RNA id: XM_039803093.1


Basic Information

Item Value
RNA id XM_039803093.1
length 2872
RNA type mRNA
GC content 0.49
exon number 15
gene id tfip11
representative False

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 18321554 ~ 18326918 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTTTGTATTCCGTAACCCCTGTCCGCGTGTTTTTCGCCACATGAACTGCCATGAATCgaaaaaccaaacacaattCAACAaccttttaaattattttgttttcttctgtaTAATTGAGACACATTTACGCGTAACTTACATGTAAATTGAGAAAAGGGAAATACATTTTCGGGGTACAATATTTGGTGAAACACCGGCAACCGGAAGTACTGCATACTGAGATGTCCATGTCCCATCTGTatgggaggagagaagaggaggaggaaggtgtGGAGATAGAGAGCTTTGAGGTGACAGACTGGGATCTGGCCAATGAGTTCAACCCAGACCGCCGCAGATACAGGCAGACCAAAGACCAGGCTACCTATGGGATCTGGGCTGACAGGGACTCAGACGAGGATGAGAGGCCTAGCTTTGGGGGCAAGAAATCCAAAGACTACAGTGCCCCAGTGAACTTTGTAAGTGCTGGTCTGCGTAAGTCTGCAGCTGAGGagaaacagcaacaacaaaaagtagAAGGAGACTCTGATGACTCAGAGGAAGATGGTCCTTCAGCACCTCCCCCTCCTCGTGGCGCTGCACCCAAAAAACTCCAGATGGGTAATTTCCGGGGGAACCAGTCTCAGAGGTTTGCAGGTGGCATACAGTCTGGTAAAGGCATTGGTACCTGGGAGAAGCACACAAAGGGAATTGGACAGAAACTTCTGCAGAAAATGGGCTACCAACCAGGCAAAGGCCTGGGCAAGAATGCTCAAGGTATTATAAACCCCATTGAGGCAAAGGTTCGTAAAGGCAAGGGAGCCGTGGGTGCTTATGGCAATGAGCGAACCCAGCAGAGTCTCCAGGATTTTCCCGTGGTCGactcagaggaagaggaggagaaggaGTTTCAGAAGGAGCTAGGCCAGTGGCGTAAGGATCCTGCAGGCTCTATAGGAAAGAAGAAACCCAAGTACTCTTACAGAACTGTGGACGAGCTGAAAGCTAAAGGCAAGCTGGCAGGGCGCAGTACAGCGGCATCCGCTGGAGAGTTGGCACAGGTCAAGGTTATAGATATGACTGGAAGAGAACAAAAGGTATATTACAGTTACAGTCAGATGTCCAACAAGCACAGTGTTCCAGATGAAGGTCCTCCAAGCTTGTTGGCTCAGGATCAGAAGGGATCTGGCTTTGCTCTCCCTGAACTCGAACATAACCTGCAGCTTCTGATAGACCTCACAGAACAGGACATATTACAGTCCGCCAGACGTCTGCAGCATGAAAAAGATGTGGTTGTGTCTCTGAGCCATGAGTCACTAgcactgcagagcagactggATGCAGAGCAAGAGTCCATCCGGAGAATGGAGGCCGTTTTGGCATTGGTGGGGCGTTTTCCTTCTGGGGAGATGGCACCTGGGGAGGGACCCACTCTGCAGGAGTGTGCCCGGATCTTTGAGACTTTACAAACAGACTATTATGAAGAATACAAGACAATGGGATTGGCAGACCTGGCTGTAGCTGTCGTTCAGCCATTACTTAAAGAGAAAGTTCGTTCCTGGGACCCTCTGAAGGACAGCTCTTATTGTCTTGAAGACATTGGTCAGTGGAGAGCAATCCTTGAATCTAGAGACCTCCATAACAGTGCCCCAGATTCAAACATGGACCCTTAccacagACTGTTGTGGGAAGTTTGGATCCCAGTGATGCGGCCCTGTGTGTCAGGCTGGCAGCCTCGTATTGTAGGGCCAATGGTGGACTGCGTGGAAGTGTGGGCTCCTCTTCTCCCCGTGTGGATCCTGGATCACCTGATGGAGCAGCTGATCTTACCCCGGCTACAGCGAGAGGTGGATAACTGGAACCCTTTAACTGACACAGTGCCCATCCACTCCTGGATCCATCCTTGGCTTCCTCTGCTCCAATCACGTCTAGAGCCTCTTTACCCACCAATCAGGAGCAAACTATCCAATGCCTTGCAGCGATGGCATCCCAGCGACGCTTCAGCCCGCCTCATCCTGCAGCCTTGGAAAGATGTGTTCACACCAGGTGCATGGGAGGCCTTCATGGTGAAAAATATCATCCCTAAACTAGCTCTGTGTCTGGAAGAGCTAGTTATCAACCCTCATCAGCAGCAGATGGAGCCATTTCACTGGGTGATGGACTGGGAGGGCATGTTGTCCCCTTCCAGCCTTGTGTCGCTCCTGGACAAAAACTTCTTTACAAAGTGGTTGCAGGTCCTGTGTTCATGGTTGAGCAACAGTCCTAACTATGAGGAAATCACTAAATGGTACCTGGGTTGGAAAAGCATGTTTAGTGACGCCTTGTTGTCACAGACGCTCATCAAAGAGAAATTCAACGAAGCTTTGGACATCATGAACCGCGCAGTGTCTTCAGGCATGGGTGGATATATGCAACCTGGTGCAAGGGAGAATATTGCCTATctaacacagacagagagacgaaAGGACTTCCAGTATGAAGCGATGCAGGAGCGCAGAGATGCTGAGAGCGTGGCTCACAGAGGCATCAGTGCTGGTGTGCCGACTAACTTCAAAGATCTTATCCAGACTAAGGCAGAGGAGAACAACATTGTCTTTATGCCCTTAGTGGCCAAACGGCACGAGGGCAAACAGCTGTACACCTTTGGGCGTATTGTCATTTACATAGACAGAGGGGTTGTGTTTGTGCAAGGAGAGAAGACCTGGGTGCCCACGTCTTTGCAGAGTCTGATAGATATGGCCAAGTGAGGGTGGGCTGACTGATTCCTTGGTCTGCTAAGTGTAAAAGAGAATAAGTAGCGCAAATGTTAACTTCAGTATGCTGATCCTTGTCATGTGTCtttgtacatttttaaagtatCACTAGAACTGTGAATAAATAATTTTCAAATGTA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006397 mRNA processing biological_process
GO:0008380 RNA splicing biological_process
GO:0005681 spliceosomal complex cellular_component
GO:0003677 DNA binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU83677 lncRNA downstream 17198 18304157 ~ 18304356 (-) True G62493
TU83626 lncRNA downstream 85868 18234605 ~ 18235686 (-) True G62452
TU83570 lncRNA downstream 265411 18055251 ~ 18056143 (-) True G62399
TU83567 lncRNA downstream 265703 18055251 ~ 18055851 (-) False G62399
TU83475 lncRNA downstream 388086 17931742 ~ 17933468 (-) True G62339
TU83781 lncRNA upstream 2685 18329603 ~ 18329892 (-) True G62567
TU83782 lncRNA upstream 4466 18331384 ~ 18332396 (-) True G62568
TU83785 lncRNA upstream 28324 18355242 ~ 18357753 (-) True G62571
TU83803 lncRNA upstream 67918 18394836 ~ 18397946 (-) True G62586
TU83856 lncRNA upstream 194646 18521564 ~ 18521875 (-) True G62629
XM_039803090.1 mRNA downstream 405 18313375 ~ 18321149 (-) True thoc5
XM_039803087.1 mRNA downstream 17697 18297593 ~ 18303857 (-) False fancg
XM_039803086.1 mRNA downstream 17699 18297593 ~ 18303855 (-) True fancg
XM_039803085.1 mRNA downstream 24850 18287289 ~ 18296704 (-) True LOC120560503
XM_039802613.1 mRNA downstream 138649 18173443 ~ 18182905 (-) True rgmb
XM_039803097.1 mRNA upstream 6176 18333094 ~ 18344523 (-) False si:ch211-166a6.5
XM_039803096.1 mRNA upstream 6176 18333094 ~ 18344523 (-) True si:ch211-166a6.5
XM_039803233.1 mRNA upstream 110758 18437676 ~ 18443018 (-) True iqcd
XM_039803232.1 mRNA upstream 110758 18437676 ~ 18441111 (-) False iqcd
XM_039803231.1 mRNA upstream 128309 18455227 ~ 18462329 (-) False slc8b1
XR_005639489.1 other downstream 17692 18298901 ~ 18303862 (-) False fancg
TU83669 other downstream 24876 18293256 ~ 18296678 (-) False LOC120560503
unassigned_transcript_262 other downstream 361670 17959813 ~ 17959884 (-) True trnaq-cug_5
XR_005639516.1 other downstream 425657 17859355 ~ 17895897 (-) False pip5k1bb
XR_005639574.1 other downstream 716434 17598088 ~ 17605120 (-) True LOC120561236
TU83796 other upstream 50684 18377602 ~ 18380502 (-) True G62580
TU83799 other upstream 56087 18383005 ~ 18386269 (-) True G62582
TU83818 other upstream 112991 18439909 ~ 18442825 (-) False iqcd
TU83834 other upstream 162954 18489872 ~ 18492390 (-) False zgc:158398
TU83852 other upstream 183237 18510155 ~ 18512261 (-) True G62626

Expression Profile