RNA id: XM_039803090.1


Basic Information

Item Value
RNA id XM_039803090.1
length 2339
RNA type mRNA
GC content 0.51
exon number 20
gene id thoc5
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 18313375 ~ 18321149 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ttggcACAGCAGAGCTTCCGTTCGTCTTCGGCGCTTTGCGGTTGAGGGTTAAACAAAGTATCCTGTGCATGTGCATTTGCGCACGATTTAAGGATTCCAGGTGTTTTTGTGTACCAAGAAGccaccccccccccccatgtcgTCGGACGCCCTGAAGAAGCGAAAGTCTAAGGTTCTCCGCAGTGAAGGAGGAACCCCAGAGATGAAGCGAGGTCGCGGGGAAGGGGACCACCAGGATATGCGAGTGTATAGTGAGGAAGTGGAGCTGGACAGCAGGGACCCTGAGCAGGACTTCCTGCAGTACAAAGAGTCATGCGAGAGTTTGGCCACACTCATGAGTGAGATCCAGGAGCTGAAAGCGAATGGAGCCAAGGAGGGGTGTGCTGAGGTCGAGCAGAGACGTATGCAGAGCTGCATCCACTTCATGAATCTGAAAAAACTCAATCGTCTGGCTCACATGCGACTAAAGAGAGGCAGAGACCAGACACACGAGGCAAAGCAGAGGGTGGATGTGCTGCACCTTCAGTTACAGAACCTGCTGTATGAAGTTATGCATCTTCAGAAGGAGATCAGCAAGTGTCTGGAGTTCAAGTCTAAGCATGAGGAGATAGACTTGGTGTCTGAGGAAGCATTTTACCAGGAGGCGCCACAGGAAATTTCCAGGCCTCACATCACAAAAAATGATCCCCACCAGCTCACACTGGCACGACTGGACTGGGAGCTTGAACAGAGGAAGAGGTTGGCAGAAGAATACAAGGAGTCCCTGGCCACAAAAGAGAAGATCCATAAGAGCATCGAGGTGAAGAAGGAACATCTGACAAGCTTGCAGCCAGGACTCAATGCCATCATGCAGGCCTCTCTCCCGGTGCAGGAGTATCTGTCCATGCCTTTTGAGCAGGCTCAGATACAGACAGAGGTTGCCCGCCACCTGCCTCCACCTCTCTATGTCCTGTTTGTTCAAGCCAATGCCTATGGCCAGGCCTGTGACAAAAACCTGAGTGTCTCAATAAGTGGTGATGTGGATGAGGCCAAGGCCCTGTCCAAACCTCCAGAAGATTCCCAGGATGATGAGAGTGACTCAGATGCAGAGGAGGAGCAAGAGAAAACGAAGAGAAGAAGGCCAACTACAGGTGGCCAGCTGGATGAAAAAAGACGGGAGATGCTGAAAAAgcaccctctgtctctctgcttaGACCTCAAGTGTAAAGATGGCAGCATCCTCCATCTCTTCTtctactacctgatgaatctcAACATTATAACCGTCAAGACCAAGGTCTCCACCTCCACAGACCTCAACTCAGCCATCAgcgcaggGGACCTGCTGAAATCAGACACTCTACTCAGCTGTCTCTACGCCAGCGACCAGGGACGAGAAACGCCCAATCCAGCTAATCGCTACCAGTTTGATAAAGTCGGGATTGTTTCCTTTGCTGACTATTTGGAGGAGCTGGGCCATCCCTACATGTGGGTTCAGAGTCTAGGAGGACTACATTTTCCCAGAGATCCTTCAGAGAGTGTGCAGGTGGGCAGTTCTTTGAGTGCCAGCCACATGGAGACCACCATGAAGCTGCTGAGGGGAAGACTCCAGTCTCGCTTGGCTTTGCACAAACAGTTTGCCTCTTTAGAGCACAGCATCATCCCAGTCTCCAGTGAGTGTCAGCACCTCTTTCCTGCCAAGATCCTCTCCCGTTTAACTCGCTGGACCACTACCACTCAGCAGGAGTACATGGATCTGCCATTTACTCGACATGTGACTGATGCCGGGATGGCAAAGGAGACTGATATGTACTTCATGGCTGTGGTGGAAAGGGGCACAGCTCATCTCCAGGCCGCTGTTGTGCTGAATCCCCGTTACCCAGAaatccctcctctcttctcacTCTCGCTCAGCTGGAAGGGAGAGCGCAGTGGACGCACTGATGACAACCTCAGAgccATGGAGAGTGAGGTCAATGTGTTCAAAAAGGAACTACAGGGGCCACGTCCAGGACACCAGCTCCTGACCAATCAAATTTCAcgcctgtgtgtctgcctggatGTGTATTTGGAGACAGAAGGACAAGATGACAGCGTGGAGGGACCACGAGAGTTTCCCAGAGAAAAGATGTGCCTGCGCACTGTCAGGGGTCCAAATCGTCTGAAGCCATTCAAGTACAACCACCCTCAGGGCTTCTTCAGTCACCGCTAGATTTGTCCATATGATTCTCACTGCTGTACTTTACAACTTTAACTCCCTAAAGCTTACCTTTGTGGCTCTTTGACACACAAAGTATCTCTTTTTAAAAGTCTTTTTacctgtttaaaaataaaagaaaacaccatGTTATTTTCTTGAA

