RNA id: XM_039803106.1


Basic Information

Item Value
RNA id XM_039803106.1
length 4310
RNA type mRNA
GC content 0.44
exon number 19
gene id ddhd2
representative False

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 18345554 ~ 18357632 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTCTTTGGTGATGTTTTCGGAGACTGTTTGATTTAGAGTTTAACAGACTTGCTTTGTGTCACAGCGGAATATTGACCGGAAGAAAATGTAGGATTTTATGAATTTATTAGGAatattctttattattattggaCACTGTGTTCAGCTGGGTTGTTACAggtcctgtgtttgtgtggccCCGGCCACCGTCAGGGCAGAGCTGAGGGTTTGGGTCAGCTGTTGGGCTAATGTCACAGAGTCCTGGTGAGGAGGGGGGTCTACCTCAGGCTGCCCCTATCATCAACCTAGACAACCCCATCCAGACTGTGGCAACAGGGAACACACCTGAAGATCAGGCGTCACCTGTGGTTGATGAGGCCTCTCCTTCTTCCACGTTCTCCTTTGAGATGCTTGACATGGAGTCGTTCCCAGCTCCTTATCAAGAAGTGCAGCCTCACTGGTTCTTCTGTCGACGGAGCGATGACAACACCTCCTGGCTCCCTTTCAGCAGAGAAGACTCTGACAAACTAGAGAATGCCTGCAACACTGTAAAAGACGAGGAGGATGAGGTAGTGATAGCTGTGGAAGGAGAGCGGTATGACGTACATGTCAAGGAGAGGAAGCGCTATGCTGTGTACTGGGAGCAAGGCCCCACTGAAGTCCGCCGCTGTACCTGGTTCTATAAAGGAGACAAAGACACCATTTTCATGCCTTACCCTGAGGACTTCAGCAAGAGTCTGGAGGAGGCCTATATGATAGCAGTGACCTTGAATGAATGGAAGAGGAAACTGGAGTTTTCCAATGGAGAGACTGTCATCTTACACAATCCTAAGCTAATAATGCAGTATCAGCCAATAGGATTGCAAGATGATTGGGTGTCCTCCCCCTCGGAGCACACCCGGCCTCAAACAGTCAAGAGGGGAGTGGACAACATCTCTGTAGAAATACCtgatgGTGAACCGGAAAAGGTAGACCACCTTGTCTTTATGGTCCATGGCATCGGCCCTGCATGTGACTTGCGCTTCAGATCCATCATAcagtgtgTAAATGACTTCAGGAGTGCTTCCCTGTCCCTCCTGGCCTCTCATTATAAGCATGCTCAGCAGGATGGCCAGATAGGAAGAGTGGAGTTCCTCCCAGTCAACTGGCACAATGCTCTTCACGGTGATGCCACTGGTGTGGACGAGGACATCCAGAGGATCACTCTACCCAGCATCAGCAGGCTGAGACATTTCACCAACGACACTCTGCTGGACCTGTTTTTCTATAACAGCCCCACCTACTGCCAAACCATAGTGGACACAGTGGCCTCAGAGATCAACAAGCTCCACACCCTCTTTAAACAGAGACACTCAGAATTTAAAGGGGCAGTTTCAGTAGTGGGCCATAGCCTGGGTTCGCTGATCCTGTTTGAcctgctgaccaatcagaggacTGGATTAGAAGCCAGAGAGGGGGTGCCCTCTGGTGAGCCCTTTCGTCCTAACTGTGACACACTGCAGCAGACTCTGACCAGACTGGGCCTAGAGCAATACCTGGATACACTACAGGCAGAAAACCTAGACCTGGAATCactgGCTCTTTGCCAAGACAGTGATCTCAAAGATTTAGGAATTCCTCTTGGCCCTCGGAAGAAGATCCTGAACTATGTCAGGAGGAAATGGCTTTCAGAGGATTGTAAGAAAAGGGCCGGACGCCTGCCACCTGGGTTGCAAGTTCCACCTCAAGTGACCAGCGATCACGATGGTAACCAGTCTTCAGGATTAACGACGCAGCAGTCCCAGTTCCACAGGGCGCAGTCTGTCACCAGTGCTGTAGACTACGAATACTTTGACGTTGGCATTGGACAGACCAATGGAGGCATAGCCAAGGGACAGGTATCCATTGATTACCCACAGCTGGCTTTCCAACCTCAAACATTTTTTGCTTTTGGCTCTCCTATTGGAATGTTCCTGACCGTTCGTGGGCTCAAACACATCGATCCTAACTACACCTTCCCAACCTGCAAGAGCTTTTACAACATCTACCACCCGTATGACCCTGTGGCTTATCGGTTAGAGCCTATGATTGTAACAGAGGTGGATCTGGAGCCCATGCTGATCCCTCACCATAAAGGCCGCAAGAGAATGCACCTGGAACTAAAGGACAGCTTGACCCGTATGGGCATGGATTTGAAGAACAATGTTTGGGGATTGTTACGGACAGCATGTCAGTCCTTTGCCAGACCACCAGTTGCTGCACTGCCCTCGGTGGATGGAGACCCTACAATAAAGAGAGACCTTCAAGAGAgacacaGAGTGTGTGAGGAGGCAGAGTCCTCAGTGTCAGCAGGGCAGACGGAGCAGCCTGAGATTAAAGTGGGGATGTTGAACGGAGGACGAAGGATTGACTACGTACTTCAGGAAAAACCCATCGAGAGCTTCAATGAGTACCTGTTTGCCATCCAGTCTCATCTTTGTTACTGGGAATCTGAGGATACTGCTCTCCTGCTGCTAAAGGAGATCTATGACAAGCAAGGTGTGGCCTTTGAACAGCCACAACAGTAATAAAGTTTGTTGAATCTAGACTTGCTTTTTGACACGACATTAACCCGAAAGGGAGAAAATGAAGGACAGCTATCTGAGCCAGAGGCTGCACAATCCTCTTCCAGAATGCCTTACTTTCTTGGTATTATGTGACTGCCTCTCCTCCCTTGACAATTGAGACTGTTTGGCTGCAGTCAACCTTCGTTTGAGGTAGGGGTGACTTCTTGGTGCTGCCTAAACTCCCATTGCAGGACTGGGTTTGGTGTCTGATAGTTGTTTCAAATCCACCCAAACACCAGTGTCATGCTTCTGATtgcactttttcattttttattttactttgctTTACACTTTAATTTTGCTGTTGACATATCATGCATACAGCTGCAGCTGCATAATATTGAAAACATAATTATCATGAATCATGATAACCAGAAGACACTTGTAGTACTTTTTcaaatatggaaaaaaagacatcAAGTTGTGTATCAAGTAATTTATCAAATTGGATTACAAACTGGAATTTAAATGGAAATTAAGAACTAACATAATGTAATTAAGTGTGTTCAACAGGGCATCTCTGTCTGACCCTTTAAACTCAAAGTTGTCTTGACCAAGGAAGCTCTCCCTTAGTCTAACATCTTACCTTTATAAATAAGGAGGTCCGGTGGTTTCATTTGGTTGACTATAAAACGTTTAGATTCTGAAGGAAAATGAAGGTCGATATTTTGTCTCCTGGCAGCtctatttttttctgtcaacaTTAAGGCCACTTAAAACCCAAAGCTGCTACTCTTACATTTGTGCAATATAACATTTCACGGGTGTAGTCCTATACTGACCCTATCATTGAAAGTGAAGTTCATCTTGCCTTCTgacataatattttttatttcagttttatcaTATCTATACCTGTGTCTAAAAGGAGATGACCATTTGTGTCAGAAATAAAGGAGGGAGATGCAGGTGCTTGAATGGACAAGCcggttgtgtatgtatgtactgtatgtgtgtgagactaCAGTATGTATTCTTTATCCTATAATATGGTTAATTCCAAAACGGAGTGGCATCTCACATGTAGACTGTTCAAACTTGTATAATCTAAGGGCCAAATGGTACTTGTTTCATCTGTTCCTTTGTATGAAGGTATTGTAAAATCATGTTTTGTATTGCATGCACTTCTTTGTTATGTAAGAGCAGGACTGATCAACATTTTATGGTCCTGACCTAATTCTTAGGTCCCAAAATGTTCATAATTCTCATGAATCCAGCAATAAGAGAGTTGTCACATTGAAATCATATGCATTTGATTTAAAGAGCATGATACATagatttgaaaatatgtttCAAAGCATATACATTCattttatataaacatatacgcaacaaatatgaatatatcattgttaataataaatattacaaatcTGCACCATCAAGCAACATGGGGTCCAGACTATGCACTGTCAGGGCACCACTGCCCCCACCACCAAAGCTCTGCCCTATCTCAGCCCTCTGGGTGCAACATCCGCACAATACATGAATAACTTTATGGtgttcctttttcttcttttagaaATGCACATATGCAACTTGTAATGTTGCAGTTAGTACCTTGAACTTCTtcattgtgtttgtttctgcaATGTTTGTgtctaaacacagaaaaaaatccCTTATCATACTGTTTTTGCACTTGATACTAAAATGTTGATACATACCAAAAACAAATCCTTTCTGAATACATACGCTATGAATATGGTAACAAGTTGTGTGTGCCATAATAAAACATTACAagtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU83694 lncRNA upstream 24429 18320643 ~ 18321158 (+) True G62508
