RNA id: XM_039803089.1


Basic Information

Item Value
RNA id XM_039803089.1
length 3026
RNA type mRNA
GC content 0.52
exon number 4
gene id LOC120560506
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 18306898 ~ 18311633 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCTGCTGCAGTCAGTTCTCATCCGGCCCAGCCAACATGAGTTACACGGTAGAGCACCATCTCTTCGGCCCGACCTCGTACCGCAAGGCTCGGCCTGCCTCCGTGTCCTCCAGCGGCTTTCACTCCCAGCGCCGCCGCCTCACCTACAGCCAGCCATCCTCCGTGGACAGCTTGGAGACCTTCAACGGCGACATGACACGGAGGAACGAGAAGGAGATTCTGCAGACCCTGAACGACCGGTTCGCCGGCTACATCGACAAGGTGCGCAACCTTGAGATGCACAACCGCAACTTGGAGGCGGAAGCGGCAGCTCTGCGGCAGAGCCAGGCCGGGCGCACCTCGGTTGGGGAGCACTACGAACGAGAGCTGGGCGACCTGAAGGGTCTCCTGCAGCAGCTGACCGGGGAGAAGGCCCGCGCAGCTCTGGAGCACGATCACCTGGAGGAGGACATCCAGCACCTACGGGCCAGACTGGAGGATGAGGCGCGGAACCGGGATGAGTTGGAGGCTGCCGCCCGCGCCATGAAAAAGTATGCTGAGGAGTGCCGGCTGGCGCGTATGGAGCTGGACAAGAAGCTCCGCTCCCTGGAGGAAGAGGCCGTTTTCCTGAAGAAGAACCACGAGGAAGAAGTGGCTGAACTCCTCGATCAGATTCATGGCGCGCAGGTAAGCTTCGACATGCGGGACGCGCTCAAGGCGGACGTCACCGGCGCCCTGCGAGAGATCCGTGCGCAGCTGGACGGTCACGCATCCAAGAGCTCAACGCACGCGGAGGAATGGTTCAAAGTGCGTATGGAGCATCTGTCTGAAGCTGCTAAGTCCAACCAGGATGCAATTCGTGGAAGCCAGGACGAGATCGCAGACTACCGCCGTCAGCTCCAGAGCCGCACCATCGAGCTGGAGACTCTTCGGGGAACCAAGGACTCACTTGAGAGGCAGCGTATGGAGAGTGAAGACAGACACCACGATGAACTCAACTCACTACAGGAGGCCATCAATCAGCTGGACAATGAGCTGAAATCCACCAAATGGGAGATGGCCAGCCAGCTGAAAGAATATCAGGAGCTGCTGAATGTGAAGATGGCTTTAGATATTGAGATTGCTGCTTATAGGAAGTTACTGGAAGGAGAGGAGAATCGCTTTGTGTCAGGAGGAGGCCCGTACTCTTACCTGGAGAGCAGAATCTCTTCCCACTTGAAAGTGAAAGGAGAGGAGATCTCAGATACCGTCATCGTGGAGGAACAGACCGATGAGACCCAGGTGACTGAGGTGACAGAGGAGgcagatgaggaggaagaggagggagagaaagaagacgATGAGGAAACcaaagaagaggagggagaaggtGAGGAAGGAGAAGataaggaggaggaaggagagggcgaagaagaaaaggaggaggaagcaaagggagaggaggagaaggatgaggaggagaaggatgaggagaagggagaggaagaggaggcaggtgaagaagaagagaagtcCAAATCTCCAGAAAAGGCTGCATCCCCTGAGCCTAAATCTCCTGCGGTCAAATCCCCAGAATCTAAATCCCCACAAAAATCCCCAGAATCTAAATCACCACCAGCCAAATCCCCGATGCCCAAATCACCCGCTAAGTCGCCTGCAGGAGATGATTCAAAGTCACTTGTTTCACCCAAATCTCCTGAATCTAAATCTCCTCGTCCCAAGACCCCTGAACCACAGTCTCCAGAAAAAGAGAAGGCCAAGCCTGCCACCGCCAAAGACACCCcgaaagaggagaaaaaagaggAGAAGCCTGTCaaggaggaaaagaaggagaaagaacAACCCGTGAAGGAAGAGAAGAAGCAAGAGCCCAAGGAGACAGAGCCAGAGAAGGCAGACAAACCTGATTCGAAGAAAGAAAGCAAGGCAGATGAAGCTACAAAGACAGATGGCGCTTCGAAACCTGCTGCTCCCAGCAAACCCGCAGAGGATAAACCTGCCCCCAAGTCTGAGCCTAAAGAGAGTGCTCCCCCCGCCAAGGAGGAGAAACCCTCGACTCCTAAATCAGAGAAGGCCGAGCCCGAGGCAAAGCCTGCCCCTAAAGCAGAGCCCGAGAAAACAGAGGAGAAGAAGCCAGAGGAGAAGAAGCCAGAGGAGAAGAAGCCAGAGGAGAAGAAGCCAGAGGAGAAGAAGCCAGAGGAGAAGTCCGCACCTAAAGCCGAACCCCAGAAAACAGAGAGCAAGAAAGACGAGAAGAAGCCAGAGGCGGAAAAGGAGACTAGTAAAGAAGAGAGTAAAGAGgtgaaggatggagggaaggcGGAGAAATCTTCGGGCACCGAGTCAAAGGAGAGCAAGGAGGAGAAGGCCAAGAAGTAAGACGGATAACCTGTGATTCAAGGCACGACGAGAGGAGGTGGAGATGCCAAAGAACTATGAAGGAAGGCAGGGTAAAGAGCAGGAGAAAGGGACTGGATGCACCCAGCTGTTCAGATGGGCGCTTTAATGTCCAAAGCAAAGCAGGTGATGCTATGTAAGCAATAGTGatttctgtagcaaataacccCCTGCTCCCCAAGTATGGCCATTACATACCCCTGATGCTTCTGATGTATGACTGTAGTGAATGCAGAATGCTCTAAACTCTTTATCTGAATGTGATAACTGCCCTTAATAAATAACAAGTGCATTTAAACTGAATCCCACTGACGGGGACCGCAGGGGCCTGCTGTACCTACACAAGCCTTCAAGGGTAGATATTTCAAAACAATGTCAAGCTAAAGATTGTGACAGATattgaatataaaaacatatatttaagGATATACAAAtgtctataatatatatatatatattatatttacagATACATCAGTAAGAAAGACTTGAATTTTGCTTGTTTAATGCAGCTTCTCCTGATGGTGAACTGCCCTGTCTCACTTTTTTGGTCTGCAATGCTAGGACAATGATGACTATGTGTTATGTATAAACTGCTGAGAATATGCAATATAAAACAGATAAATAAAGAATGAAAAATCAAACACAAAA

