RNA id: XR_005639489.1


Basic Information

Item Value
RNA id XR_005639489.1
length 1846
RNA type transcript
GC content 0.52
exon number 12
gene id fancg
representative False

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 18297593 ~ 18303862 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ACTAAACTCCCACTGatgtttacttcctgtgttagCTCCGCTCTTTGACAAACGAGGGGAAGTTTAAACAAAACACCAACAACTTTTCAGAAAACGGCGATGTCATGTCTGATCAAATGTGTCAACCGCTTTCTTTATTATATAGATGGATCCAGGAAAACAACGAGCTGGTAGACAAATGCAAGCAGCAAGGAGGAGGAGATGCCTTGAGCCCGGACCAGAACAAGACCCATCTGAGATGGTGTTCCTCTGAGTTTCACAAACTTTTAAAGAAAATCCAAGGTATCCCTCCTCTTGCAGATTATTTACAGTTGGAGCTGACAGTGGTGTACAATGCGTGTTTGTGCTCCACTGCTCAGTCTCAATTTTCAGAAGCTGAGCTGCTCCTCACACAAGCCACAGAGAGAGTTCTACAGATGACAGGAGATGCCCCCGTTGCTTCAGACCCTCCTGTGTTTTGGAGAACAGTTCTCAAATCAGTGGGAGACACAGCTTTGAATCCCTGTGTACTGTACCTTCTCTGTCTGCAGTGGGCAATATGGCTGTCCACCTGCCAGCTGAAAACTATACAGGAATGTCAGGATGAGCTGTTCTCTGTGTTTGAGACACTCTCTACCGGAGTTTGGGATGAAGGGAGGAGCGAGCTAAGGGGAAAGTCCTCTGACATTCCACTACTGGTGATGGACCCAAGAAGGCTTTTTGAATTATTGCAGATCTGCACTATTATTGCCCAAGgtgcagaaagtttgagtgaggGCCGGAGTTCAGAAGCGCTGTCTGGTCTGCAGACAGCTTCCTCCCTGCCTGCTCCCAGAACTCTAATAGCATACACGCACCTCCTCTCAGGCTCTTGCCTTGCCCATATGAGCCGCCCTCAGATGGCATTGCAGTGTTACAGGAAGGCACTGGAAACAGACTCccgatgtgtgtgtgctctgtacCAGAGCATGCTCATTTACAGACAGCTGGGCAACACACAGGCTGAGATCCAAGCTCTTTGTTTGCTGCATTCAACTTTGATGTTGCCCTTTGCCACAGAGCCTGCTCTGGCTGGTACTCGCCTCCTCTCCCCGTCCTTACTGCTGCGCAGCCAATCCCTGAGCAGCCTGCTCTCAGTTCCCTCTGCCCTCTCTGTTCTTCACAATCTGGCCCTGAAGTGTGTGCACCATGAGAGGGTGTCAGATGGTGTGGAATATTATTTGGACCTGCTGGCTGTTCTTCACTCAGAAGATCAACATGGAGTGCATGCTGAGGGCCCTCCCCTCCCTAGCTTGCCCGAGCTTTACCTGCAGGCTGGCGCTGCCTTGCTCATGGCCCGACGGCCCGCTGATTGCATGGCGCTGTGcgatgaagtcatcactacgaCACTGGAGCTGCTGCCAGAGAAGGTGGTGTTGGAAGAGCCAGAGGAGAAGTGTGAGGCTGAGACCAGGCCTCTGTGTGCAGAGGGTGACGATAGGGTGGCGATGCTGCTCTGGGCGGGGGCTGCCTACCTCCTCCAGGGTCACTGCCACACTCACCTGAAGGACTGGAAACAAGCAGTGACTCACTACACAAGGTTTCCAACCACAGATTCCCAGTACAGATATGATTGGCAAGCAGGGAACAGATCTGTGTATCCTCCAGAGGCTGAAGGGGCTTTCACTCGCTGGTAGGGGCATCAGCTTCACCCAGACTGATCAACTGAGAGAGGCACTGAGAGACTTGCAGCTCAGCATGCAGGCATTCCCAGAGTGCACGAGTGCAGGGCTGTGGTGTGGTGAGGTGCTGTGGAGACTTGGCAGGAGGTGGGAGGCAGCAGCTTGTTGGGAAAAGACCTGGAGCTTCACCCCGCAATTCTCAGTGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU83626 lncRNA downstream 63215 18234605 ~ 18235686 (-) True G62452
TU83570 lncRNA downstream 242758 18055251 ~ 18056143 (-) True G62399
TU83567 lncRNA downstream 243050 18055251 ~ 18055851 (-) False G62399
TU83475 lncRNA downstream 365433 17931742 ~ 17933468 (-) True G62339
TU83469 lncRNA downstream 371946 17914926 ~ 17926955 (-) True G62333
TU83677 lncRNA upstream 295 18304157 ~ 18304356 (-) True G62493
TU83781 lncRNA upstream 25741 18329603 ~ 18329892 (-) True G62567
TU83782 lncRNA upstream 27522 18331384 ~ 18332396 (-) True G62568
TU83785 lncRNA upstream 51380 18355242 ~ 18357753 (-) True G62571
TU83803 lncRNA upstream 90974 18394836 ~ 18397946 (-) True G62586
XM_039803085.1 mRNA downstream 2197 18287289 ~ 18296704 (-) True LOC120560503
XM_039802613.1 mRNA downstream 115996 18173443 ~ 18182905 (-) True rgmb
XM_039802611.1 mRNA downstream 128143 18163106 ~ 18170758 (-) True erap2
XM_039802610.1 mRNA downstream 136574 18147120 ~ 18162327 (-) True LOC120560293
XM_039803154.1 mRNA downstream 233504 18059560 ~ 18065397 (-) True cdk7
XM_039803090.1 mRNA upstream 9513 18313375 ~ 18321149 (-) True thoc5
XM_039803093.1 mRNA upstream 17692 18321554 ~ 18326918 (-) False tfip11
XM_039803091.1 mRNA upstream 17692 18321554 ~ 18326918 (-) True tfip11
XM_039803097.1 mRNA upstream 29232 18333094 ~ 18344523 (-) False si:ch211-166a6.5
XM_039803096.1 mRNA upstream 29232 18333094 ~ 18344523 (-) True si:ch211-166a6.5
TU83669 other downstream 2223 18293256 ~ 18296678 (-) False LOC120560503
unassigned_transcript_262 other downstream 339017 17959813 ~ 17959884 (-) True trnaq-cug_5
XR_005639516.1 other downstream 403004 17859355 ~ 17895897 (-) False pip5k1bb
XR_005639575.1 other downstream 693781 17598088 ~ 17605120 (-) False LOC120561236
TU83796 other upstream 73740 18377602 ~ 18380502 (-) True G62580
TU83799 other upstream 79143 18383005 ~ 18386269 (-) True G62582
TU83818 other upstream 136047 18439909 ~ 18442825 (-) False iqcd
TU83834 other upstream 186010 18489872 ~ 18492390 (-) False zgc:158398
TU83852 other upstream 206293 18510155 ~ 18512261 (-) True G62626

Expression Profile