TU83688 lncRNA upstream 30810 18313211 ~ 18314777 (+) True G62502
TU83666 lncRNA upstream 48684 18293260 ~ 18296903 (+) False G62484
TU83667 lncRNA upstream 50281 18293260 ~ 18295306 (+) True G62484
TU83580 lncRNA upstream 216518 18128826 ~ 18129069 (+) False setbp1
TU83741 lncRNA downstream 7648 18365280 ~ 18388485 (+) True G62533
TU83734 lncRNA downstream 83730 18441362 ~ 18474731 (+) False tpcn1
TU83749 lncRNA downstream 99866 18457498 ~ 18459249 (+) True G62540
TU83769 lncRNA downstream 140331 18497963 ~ 18498301 (+) True G62557
TU83771 lncRNA downstream 140998 18498630 ~ 18498972 (+) True G62558
XM_039803094.1 mRNA upstream 17050 18326964 ~ 18328537 (+) True srrd
XM_039803095.1 mRNA upstream 17050 18326964 ~ 18328537 (+) False srrd
XM_039803089.1 mRNA upstream 33954 18306898 ~ 18311633 (+) True LOC120560506
XM_039803088.1 mRNA upstream 58305 18282370 ~ 18287282 (+) True akr1a1a
XM_039804345.1 mRNA upstream 65475 18270720 ~ 18280112 (+) True dnajb5
XM_039803520.1 mRNA downstream 8113 18365745 ~ 18382595 (+) True LOC120560725
XM_039803603.1 mRNA downstream 25317 18382949 ~ 18386253 (+) True si:ch211-113d22.2
XM_039803604.1 mRNA downstream 25320 18382952 ~ 18386253 (+) False si:ch211-113d22.2
XM_039803605.1 mRNA downstream 31479 18389111 ~ 18400741 (+) True si:ch211-204d2.4
XM_039803606.1 mRNA downstream 31479 18389111 ~ 18400741 (+) False si:ch211-204d2.4
TU83701 other upstream 14357 18330705 ~ 18331230 (+) True G62513
XR_005639579.1 other upstream 336269 17998686 ~ 18009318 (+) False cmya5
TU83072 other upstream 1811438 16533329 ~ 16534149 (+) False LOC120560897
TU83070 other upstream 1869682 16468367 ~ 16475905 (+) False LOC120560890
XR_005639530.1 other upstream 1869690 16468323 ~ 16475897 (+) False LOC120560890
TU83742 other downstream 49755 18407387 ~ 18416006 (+) False tbx5b
TU83744 other downstream 58496 18416128 ~ 18419590 (+) False tbx5b
XR_005639481.1 other downstream 303525 18661157 ~ 18681161 (+) False acacb
TU84360 other downstream 1077275 19434907 ~ 19448950 (+) False rasl10a
XR_005639482.1 other downstream 2120180 20477812 ~ 20488838 (+) False wdr31

Expression Profile