RNA id: XM_039803074.1


Basic Information

Item Value
RNA id XM_039803074.1
length 2853
RNA type mRNA
GC content 0.54
exon number 15
gene id osbp2b
representative False

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 19454248 ~ 19504544 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGCTTCAGCAAAGTGTAGGCATCACTTCTCGTCCTTCCTTTGGTGCCCATTCCGGCGTCATGTGAAAAGGGTTCATAGTGTTTCTCTCGCCCTAGACCGGGACCTCCTCCGTCTAGCTCATTCGTCAGTGTCGAGACGTCTACTCGCCCCGGTTGTCCCGGTGGGGTAGTGCCCCTGTCCCCGGTTCATCCCGCATCCTTCGGCGTGCGGCGGAGCGGAGGATGAGCGAGCAAGGGAAGGGCTCGGCACCCGCCTCTGCCGCGGCCGCGGCCCCAGGGTCGGATACTTACAAAGGCTGGCTTTTTAAATGGACCAACTATTTGAAAGGGTACCAGCGGCGATGGTTTGTCCTCAGCAATGGCCTGCTCTCATATTACAGGACGCAGGCAGAGATGGCCCATACGTGCCGTGGAACAATCAACTTGGCCACAGCACACATCGACACAGAGGACGCCTGCAATATTGTCCTGAGCAGTGGTGGCCGCACTTACCACCTGAAGGCTAGCACAGAAGTGGAGCGGCAGAGATGGGTGACAGCACTGGAGTTGGCCAAAGCTAAAGCCATCCGCATGATGAACGATCAGTCTGATGACTCGGGGGACGAGGAGCCTACATCCCAGTCGGACCGCAGCGAGATTCAGGGCACCCTGAAGATACTCGTCAGCAAGCTTGATGACCTCAGCACATGTAATGACCTGATCGCCAAGCACGGGGCAGCCCTGCAGCGTTCCCTGAGTGAGCTCGAGGGTCTGAAAGTCCCTGTGGAAGGAGGGGAGAAGATCAAGGCAGTCAATGAGCGAGCCACCCTCTTCCGCATCACTTCCAATGCTATGATCAATGCGTGTCGAGACTTCTTGGACCTAGCAGAGACTCACAGCAGGAGATGGCAGAGGGCGCTGCAGTATGAGCGAGAGCAGCGTATCCACCTAGAGGAGACCATTGAGCAGCTAGCCAAGCAGCATAACAGCCTGGAGCGAGCGTGGCGAGAAGCACCCACGCTTGTTTCCACCACACCCAGTGCCCCTACTGCCAACAAGGGAGGGAGTGAGAGGCTGCACAAAGAAGAGGCGAGTGATGAAGATGAGAATACTGAGTACTTTGATGCCATGGAGGATTCCCCTGAATTTATCACAGTGACTGCCACTGAGAACACACAGCACAGGCGATCTCAGAGTAATTTGAGCGGAGCGAGCGGAAGTCAGCCCAATCACTGGAACCAGGACGATCATATGTCTCCAAGCTGTAATGATGTGTTAGGGAAGGAGCTGCAGCCCCGCAGACAGAGACGGACTCATGTCCCAGACAAGCCCAACTACTCCCTCAATTTGtggagcatcatgaagaactgCATTGGCAAGGAGCTCTCCAAAATCCCCATGCCTGTTAACTTCAACGAGCCTCTGTCGATGCTACAGCGCCTCACAGAAGACCTGGAGTATCATGAGCTTCTGGACAAGGCAGCACGTTGCGACTCCTCCCTGGAGCAGATGTGCCTGGTCGCTGCCTTCTCCGTCTCGTCCTATTCCACCACGGTCCACCGAACAGCCAAGCCCTTCAACCCCCTCCTGGGCGAGACCTACGAGCTCGATCGACAAGAGGAGTTTGGCTACCGCTCGCTGTGTGAGCAGGTGAGCCATCACCCCCCTGCAGCTGCACATCATGTGATTTCCCAACGAGGCTGGACCCTGTGGCAGGAAATCACCATCGCCAGCAAGTTCCGTGGCAAATACCTCTCCATAATGCCTCTGGGTGCTATTCACCTACAGTTCCACTCCAGTGGGAACCACTATGTGTGGAGAAAGGTCACCTCCACAGTGCACAACATCATTGTGGGCAAGCTGTGGATTGACCAGTCAGGGGACATTGAGATTGTGAATCACAGGACAAAGGAGACCTGTCAACTCAAATTCTCTCCCTACAGTTATTTCTCCAGGGATGTTCCACGGAAGGTGACAGGTATGGTGGCAGACAGTGAAGGCCAGGCTCACTACATTCTCTCTGGTACGTGGGATGATAAAATTGAGAGTGCCAAGATCATTCAGAGCAGCCGAGGGGGCAGTGGATCAGAGGGCAAGCAGAAGACGGTCTATCAGACGTTGTCCCCCAAACTGCTGTGGAAGAAATACCCTCTCCCGGAGAACGCTGAAAACATGTACTATTTCTCAGCGCTGGCACTAACCCTGAACGAGCCGGAGGAAGGAGTGGGACTGACCGACAGCCGTCTGAGACCAGACCAGAAGCTGATGGAGGAAGGGCGATGGGATGAGGCAAACTCAGAAAAACAGAGGCTAGAGGAGAAACAAAGAGccgtgaggaggaggagggaagcgGAAGCCTCAGACGCTGTGGATGAAGAGTGTGATTATGACTCTGGTAAAGAATACGAAGGCTACCAGCCGTTGTGGTTTCACCAGAGGAGAGATTCAGTTACTGGAGAGACAAACTTTGTGTACAACGGAGGTTACTGGGAGGCGAAGGAGAGACAGGACTGGAGCATGTGTCCTAACATCTTCTAACCCAGGAACTCTGCCAGGATCACTCCTAACCTCATCGGACAGGGAACTGCTCTGCCTCTGGTCCTTCAGCAATGGGGCTTATCTGGCTTATGAGCACCATGTGGACCTTTTATTGAGCATGAGAATGTGTATGTTTCACACACTCTCGGATTACCTCCAAATGTACACTCTCACTCTGTTTTTACTATCGAGAAAAAGAAGGGGCGTTCCCTGAGTCTTTGACACTATACTGAAACAGCACTGAGATCATGTGTGGATGTGAGGTGGTGTTGGAGTTGTAACACCACACAATAAAGGCACCTGCACACTCCTGAAATCAGGTGCTTGATAAATCTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005639511.1 lncRNA upstream 300843 19151533 ~ 19153584 (+) True LOC120560789
TU84161 lncRNA upstream 367565 19084934 ~ 19086862 (+) True G62836
TU84159 lncRNA upstream 367565 19085914 ~ 19086862 (+) False G62836
TU84163 lncRNA upstream 372773 19081080 ~ 19081654 (+) False tmem119a
TU84099 lncRNA upstream 471804 18966083 ~ 18982623 (+) True G62796
TU84387 lncRNA downstream 44866 19549410 ~ 19554906 (+) True G63005
TU84391 lncRNA downstream 50839 19555383 ~ 19562350 (+) True G63007
TU84393 lncRNA downstream 50839 19555383 ~ 19562350 (+) False G63007
TU84401 lncRNA downstream 71017 19575561 ~ 19581840 (+) False G63015
TU84402 lncRNA downstream 71017 19575561 ~ 19633642 (+) True G63015
XM_039803079.1 mRNA upstream 5481 19430401 ~ 19448946 (+) True rasl10a
XM_039803143.1 mRNA upstream 26710 19400169 ~ 19427717 (+) False ap1b1
XM_039802953.1 mRNA downstream 13632 19518176 ~ 19532323 (+) True si:ch211-102c2.8
XM_039802955.1 mRNA downstream 31758 19536302 ~ 19540034 (+) True tcn2
XM_039802958.1 mRNA downstream 35706 19540250 ~ 19544265 (+) False dguok
XM_039802956.1 mRNA downstream 35982 19540526 ~ 19544265 (+) True dguok
XM_039802957.1 mRNA downstream 35982 19540526 ~ 19544265 (+) False dguok
TU84360 other upstream 5477 19434907 ~ 19448950 (+) False rasl10a
XR_005639481.1 other upstream 773266 18661157 ~ 18681161 (+) False acacb
TU83744 other upstream 1034837 18416128 ~ 18419590 (+) False tbx5b
TU83742 other upstream 1038421 18407387 ~ 18416006 (+) False tbx5b
TU83701 other upstream 1123197 18330705 ~ 18331230 (+) True G62513
XR_005639482.1 other downstream 973268 20477812 ~ 20488838 (+) False wdr31
XR_005639483.1 other downstream 973268 20477812 ~ 20488838 (+) False wdr31
TU85087 other downstream 1171873 20676417 ~ 20677916 (+) True G63480
XR_005639510.1 other downstream 2084332 21588876 ~ 21598799 (+) False LOC120560787
TU85622 other downstream 3425355 22929899 ~ 22930205 (+) True G63905