RNA id: XM_039803097.1


Basic Information

Item Value
RNA id XM_039803097.1
length 4763
RNA type mRNA
GC content 0.51
exon number 28
gene id si:ch211-166a6.5
representative False

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 18333094 ~ 18344523 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTTATACTCAGGGAGGACAGATAAGCTGAGTTTGCCTTGGAGAGAGGGGCAGGATTCACAATCCTGTACGGACAGCCGTTTATTTTCACTCTGCTGGGCTCTCTTAACATTCAGCAACTCATTTCCACTCCCTCTCTTGTGCATTTCTCTAAAAGTTTGAAGGGGAAGTGGCTTCCAGAACAGACAAGTAAAAACCCAAGAGGACAGCTCAAGAAAAAGTACAGCACGCAGCCATGAAGGACAAAGtcaggagaggaggaaaaaatCAGGCCAAGGCTGATGTAATGAGCCTGACTGGCGACAAGGATGCTGTTGGTATGAAGTCACATGAGGACACATCGTTCCCTGTGAAGATCCAGGGAGCAGGAGTAGAGCCATTTGAGCTGCAGGTCCATGGATTTTGGCTTGTACAAGATGCAGTAATGACTCTGCTTTCGAGGGATGAGGTGTGTCCACGGTCAAACTTGTCGCTGGCACTAGCTGGTACGACTCTGGACCCCCTCGCAGAACTGCAAAGCCTCAAGGGGCTAAAACCAGGAGTCATCCTTCGCCTGGTGGAAGAGCCCTACACCGCCCACTCAGCCAAGCTCCATCTGGCTCGTGTGCTGGAGCTGCTGAGAGCGTCTGGACCTCAGGATGCACTGAAAGAAGGACGCTCCCCAAGCATACTGgagacactcacacatacacacacatcagACTCCAGCTTACCGAATGGAAAGAGCCTGAAACGCTCATTAAgcaacacaaaaacagaaaaaaacaatccGGATGGAGCTCCACCTGAGTATCTCCTCCCTGGTTCCTCAGAGAGACCACTCATGGCCCTGCTACCACACAGCTCCCAACCAGAGGCCCCCAGCTACCTGAGGGACTTGTCTCTCAGCTGTTGGAACCCGGCTCCAGGATACAGGAAGCTGCAGGGAGATTTCCTGTATATCACTGTGGTGACAATGGAGGGACGACGTTTTGACATCACAACCTGTCCTAAAGGTTTCTTCCTCAATAGGTCTACAGAAGAAATGTTTGATCCTCGTCCTGCACAGTCTTCCCCAGTCTGTCATAGTTTGACTGACCTGCTCTGTCACATCAGCCCTGCCTTCAAACAAACTTTGACCACCCTCAAAAACAGGTCTCAGTTACCTCCAGTAGAGGTGATGCCCACTCCTTACCACACCCTGAGCTGGCTCGGGCCTCCCTGTGGCTCTCGCACTCACAAAAACACCTTCAGCAGACTGGGAGTGGATGAACAGTCAGCACAAGAGgcTCCGGACTGGAATGAGGAGTTGCAAGCTGCCAGAGATCTTCCACAAGGCACTCTGGAGGAGaggctgcagagagacagagctcTGCTCCAGgtgAACTGTGGATTTGTTAGGGCTGTGAAGCAGGGGGCACAGACTGTTGTAGACAGCTTTGTGGAGCCAGTGAATGGAAACACTGAGGACCCAGCTTTTCTGTGGGGCGGCCTGTTCATGAGCCAGGGGGCAGCAAGCGCAATGTTTGGTGGGGACAGGGGTCGCAGGGCTGCTCAGAGGCTGGAGCTGAAAGCAGTACAGGCCTACAGTAATATCGGGGGGCTGCACACTCTACCTACAGCCGTTGTGGACTACAGAGGAGTGCGTCTGTCTGCTCAGGGTCTTGCCCCAGGGTTGGAAGGCTCAGAGCAGGACCAGGCATCTGCTCCTGCCTCAAGAGGCTTGCTGTACGGGGTAAATGCAGGACCTCAAGAGTCCCCCCAACGCAGACGGCTGCTAGAGCTCTTGGCTCAGGCTGCCAAATCTCTCTCCCTCCAGAGACATGTTGTTGTGGCGCCCAATGGTCACAAGGTACCCCTTTTCACCTCAGTGGAAGCTCAGGGGTTGTTGGGGGCTGATGGGAGGTTCTACATACTGGATGTGTTCAGGACCTTCCCAGCTGATGCCAACTTCTGCCAAGAGGTGGAGACAGAATGTCAGACAGTCAATGGAGAAGAGGAGAGTGATAAATGCTGTAAAGAGGACAAAGAGAAGAAGGGTTGTGTAAAAGAAGGTTGGCCAGAGAATTATCACTCAGACTCTGGGTTTCCAAAGAGCTTCCCTCATGGGCTCTGTAGACTGAGGCCAGAGCTGGTACAGGCCTTCATTCAGCACAAACATTGCCAGTTCACACAGCACGTCAGGGAGACGTTGGATGAGAATGGAGGCTTTGAAGAATGTGCAACAGCTTGTGACTCTCGAGCCACTCAGGCAGTACGAGCTGCTTGTAAAGAAGTGGGCTCAGTCAGTGACATCATCTTTGAGATGCGCTTCAACCCAAGCATCTTTTCTCCAGTGTCCTTCCCTACTGGTGAAAGTAAGTCGACGAATCTGCAGAAGAGGTTACTGAGGGAAGCAGCAGCTTTCATCATCACACATCAGATACCAGCCTTTgtgGAGTATTGCCTACAAAGCAATGAGGCACCAATGGATGGAGTTTCTCTAAAACTGGCCCTACACCAGAGAGGCATCAACCTCCGGTATCTGGGCCATGTCATCACAACCATCAGCCAGTCAGAACACAAGGAGCGCCTGAGGCATATAACAAGATCGGTCATAGGGGAAATTTTCACCCGCTCAACAAGAAGAGTGTTCAACAATTTCCTTCAGGGTGTGGACGTGCCTAGTCTCTCTGCAGCTGTCAGTCACTTTCTGTGCTGCCTATTGGTTCCCCACTTCACACCCACTCCTGTGGGGGAGGAGACTAAGAAGAAGTCAAGGAGGCGTGGCCGAGGGGCTGGGGCCCCTGAAAGCAGCACGCCCTGGAGTACGCTCACAGGGTCTGAGCTGTGGAACCTGGTCTGCCAGGATGCTGCTGAAACATATAACATCTCTGACAGCCTTGGCTCTGGTCCGAACCACCTGGTGGAGCACTACAGCCTTCAGAAGCTCTCTTTGCTCAGAGAGTTCTGTTTAAAGACTGGAATACAGTTGAGACTGAGAGACTACGTCTTcgacaaccaaaacaaagctcCCATCGGTCCAGACGACGTCCTCAACATCTTTCCTGTTGTCAAGCACATTCACATGCCAACTGTGGATGCTTCAAAAGCATTTAGTGCTGCACAGAACTTCATTCAAAAGGGTCTGCTGGATCAGGCCCATGAGCACCTGAAAGAAGCAGCCTACTTGTTTGGTAGGGTGTGTGATGACCTGCACCCTGAGGCCTGTTACTGCCACAGCATGTTGGCCAAGGTGGCCTTTGTGCAGGGCAAGGCAGCTGAGGCTCGCAGTGTCCAGCTGAAAGCAGTGGTCATCAGTGAGAGAGTGCTTGGCTTTGACCATCCAAACACTATCCAGCAATATGTACTCTTGGGTGTGTATGCATTTGCTGGAGGGGAGACTGCCCTGGCCCAGAAGTGTCTCCTCAGAGCTCGTCTGCTAATGCTAACAGTCCATGGAGAGGACCATCCCTACACCGCAACACTGGATAGCTGTATTGGGTTGGTGCTTACAGGAGATCAGAGAGGGCTGTTCTTAAAGAACGCCCTCAGACTCAACACTTCCTTCTTTGGCCCCTCACATCTGCACACTGCTCTCAGTCAGCACCTGTTGGCCCACTGGATGTGCAGCAAAGGGGACTACCGAAGTGCTATGACCCACGAGAAAGAGGCCCTCACTGCTTTTACCATGCTTGGAGAGGATCACCCTCAGACACGTTGCAGCAAAGAGTTTCTTTGCACCATAACCAAGCAAGCAGTGAAGGTGGAACGTTCTCTCAGACAGGCAGGAGCTGACTGCACGGAGCAGACAGTGGAGTGTCTAACTTCCACATCTGACACTCTGCTGGAGCAAATGGTCCTGGTGACAGGGATCAGGAGCATCACACACAGAGATGGCCTTCAGGAGTATAAGAAGAAACACAAAGAACTAAAGGCAGCGGTGGCAAAAGAACTGGGATTCATAGTAACTAACGAGCCCGTCGCCTCAGAGACTGTGAACGGAGAAGAGAAAGGCTCAGAGCAGGAAACAGGAAGCGGGAAGGAAGCTGAGGATGGAGGAAGCTCAGCATTAAAGAATACCAGCAAGAGCCAACAGAAGAAGCCAGTGAAAGAGACCTCGGTGAAGAGTGCTGCCATAGTTTCAGCTAATGGTCATGTGGTGGAGTCAGCTGAAGAGAACCAGCATGAGGAGAAAACAGATGTAGATGGAGGAGACAGTGACAGAGCAGCTTCAGATGCTGAGGTCAAGATAGTGAATGGGGAGTCAAAGGTAAGGGCTGCAGGAAAGGAAACTGAGACCAGTGCACCAAATGAAGTAAACAGCAACACAGCCAATGGGGAGATCAAATATGACGCAACAATTGATGAGATGAAGTCAGAGTCAGATGAGGTTAATGGTAAAATAAATGGAGCCTGTAACATCACTGTAAGCCCATCAGTCCTTAAAAGTAAAGGAACCTGGGCAGATGTTGTTTCAAAGGCCAATGGAGCAGGAGGCATACACACAGCAGTCAACGGAGTAGCAGATAATGTCACTGCTGATGAGCTGAAAGCTGAAGAGTGAAAACCTATCAAAACAGGAaaacagtgttgtagtcaagttTTTCCCAAGTCACTGCTGTAATAATAAAACTCTCCCAGGATGCTAAATGTAATTTGAGCCAATGAACATGAAGCAGGGAACAGAGAGTAAGAGGATGAGGAGTATTACTTTGTGCTGGAGATGTTGTTGCTGATGCTGGGAGGGGGTTGTACTGTTGagtgctttattttttttcaacaataaaCTTTTTACTCTGGTTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU83782 lncRNA downstream 698 18331384 ~ 18332396 (-) True G62568
