343400 (+) False LOC120560594
XM_039804028.1 mRNA downstream 102468 29493252 ~ 29495142 (+) True LOC120561062
XM_039802188.1 mRNA downstream 105996 29496780 ~ 29503951 (+) True LOC120560080
XM_039802189.1 mRNA downstream 105996 29496780 ~ 29503951 (+) False LOC120560080
XM_039802101.1 mRNA downstream 123242 29514026 ~ 29583569 (+) False col27a1b
XM_039802100.1 mRNA downstream 123243 29514027 ~ 29583569 (+) True col27a1b
TU87830 other upstream 30623 29350124 ~ 29351753 (+) False ubac1
TU87117 other upstream 2080606 27205234 ~ 27301770 (+) True G65084
TU86927 other upstream 2724407 26645020 ~ 26657969 (+) False si:dkey-178e17.1
XR_005639500.1 other upstream 2739895 26614237 ~ 26642481 (+) False cltcl1
TU86793 other upstream 2886115 26494335 ~ 26496261 (+) False c6h22orf39
XR_005639517.1 other downstream 796064 30186848 ~ 30212108 (+) False fbxo21
TU88038 other downstream 856103 30246887 ~ 30250240 (+) False LOC120560820
TU88040 other downstream 857155 30247939 ~ 30250268 (+) False LOC120560820
TU88039 other downstream 857199 30247983 ~ 30251519 (+) True LOC120560820
TU88162 other downstream 1183302 30574086 ~ 30578159 (+) True G65899

Expression Profile