Function

GO: NA

KEGG:

id description
K13174 THOC5; THO complex subunit 5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU83677 lncRNA downstream 9019 18304157 ~ 18304356 (-) True G62493
TU83626 lncRNA downstream 77689 18234605 ~ 18235686 (-) True G62452
TU83570 lncRNA downstream 257232 18055251 ~ 18056143 (-) True G62399
TU83567 lncRNA downstream 257524 18055251 ~ 18055851 (-) False G62399
TU83475 lncRNA downstream 379907 17931742 ~ 17933468 (-) True G62339
TU83781 lncRNA upstream 8454 18329603 ~ 18329892 (-) True G62567
TU83782 lncRNA upstream 10235 18331384 ~ 18332396 (-) True G62568
TU83785 lncRNA upstream 34093 18355242 ~ 18357753 (-) True G62571
TU83803 lncRNA upstream 73687 18394836 ~ 18397946 (-) True G62586
TU83856 lncRNA upstream 200415 18521564 ~ 18521875 (-) True G62629
XM_039803087.1 mRNA downstream 9518 18297593 ~ 18303857 (-) False fancg
XM_039803086.1 mRNA downstream 9520 18297593 ~ 18303855 (-) True fancg
XM_039803085.1 mRNA downstream 16671 18287289 ~ 18296704 (-) True LOC120560503
XM_039802613.1 mRNA downstream 130470 18173443 ~ 18182905 (-) True rgmb
XM_039802611.1 mRNA downstream 142617 18163106 ~ 18170758 (-) True erap2
XM_039803093.1 mRNA upstream 405 18321554 ~ 18326918 (-) False tfip11
XM_039803091.1 mRNA upstream 405 18321554 ~ 18326918 (-) True tfip11
XM_039803097.1 mRNA upstream 11945 18333094 ~ 18344523 (-) False si:ch211-166a6.5
XM_039803096.1 mRNA upstream 11945 18333094 ~ 18344523 (-) True si:ch211-166a6.5
XM_039803233.1 mRNA upstream 116527 18437676 ~ 18443018 (-) True iqcd
XR_005639489.1 other downstream 9513 18298901 ~ 18303862 (-) False fancg
TU83669 other downstream 16697 18293256 ~ 18296678 (-) False LOC120560503
unassigned_transcript_262 other downstream 353491 17959813 ~ 17959884 (-) True trnaq-cug_5
XR_005639516.1 other downstream 417478 17859355 ~ 17895897 (-) False pip5k1bb
XR_005639576.1 other downstream 708255 17598088 ~ 17605120 (-) False LOC120561236
TU83796 other upstream 56453 18377602 ~ 18380502 (-) True G62580
TU83799 other upstream 61856 18383005 ~ 18386269 (-) True G62582
TU83818 other upstream 118760 18439909 ~ 18442825 (-) False iqcd
TU83834 other upstream 168723 18489872 ~ 18492390 (-) False zgc:158398
TU83852 other upstream 189006 18510155 ~ 18512261 (-) True G62626

Expression Profile