RNA id: TCONS_00075004


Basic Information

Item Value
RNA id TCONS_00075004
length 475
lncRNA type sense_over
GC content 0.39
exon number 3
gene id XLOC_038013
representative True

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 35026415 ~ 35161005 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

actttttttcaattatttaaaagttCTTGCTACCATATTTTAAACAGAATGTTTTTTTGCAGGCCTACCAGTCACTGATTGGACTAACGCAACACGTGACCCGTTTGCACGTGAATTACAACATCCTGTGAAAGTTGTCACAAATATAAAGGGAAAGTATCTAAACAGCAGCTATTAAAATGCACTCTAGAATGCACGATTCTTACCTGTCAACAGAGTCATTCAGTGGGTGGAGGTTTTGCTGGCTTCCTTGGCAACAGCTGTCCTATCAGttgAACTGTCAGGATTTGGACACAGGATTGTGGAACATCAAAGACAGCAAAGGATGCATCAATCCTTCAAAAATCAATCCGATAAAGGTCTGTCAGCAGACAGAAGTGAAGCTGGATTAAGATTTAAACATGTCTGTTTATGTACCTTGGAATGCATCCTTCAAAGGTAGTATTTTCTTGCTTTCGGACATTTACAACATCTC

Function

GO:

id name namespace
GO:0008593 regulation of Notch signaling pathway biological_process
GO:0007399 nervous system development biological_process
GO:0048675 axon extension biological_process
GO:0007409 axonogenesis biological_process
GO:0045664 regulation of neuron differentiation biological_process
GO:0007417 central nervous system development biological_process
GO:0060026 convergent extension biological_process
GO:0001944 vasculature development biological_process
GO:0031175 neuron projection development biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005515 protein binding molecular_function
GO:0008201 heparin binding molecular_function
GO:0046914 transition metal ion binding molecular_function
GO:0004867 serine-type endopeptidase inhibitor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00074574 lncRNA downstream 239442 34908935 ~ 34915388 (-) True XLOC_038008
TCONS_00074570 lncRNA downstream 277458 34874903 ~ 34877372 (-) True XLOC_038006
TCONS_00074565 lncRNA downstream 341947 34773621 ~ 34812883 (-) True XLOC_038001
TCONS_00075417 lncRNA downstream 341948 34712779 ~ 34812882 (-) False XLOC_038001
TCONS_00074592 lncRNA upstream 471288 35632293 ~ 35633657 (-) True XLOC_038015
TCONS_00075420 lncRNA upstream 519963 35680968 ~ 35832754 (-) True XLOC_038016
TCONS_00075005 lncRNA upstream 829659 35990664 ~ 35995392 (-) True XLOC_038019
TCONS_00075421 lncRNA upstream 1238906 36399911 ~ 36413250 (-) True XLOC_038021
TCONS_00075006 lncRNA upstream 1584530 36745535 ~ 36746819 (-) True XLOC_038022
TCONS_00074584 mRNA downstream 85053 35026415 ~ 35069777 (-) False XLOC_038013
TCONS_00074587 mRNA downstream 85185 35028297 ~ 35069645 (-) False XLOC_038013
TCONS_00074586 mRNA downstream 85185 35028297 ~ 35069645 (-) False XLOC_038013
TCONS_00074585 mRNA downstream 85185 35028297 ~ 35069645 (-) False XLOC_038013
TCONS_00074583 mRNA downstream 168003 34978867 ~ 34986827 (-) True XLOC_038012
TCONS_00074589 mRNA upstream 9330 35170335 ~ 35557397 (-) False XLOC_038014
TCONS_00074590 mRNA upstream 9763 35170768 ~ 35334642 (-) True XLOC_038014
TCONS_00074591 mRNA upstream 470435 35631440 ~ 35633827 (-) False XLOC_038015
TCONS_00074594 mRNA upstream 711693 35872698 ~ 35875051 (-) True XLOC_038018
TCONS_00074600 mRNA upstream 1735252 36896257 ~ 36924388 (-) True XLOC_038027
TCONS_00074567 other downstream 303026 34848860 ~ 34851804 (-) True XLOC_038004
TCONS_00074564 other downstream 401671 34753044 ~ 34753159 (-) True XLOC_038002
TCONS_00074544 other downstream 1233259 33921464 ~ 33921571 (-) False XLOC_037985
TCONS_00074543 other downstream 1233806 33920932 ~ 33921024 (-) True XLOC_037984
TCONS_00074537 other downstream 1370323 33783555 ~ 33784507 (-) False XLOC_037982
TCONS_00074593 other upstream 540650 35701655 ~ 35701772 (-) True XLOC_038017
TCONS_00074595 other upstream 957955 36118960 ~ 36120526 (-) True XLOC_038020
TCONS_00074596 other upstream 1599884 36760889 ~ 36761294 (-) True XLOC_038023
TCONS_00074597 other upstream 1604618 36765623 ~ 36766028 (-) True XLOC_038024
TCONS_00074598 other upstream 1609352 36770357 ~ 36770663 (-) True XLOC_038025

Expression Profile

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