RNA id: XM_039803061.1


Basic Information

Item Value
RNA id XM_039803061.1
length 2058
RNA type mRNA
GC content 0.44
exon number 7
gene id zgc:110329
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 8810554 ~ 8836973 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGGCCGGCCGTACGGAAGTGGTTGTTGTTTCGGTGGCTACATACAATAGCATGTGAGAAATGAGGGCTGCTACGTATTTAAAAttcagttaacgttagctgtcttAAAAGcgttttttatttcattaacaaTATTTGatgtttcattattattattattattatttttatattgccTGAACTAAACGAaggatagctagctagcttgttaGCTAGCTTTATTAATGTCAGCAGCCATGCCGTCCTACTCTGAATTGAGGAAAACCAACCACTTCTACTACTTCATCAAATTTACCTTGAATATCTACTCAATGCTCTTCTCGcTAATGGGTCTTTGTGTGCTGTGCGTGGGGGTGTATGCCGAAGTGGAGAGGCAGAAGAATCGAACCCTGGAGGGCCTTTTCCTGGCCCCTGCCGTGGTGCTGATACTGCTGGGCCTGGtgatgtttaccgtgtctgtGGTGGGCATGGTTGGATCCCTCCGGGACAACAAGACCCTGCTGCACATGTTCCTCTGTGTTCTCTGCGTGTTGCTGCTTCTCCAGGCAATCGGGCTCACCTTGGCTCTCATCTTTGAGAGCAAGACGTCTGCCTTGTTCCAGAGCAGTATACGAGAAGGAATTAAACACTACTACGATGATCTGGATTTCAAAAACATCTTGGACTATATGCAACAAAAGGTAGGGGAGGTTATGAACACTCTGTGTGGCTACAGGACTCTGGATAAAGAGCGTGCGACCCTGCATGAGCTGATCCATGTGCGAGGCTGCATCCATGCGGTCAACCTCTGGATGAGTGACAACATTGGAATAACCACTGCACTCTGCTGCGCCATCGGGCTGCCCCAGCTGCTGGGTATCGTCCTGAGCTGCATCTTCTGGAACCTGCTGGTGGACATGAGCGAGTCGGCCGACATGGTGGACTTCAAGCTGAAGAAGGCAGAGGTTGAGTACAGCGAGCTGGACCTGGCGGGCGCCGGCTGGTGTATGTGTCTTCCAAGGGACGGCGGCTACCTGCCCGTCCCCGCCGCCGAGCCTGACCTCGACCCCATCGATGTTCACCTGCTGAAGCTCAAGAAGCGGGCGCCTCGCACACACGCTCAGCTCCGAGAACTGCAGCAGTCCAGATCGGCCACTGGGCTGGACGAGGTAGACGCTAGCCGGAAGCAGAAAACGCCCTTTCATGCCTTTTGAGTTTTTgcctctttttattttatttcattatttttttttattttttttattcattgtaATCATTACATCTGTTGGAGTTGTGTTGCACTACGTAATGGTCAGCCATTGGATCAAGAAAGATTTGGTCAGCTAAAGGGATCAGAAGTACTTTGGCACTTTGttatgaatttgtttacaacaattgAAGGAACAACATGCAACATAggctttaaaaaacacttttcttttgTCGTGTTTGTGGTGGTTGTTATTCAAAGATTTATGGCATTATATGacatttgtatttaatttttttagccTTTGAAACTGAGCTATGTCTCATGTGCTAAAGCTTACCTCAGGCTGTTTTGAAAATAGCCCAGTAGTCAGAGGACAGTACTATTCGGTGTGTAAATTAATGGTAGCTTGAAAAGACGTTTTTCAGTGtctgagaaatagaaatagcaAAGTATGTCTTGCGTCTGTGACGGATGTATACAGTTTGTgtattatttccttttttttttttatcatgatttgaattttattttgtgCAATCGGTGTACATTGTAAGACTGGTAGTTGTGGAATAACATGGAATGCATgttttgtactgtatataaagtaagtttaaaaaagaaaagaaaaaaggaagtgtTGTTAGGCTCTCATCAGGGGGGGGGCTTTCAGTCTAttccattttaaaataaactttttattcAGTCTTTTAATGGAACACCTAAAGGGATTATCCAGACTACAAATCCAGTAAAAACCTACTCTATGACGTTTTTTTGTATCTGAGTTATGCACAGTTTTGAGCTTCCCCCTAGCTCCTGCCTTGTATCAGCACAGCTGTTGTCAATAAAGCTGAATTTGTCTACTGA

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU80828 lncRNA upstream 25634 8784653 ~ 8784920 (+) True G60223
TU80806 lncRNA upstream 78632 8731713 ~ 8731922 (+) True G60201
TU80794 lncRNA upstream 163105 8647221 ~ 8647449 (+) True G60189
XR_005639469.1 lncRNA upstream 212166 8597542 ~ 8598388 (+) True LOC120560290
TU80786 lncRNA upstream 219081 8591253 ~ 8591473 (+) True G60182
TU80844 lncRNA downstream 17300 8854273 ~ 8929828 (+) True G60232
TU80917 lncRNA downstream 128532 8965505 ~ 8989713 (+) True G60275
TU80913 lncRNA downstream 152845 8989818 ~ 8990590 (+) False G60273
TU80914 lncRNA downstream 152845 8989818 ~ 8991004 (+) True G60273
TU80912 lncRNA downstream 176378 9013351 ~ 9014895 (+) False vps37ba
XM_039803055.1 mRNA upstream 328376 8465171 ~ 8482178 (+) True LOC120560486
XM_039802098.1 mRNA upstream 375882 8432952 ~ 8434672 (+) False LOC120560007
XM_039802097.1 mRNA upstream 382809 8423712 ~ 8427745 (+) True LOC120560006
XM_039802096.1 mRNA upstream 382809 8423712 ~ 8427745 (+) False LOC120560006
XM_039803746.1 mRNA upstream 407985 8397481 ~ 8402569 (+) False LOC120560868
XM_039802727.1 mRNA downstream 24997 8861970 ~ 8907724 (+) True slc4a5a
XM_039802728.1 mRNA downstream 24997 8861970 ~ 8907724 (+) False slc4a5a
XM_039802730.1 mRNA downstream 85310 8922283 ~ 8933253 (+) True zgc:113436
XM_039803657.1 mRNA downstream 102856 8939829 ~ 8965106 (+) True LOC120560802
XM_039803062.1 mRNA downstream 135313 8972286 ~ 8989363 (+) True LOC120560490
unassigned_transcript_250 other upstream 356684 8453799 ~ 8453870 (+) True trnaw-cca_8
unassigned_transcript_249 other upstream 359010 8451473 ~ 8451544 (+) True trnaw-cca_7
unassigned_transcript_248 other upstream 361339 8449144 ~ 8449215 (+) True trnaw-cca_6
unassigned_transcript_247 other upstream 362538 8447945 ~ 8448016 (+) True trnaw-cca_5
unassigned_transcript_246 other upstream 363703 8446780 ~ 8446851 (+) True trnaw-cca_4
unassigned_transcript_251 other downstream 376269 9213242 ~ 9213313 (+) True trnaq-cug_4
TU81099 other downstream 1089977 9926950 ~ 9953239 (+) False LOC120560959
XR_005639542.1 other downstream 1090076 9927049 ~ 9981054 (+) True LOC120560959
XR_005639543.1 other downstream 1090076 9927049 ~ 9981054 (+) False LOC120560959
TU81096 other downstream 1090134 9927107 ~ 9980989 (+) False LOC120560959

Expression Profile