TU83781 lncRNA downstream 3202 18329603 ~ 18329892 (-) True G62567
TU83677 lncRNA downstream 28738 18304157 ~ 18304356 (-) True G62493
TU83626 lncRNA downstream 97408 18234605 ~ 18235686 (-) True G62452
TU83570 lncRNA downstream 276951 18055251 ~ 18056143 (-) True G62399
TU83785 lncRNA upstream 10719 18355242 ~ 18357753 (-) True G62571
TU83803 lncRNA upstream 50313 18394836 ~ 18397946 (-) True G62586
TU83856 lncRNA upstream 177041 18521564 ~ 18521875 (-) True G62629
TU83857 lncRNA upstream 190410 18534933 ~ 18535281 (-) True G62630
TU83851 lncRNA upstream 194603 18539126 ~ 18540015 (-) True G62625
XM_039803093.1 mRNA downstream 6176 18321554 ~ 18326918 (-) False tfip11
XM_039803091.1 mRNA downstream 6176 18321554 ~ 18326918 (-) True tfip11
XM_039803090.1 mRNA downstream 11945 18313375 ~ 18321149 (-) True thoc5
XM_039803087.1 mRNA downstream 29237 18297593 ~ 18303857 (-) False fancg
XM_039803086.1 mRNA downstream 29239 18297593 ~ 18303855 (-) True fancg
XM_039803233.1 mRNA upstream 93153 18437676 ~ 18443018 (-) True iqcd
XM_039803232.1 mRNA upstream 93153 18437676 ~ 18441111 (-) False iqcd
XM_039803231.1 mRNA upstream 110704 18455227 ~ 18462329 (-) False slc8b1
XM_039803229.1 mRNA upstream 110704 18455227 ~ 18462329 (-) True slc8b1
XM_039802317.1 mRNA upstream 118680 18463203 ~ 18467837 (-) True LOC120560133
XR_005639489.1 other downstream 29232 18298901 ~ 18303862 (-) False fancg
TU83669 other downstream 36416 18293256 ~ 18296678 (-) False LOC120560503
unassigned_transcript_262 other downstream 373210 17959813 ~ 17959884 (-) True trnaq-cug_5
XR_005639516.1 other downstream 437197 17859355 ~ 17895897 (-) False pip5k1bb
XR_005639574.1 other downstream 727974 17598088 ~ 17605120 (-) True LOC120561236
TU83796 other upstream 33079 18377602 ~ 18380502 (-) True G62580
TU83799 other upstream 38482 18383005 ~ 18386269 (-) True G62582
TU83818 other upstream 95386 18439909 ~ 18442825 (-) False iqcd
TU83834 other upstream 145349 18489872 ~ 18492390 (-) False zgc:158398
TU83852 other upstream 165632 18510155 ~ 18512261 (-) True G62626

Expression Profile