Function

GO: NA

KEGG:

id description
K04574 NEFH, NF-H; neurofilament heavy polypeptide

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU83666 lncRNA upstream 9995 18293260 ~ 18296903 (+) False G62484
TU83667 lncRNA upstream 11592 18293260 ~ 18295306 (+) True G62484
TU83580 lncRNA upstream 177829 18128826 ~ 18129069 (+) False setbp1
TU83579 lncRNA upstream 179153 18127536 ~ 18127745 (+) True G62406
TU83529 lncRNA upstream 250749 18054799 ~ 18056149 (+) True G62372
TU83688 lncRNA downstream 1578 18313211 ~ 18314777 (+) True G62502
TU83694 lncRNA downstream 9010 18320643 ~ 18321158 (+) True G62508
TU83741 lncRNA downstream 53647 18365280 ~ 18388485 (+) True G62533
TU83734 lncRNA downstream 129729 18441362 ~ 18474731 (+) False tpcn1
TU83749 lncRNA downstream 145865 18457498 ~ 18459249 (+) True G62540
XM_039803088.1 mRNA upstream 19616 18282370 ~ 18287282 (+) True akr1a1a
XM_039804346.1 mRNA upstream 26786 18270719 ~ 18280112 (+) False dnajb5
XM_039804345.1 mRNA upstream 26786 18270720 ~ 18280112 (+) True dnajb5
XM_039803282.1 mRNA upstream 38317 18245501 ~ 18268581 (+) True epg5
XM_039802123.1 mRNA upstream 62125 18239308 ~ 18244773 (+) True LOC120560024
XM_039803094.1 mRNA downstream 15331 18326964 ~ 18328537 (+) True srrd
XM_039803095.1 mRNA downstream 15331 18326964 ~ 18328537 (+) False srrd
XM_039803104.1 mRNA downstream 33921 18345554 ~ 18357632 (+) False ddhd2
XM_039803105.1 mRNA downstream 33929 18345562 ~ 18357632 (+) False ddhd2
XM_039803107.1 mRNA downstream 33943 18345576 ~ 18357632 (+) False ddhd2
XR_005639579.1 other upstream 297580 17998686 ~ 18009318 (+) False cmya5
TU83072 other upstream 1772749 16533329 ~ 16534149 (+) False LOC120560897
TU83070 other upstream 1830993 16468367 ~ 16475905 (+) False LOC120560890
XR_005639530.1 other upstream 1831001 16468323 ~ 16475897 (+) False LOC120560890
TU82943 other upstream 2529757 15763114 ~ 15777141 (+) True mctp1a
TU83701 other downstream 19072 18330705 ~ 18331230 (+) True G62513
TU83742 other downstream 95754 18407387 ~ 18416006 (+) False tbx5b
TU83744 other downstream 104495 18416128 ~ 18419590 (+) False tbx5b
XR_005639481.1 other downstream 349524 18661157 ~ 18681161 (+) False acacb
TU84360 other downstream 1123274 19434907 ~ 19448950 (+) False rasl10a

Expression Profile