RNA id: XM_039803095.1


Basic Information

Item Value
RNA id XM_039803095.1
length 1113
RNA type mRNA
GC content 0.48
exon number 6
gene id srrd
representative False

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 18326964 ~ 18328537 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TAGTCCCATTTGCTTCAGAATCGCCAACCCGTGGCAGCACTTATATTAGAACTttgttaataaatatattttttatcgcatatctgtgtatgtgtatataggGCACCGGTGAATTATTATAGATGTCTGACACCGGGGAGGAGTGGCAGGTGGCCCGGCGACGAAAAGGTGCAGCGCGAAAATCAAAACCAATACAGGGGTCCTCACATTCAACATGCTGCCAGGAGCAGCTGGATATCGGGAAAACTGTTAAACGAATCAGAGACACAGTGTCTGAGCTAAGATGCGAGGAGTTTTGTCAACAGTGGAAAGAGCAGGTGCTTGTGGCAGGATCAGCAGCCCTCTCAAAACCTCCAGAGGACAGGGACACCGAGGGCACCACCGACCAGCTGGGGAGCCCCAGAGATGGCAGACAATGTCAACAGCTGGAGTGTGTTTGTTATGGCCTTGGCTCCTTTTCCTCCTGTGTTTCAGCTCGCTTCCAGCTTGctatgttgctgctgctgctggatgcAGGACAGATTCCACTAAGGGACTGCTCTGTTTATGACCCCATGTTCTCATCTGGAGAGAGGGATGTCTTAAGAGAGCTGGGTCTGACTGTACTCACGGAAAATGAGGAGGGGAAGCGTCTGGTGACTAAACCCACGCTCTTTTACCTGATGCATTGTGGGAAAGCCCTGTACAACAACCTTCTGTGGAAAAATTGGAGtacacaatgtcttcctctgatgatAATCATTGGAAACAGCTTCAATGGCATGATGGACAGAACAATCGAGAGAGAGTTCAAGCGGGACTACAGCTACATTACTcaggctgtgtctgtgtgtgaggagggaCAGCTGCCTTGTCCATCCCGTCTGATTGACATCTTCAGTGACACTGCAGTCATCACCTTTCCTACAAGCAGCCTAAACAAACTCCCACAATCCACCTGGGCAGAGCCGCCTGAACCACAGTACCAACACTGCCCTGATTTGGAGATAATTCAGAGGGAAACACAGAGCTGAGACAGGAGATGAACAAGAAATGGACAgtactttgttttttattgatgcATTGATGTAAGCAGtttaaacttcttttttttaaaggtcctatgacatgctg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU83694 lncRNA upstream 5806 18320643 ~ 18321158 (+) True G62508
TU83688 lncRNA upstream 12187 18313211 ~ 18314777 (+) True G62502
TU83666 lncRNA upstream 30061 18293260 ~ 18296903 (+) False G62484
TU83667 lncRNA upstream 31658 18293260 ~ 18295306 (+) True G62484
TU83580 lncRNA upstream 197895 18128826 ~ 18129069 (+) False setbp1
TU83741 lncRNA downstream 36743 18365280 ~ 18388485 (+) True G62533
TU83734 lncRNA downstream 112825 18441362 ~ 18474731 (+) False tpcn1
TU83749 lncRNA downstream 128961 18457498 ~ 18459249 (+) True G62540
TU83769 lncRNA downstream 169426 18497963 ~ 18498301 (+) True G62557
TU83771 lncRNA downstream 170093 18498630 ~ 18498972 (+) True G62558
XM_039803089.1 mRNA upstream 15331 18306898 ~ 18311633 (+) True LOC120560506
XM_039803088.1 mRNA upstream 39682 18282370 ~ 18287282 (+) True akr1a1a
XM_039804346.1 mRNA upstream 46852 18270719 ~ 18280112 (+) False dnajb5
XM_039804345.1 mRNA upstream 46852 18270720 ~ 18280112 (+) True dnajb5
XM_039803282.1 mRNA upstream 58383 18245501 ~ 18268581 (+) True epg5
XM_039803104.1 mRNA downstream 17017 18345554 ~ 18357632 (+) False ddhd2
XM_039803105.1 mRNA downstream 17025 18345562 ~ 18357632 (+) False ddhd2
XM_039803107.1 mRNA downstream 17039 18345576 ~ 18357632 (+) False ddhd2
XM_039803103.1 mRNA downstream 17050 18345587 ~ 18357632 (+) False ddhd2
XM_039803106.1 mRNA downstream 17050 18345587 ~ 18357632 (+) False ddhd2
XR_005639579.1 other upstream 317646 17998686 ~ 18009318 (+) False cmya5
TU83072 other upstream 1792815 16533329 ~ 16534149 (+) False LOC120560897
TU83070 other upstream 1851059 16468367 ~ 16475905 (+) False LOC120560890
XR_005639530.1 other upstream 1851067 16468323 ~ 16475897 (+) False LOC120560890
TU82943 other upstream 2549823 15763114 ~ 15777141 (+) True mctp1a
TU83701 other downstream 2168 18330705 ~ 18331230 (+) True G62513
TU83742 other downstream 78850 18407387 ~ 18416006 (+) False tbx5b
TU83744 other downstream 87591 18416128 ~ 18419590 (+) False tbx5b
XR_005639481.1 other downstream 332620 18661157 ~ 18681161 (+) False acacb
TU84360 other downstream 1106370 19434907 ~ 19448950 (+) False rasl10a

Expression Profile