RNA id: XM_039803088.1


Basic Information

Item Value
RNA id XM_039803088.1
length 1795
RNA type mRNA
GC content 0.46
exon number 9
gene id akr1a1a
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 18282370 ~ 18287282 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CAGCTGATCACTGCTCCGTCTACCAGAGCGATCACGGATCATCAGGATTGAAACATGAGTGCCTTCGTGACTCTCTCAACAGGCCAGAGGATGCCCGTGGTCGGACTCGGCACATGGAAGAGCGGCCCAGGACAGGTGAAGCAGGCAGTGCTGGCAGCTTTAGACTGTGGCTACAGACACATTGACTGTGCTGCAGCATACAGCAATGAACAGGAGGTGGGAGAGGCTCTGTCTACCAGGCTCGGCCCAGGGAAGGCTCTGCGTCGCGAGGAGGTGTTTGTAACATCCAAACTGTGGAACACCAAACATGACCCGGAGGATGTTGAGGAAGCGTGCAGGACCAGTCTGGCCCACCTGGGTCTCTCCTATTTGGACCTGTACCTTATGCACTGGCCCATGGCATTTCAGCGGGGGAAGGAGCTGATGCCTCGACGAGAAGATGGAAGTGTTTGTTACTCTGACACACACTACAGAGATACTTGGGCAGCCATGGAGAGCCTAGTGGACAAAGGTCTGGTCAAAGCTATAGGACTGTCCAACTTCAATGCCAGGCAgactgatgacatcatcagcatGGCCAGACACACACCTGTGGTTAACCAGGTGGAATGCCATCCTTATTTGTCTCAAACAGATCTCCTGTCTCACTGTCGGTCCGTGGCGGTTTGTGTGACAGCCTACAGTCCTCTGGGCAGCGGGGACAGACCCTGGGCCTCTCCTGATGAACCAAGTCTGCTACAGGATCCTCAACTGGGAGCCATCGCCCAGAGATACCAGAAAACACCTGCCCAGCTCATTCTCAGGTGGCATGTTCAGAGGGGTGTCGTGTGTATTCCTAAAAGTGTGACGCCCGCAAGGATCCGGCAGAACTTGCAGGTGTTTGACTTTTCTCTGTCAGAAGACGACATGAAGCTGATCGAATCCTTCAACCGCAACGAGCGCTTCATTGTCCCAGCAGTCAAGagagaTGGCAAGAGTGTGTGGAGAGATGCAGAACATCCTCATTTCCCCTTCAATGATCCTTACTGAGTCTACACACAAAGAATGCAATACGGTCTTTAAAATTGACTGTCACACACACTGAAGAAACCAAGTATCTAAACTGAACTCAAATATGATCAAATGTATTTTCCCTTTGGgatgaatattaatatttaaatgacTTAATTTGTAAAAGAAAGTGCTTGAATCATGTTTTCCCAATCACTTCTTTAGTGTGATTATAGTGAAGAATAAAGTGACTGCCACTGCCAGAGTGACACTATGTGGTCAGTATAAGAACTGCCCAATGACCATAGCTTTGATCAACTGCATATTTTACAgtttagaccaggggtcaccaacctttttgaaacaGAGCTACTTCGTAaatattgagtcatacgaagggctaccagtttgatacactcttctgaaataacaaatttgctctgtttgcctttagttatacaTGATTCTTAACGATACTCCTCTATGTGAAGAAACTGATCATGTTATAATTATCAATCAATAATTatcaatgacttaacaaggtgggaaacggATATCaaaattcaattttcatttttagaacaggcctgagggctactcgtggtccttgggggctacctggtgcccgcgggcaccgtgttggtgaccccggTTTAGACTCTTTGAAGAGTAAATCACTGAACAGCAGCACTGCTCGGAGATTAAGCTTTTTATCCCTCTTTCGTGTCTGTCTCTACTGTAAAAACTatcaaatgtattattaaaaatgtacatgaactataaataaaagaagTTTCAAAACGGA

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016491 oxidoreductase activity molecular_function

KEGG:

id description
K00011 AKR1B; aldehyde reductase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU83580 lncRNA upstream 153301 18128826 ~ 18129069 (+) False setbp1
TU83579 lncRNA upstream 154625 18127536 ~ 18127745 (+) True G62406
TU83529 lncRNA upstream 226221 18054799 ~ 18056149 (+) True G62372
TU83519 lncRNA upstream 264922 18015405 ~ 18017448 (+) False thbs4a
TU83482 lncRNA upstream 341524 17939027 ~ 17940846 (+) True G62344
TU83666 lncRNA downstream 5978 18293260 ~ 18296903 (+) False G62484
TU83667 lncRNA downstream 5978 18293260 ~ 18295306 (+) True G62484
TU83688 lncRNA downstream 25929 18313211 ~ 18314777 (+) True G62502
TU83694 lncRNA downstream 33361 18320643 ~ 18321158 (+) True G62508
TU83741 lncRNA downstream 77998 18365280 ~ 18388485 (+) True G62533
XM_039804346.1 mRNA upstream 2258 18270719 ~ 18280112 (+) False dnajb5
XM_039804345.1 mRNA upstream 2258 18270720 ~ 18280112 (+) True dnajb5
XM_039803282.1 mRNA upstream 13789 18245501 ~ 18268581 (+) True epg5
XM_039802123.1 mRNA upstream 37597 18239308 ~ 18244773 (+) True LOC120560024
XM_039804525.1 mRNA upstream 44371 18232728 ~ 18237999 (+) True riok2
XM_039803089.1 mRNA downstream 19616 18306898 ~ 18311633 (+) True LOC120560506
XM_039803094.1 mRNA downstream 39682 18326964 ~ 18328537 (+) True srrd
XM_039803095.1 mRNA downstream 39682 18326964 ~ 18328537 (+) False srrd
XM_039803104.1 mRNA downstream 58272 18345554 ~ 18357632 (+) False ddhd2
XM_039803105.1 mRNA downstream 58280 18345562 ~ 18357632 (+) False ddhd2
XR_005639579.1 other upstream 273052 17998686 ~ 18009318 (+) False cmya5
TU83072 other upstream 1748221 16533329 ~ 16534149 (+) False LOC120560897
TU83070 other upstream 1806465 16468367 ~ 16475905 (+) False LOC120560890
XR_005639530.1 other upstream 1806473 16468323 ~ 16475897 (+) False LOC120560890
TU82943 other upstream 2505229 15763114 ~ 15777141 (+) True mctp1a
TU83701 other downstream 43423 18330705 ~ 18331230 (+) True G62513
TU83742 other downstream 120105 18407387 ~ 18416006 (+) False tbx5b
TU83744 other downstream 128846 18416128 ~ 18419590 (+) False tbx5b
XR_005639481.1 other downstream 373875 18661157 ~ 18681161 (+) False acacb
TU84360 other downstream 1147625 19434907 ~ 19448950 (+) False rasl10a

Expression Profile