RNA id: XM_039803082.1


Basic Information

Item Value
RNA id XM_039803082.1
length 3089
RNA type mRNA
GC content 0.58
exon number 17
gene id mtmr3
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 8055365 ~ 8078168 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

agccgtcagacagcgttacagcacgcacggagatgagaaggGCTGCTCCAGGCCGGACTCTCTTGTCGGGTGACCCGCACTCCTTCCCAGGGGCCATGgaGGAGGAAGGGCAGCAGAGCTTGGAATGTATCCAGGCCAATCAAATCTTCCCCAAGAAGTCCCCCGTTCTTGAGGAGGAAAACATGCAGGTGCCCTTTCCTGAGCTGCATGGCGAGTTCACAGAGTATGTGGGGAGAGCAGAGGATGCCATCATCGCAATATCTAACTACCGCCTACACATCAAGTTCAAAGAGTCCGTTGTCAACAGTTGTTGTTGTGAGGTGTCAGTTCCTCTTCAGCTCATAGAGAACTCGGAGTGTCGGGATATGTTCCAGCTTCATGTCACCTGCAAGGACTGTAAAGTCGTCAGGTGCCAGTTCTCCACCTTTGAGCAGTGTCAGGAATGGCTAAAACGCCTGAACGCAGTAGTGCGCCCTCCCTCCCGCCTGGAGGACCTCTTCTCCTTCGCCTTCCACGCCTGGTGCATGGAGGTATATGCCGGCGAGAAGGAGCAGCACGGCGAGCTATGCAGACCAGGCGAACACGTGACCTCCTGGTTCAAGAACGAGGTGGAGAGGATGTGCTTTGACACTCAAAACGCCTGGAGGATATCGGACATCAACAGCAAGTTCAGGCTTTGCCCCAGCTATCCCCAGCAGCTCCTGGTGCCAGCCTGGATCACTGACAAGGAGCTGGAAAATGTGGCAGCCTTCCGCTCCTGGAAGAGGTTTCCTGCTGTGGTTTATAGGCACCAGACCACGGGAGCTGTGATTGCCCGCTGCGGCCAGCCAGAGGTCAGCTGGTGGGGCTGGAGGAACGCAGATGATGAGCACCTGGTCCAGTCCATCGCCAAGGCCTGCGCCGTGGACAGCAGCTCCCGCAAACACCTTTCCAACGGCAGCTACACCAACGGCAACGACCTGCCTGATACTGACTTTGaaTCCTCCATGACCAACAGCGCAGAGGTGGAGACGTTGGCTACCCAGCCCCACAAGTTACTGATTCTGGATGCCAGGTCCTACGCTGCTGCCGTAGCTAACAGGGCCAAGGGGGGAGGCTGTGAATGCCCAGAGTACTATCCCAACTGTGAGGTGGTGTTTATGGGCATGGCCAACATCCACTCCATCCGCAAGAGTTTCCAGTCTCTGCGTTTCCTCTGCACTCAGATGCCTGATCCGGCCAACTGGCTGTCTGCACTGGAGAGCACCAAGTGGCTGCAGCACCTGTCCCTGCTGCTGAAGGCGGCGCTGCTGGTGGTGAACGCTGTGGACCGAGACCACAGGCCTGTCCTGGTGCACTGCTCTGACGGCTGGGACCGCACACCTCAGATCGTAGCTTTGTCCAAGCTGCTGCTGGACCCTTACTACCGCACTGTGGAGGGCTTCCAGGTTTTGGTGGAGACTGATTGGCTGGACTTCGGCCATAAGTTTGCCGACCGCTGCGGCCATGGAGAAAACTCTGAGGACCTGAACGAGCGCTGCCCCGTCTTCCTGCAGTGGCTGGACTGTGTTCACCAGCTGCAGAGGCAGTTCCCATGCTCCTTTGAGTTTAACGAGGCCTTCCTGgtGAAACTGGTGCAGCACACCTACTCCTGTCTTTTCGGCACCTTCCTGTGTAACAGCGGCAAGGAGAGGGAGGACCGTCACGTTCAGGAGAGGACCTGCTCAGTCTGGTCACTGCTGAGACCGGCCAACCGCACTCTGAGGAACATGCTGTACTCCACACACTCCGAGATAGTTCTTCACCCAGTGTGTCATGTACGCAACCTGATGCTGTGGACGGCTGTCTACCTGCCCAGTtcctcccccaccaccccctCCGATGAATCCTGCGCCCCCTACCCTGTGCCGGGTTGCAACCCTGAGGACGCGCCCTTGGGCAGACGTACGAAGACTCGCTCCTTCGACAACTTGCCCAGTGCATGTGAGCTGGGAAGCTCGCTGGCTCCTAACCGCCGCTCCAGTGACCCGAGTCTCAATGAGAAGTGGCAGGACCACCGGCGCTCTCTGGAGCTCAACATGGCAGTGGGGCCTGAGGGAGGGGGAAACCAGGATCAGGAGGTGCGGCCTAACGGAGTGGGGCCTTACCCAGACGGAGTGGACTCTGAGCTGGAAGACAGCCCACAGCCCCAGGGCTCGCATGCTGAGCTCGGACAGGAAGCCTCTGCGAGCACCGCTGAAACCGGGGCGGACGCTGAGAAGGCGGAGCTCTCTGTGGCGGTGGGCGTGGCTGAGGGCCAGATGGAGAACATTCTTAAGGAAGCCACTAAGGAGGAGGCGGGAGCAGATGTTCAGAGAGAGGGAAGTGCTGCTGTCACACATGTCATCAACACTGTTGACACAGAATTCCAGAAGGAAGCAAAAGTTCAAGAGGATGACGAGTGTGCTAAGGTCAATGGGACTGAGATGCAGAGAGAAGCGTTTACCAATGGTCACCATCTAGAAAATGGCGTAATGGAGGCAGAGGAGGTTGATGAGTCTCCCCCTCTGCCCACACAGAAGGCAGAGGAGCTGGATCAACAGGCAGCTGAGGTGACTCAGTCACCAGAGGACCTGGTGAAGCAGGACGCAGAGAACTGTTCTGTACCAGAGGAGCTTGCACATGGACCCAGCGAGTCCAGCTCAGGTGAGCCCGAGCAGCCTGCAGCCCATAGAACTATAACAAACGGCTTTGTGGACAGGTCACCTGAAGAGCCAGGAGTGGATGAGGAGACCAGCCCTGACTCTGAATCTGACAACGGTGTCTCCGAGCCAGTGGAGCAGGGGGATAAGAGGGCCTCCCTGATGGAAAGCTCCACAGAGACTTTAACTGAAGAAGCCTGTAGCAGGTTGGAGCTACCAGCACAGCCGCCGGTTTGTCCCAGTCATCAGCCCTGCAGTGATGGCAGGAACCAACCGCCCTGCTCCAGGAAGGAGAAAGGACTGGAGACAGGCGAACAAGgctttatcagaactttaaacGGGGGCAGCAAGCGGCCCTCTGTCAGTGCCTTTCAGTCTGTGAGTGCTGACCTCAACAGGGAAGGGCTTTGTAACGGCGAGAGGCCCTGA

Function

GO: NA

KEGG:

id description
K18082 MTMR3_4, ZFYVE10_11; myotubularin-related protein 3/4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU80483 lncRNA upstream 130809 7920777 ~ 7924556 (+) True G59931
TU80492 lncRNA upstream 176994 7874814 ~ 7878371 (+) False atp2a2a
TU80491 lncRNA upstream 176994 7877168 ~ 7878371 (+) False atp2a2a
TU80365 lncRNA upstream 408216 7646705 ~ 7647149 (+) True G59839
TU80363 lncRNA upstream 419311 7635595 ~ 7636054 (+) True G59837
TU80665 lncRNA downstream 148724 8226892 ~ 8227173 (+) True G60082
TU80669 lncRNA downstream 153836 8232004 ~ 8236195 (+) False G60084
TU80667 lncRNA downstream 157391 8235559 ~ 8236527 (+) False G60084
TU80668 lncRNA downstream 157391 8235559 ~ 8238788 (+) True G60084
TU80663 lncRNA downstream 224090 8302258 ~ 8313113 (+) True G60080
XM_039803965.1 mRNA upstream 4025 7947252 ~ 8051340 (+) True cux2b
XM_039803966.1 mRNA upstream 4025 7948431 ~ 8051340 (+) False cux2b
XM_039803276.1 mRNA upstream 141845 7904789 ~ 7913520 (+) True rad9b
XM_039803274.1 mRNA upstream 150771 7898563 ~ 7904594 (+) True LOC120560606
XM_039803275.1 mRNA upstream 154841 7888678 ~ 7900524 (+) True LOC120560607
XM_039803083.1 mRNA downstream 134 8078302 ~ 8083374 (+) True LOC120560501
XM_039803058.1 mRNA downstream 94392 8172560 ~ 8204063 (+) True bicdl1
XM_039803057.1 mRNA downstream 94853 8173021 ~ 8204186 (+) False bicdl1
XM_039803747.1 mRNA downstream 253217 8331385 ~ 8402569 (+) True LOC120560868
XM_039803745.1 mRNA downstream 309654 8387822 ~ 8389118 (+) True LOC120560867
TU80548 other upstream 20004 8028192 ~ 8035361 (+) False cux2b
XR_005639609.1 other upstream 356114 7699133 ~ 7699251 (+) True LOC120561497
XR_005639608.1 other upstream 357320 7697927 ~ 7698045 (+) True LOC120561496
XR_005639610.1 other upstream 362156 7693091 ~ 7693209 (+) True LOC120561498
XR_005639604.1 other upstream 364573 7690674 ~ 7690792 (+) True LOC120561492
XR_005639399.1 other downstream 353369 8431537 ~ 8434672 (+) False LOC120560007
XR_005639400.1 other downstream 353369 8431537 ~ 8434666 (+) True LOC120560007
unassigned_transcript_244 other downstream 366286 8444454 ~ 8444525 (+) True trnaw-cca_2
unassigned_transcript_245 other downstream 367450 8445618 ~ 8445689 (+) True trnaw-cca_3
unassigned_transcript_246 other downstream 368612 8446780 ~ 8446851 (+) True trnaw-cca_4

Expression Profile