RNA id: XM_039803133.1


Basic Information

Item Value
RNA id XM_039803133.1
length 2512
RNA type mRNA
GC content 0.57
exon number 11
gene id fam189a2
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 3525307 ~ 3547333 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCTCCAATGGTAAACAAATGTACTGTAGCTTATTTAATACGTGTGTAATGGCCTCAAGTGTGCATTTTATTTCAAGATGGTATATTTTGCCTGTTTACATGTTACATGTCACACATGGCCTGCTCTGCCCCTCCCCCGTCCGGACTTTTCTCAACTCGCTGCCAAAATATGTGAAAGTCAACCCGAGCCCTTGTTATTTAAAACTGGACACCGTCATGGCAGGAGCAGCGAGCAGCTCCACTGAACTCAACGAGGATCCACCGCGCTATCCGTGAAAACAACGCCGCTGTGGAGGAACTCGAGCTCCGGGAGACTCCTTGTTTTTCGTCCTGCCCGTCGAGCCTCACATGTCGCTCCCGGTGGTGTTGCCGGGGTCTTGCTGTCCGGTTATCGGGGCTTCGCAGCTCGCTGAGCCGTCTTACCGAAACCGACCCCGTGGCTTGTCCGCCTCTTCGCGGACTGCTAGCAGCGGCTCTCGGCTGCTGCTACCCGGGCGGCCGCTGCTCTCGCTGGGCTTGTTGCAGCTGCTGCTCGGCGGCTCCATGGTGGCGCTGTGCTTTGGAGCTCTGTCCCTCAGCAACTCCCCCCCAATCCGAAACTCGTGTCCCTTCTGGGCAGGTTCCTCGGTCATACTGTCAGGCATTGTGGGCCTCACAACATGGAGAAGGCCCATGCTGTTACTGGTCAATGTGTTTGTCCtgctgtctgtggtgtgtgtgctccTTAATCTGGCTGGATTCATCCTGTGCTGCCAGGGCGCCCAGCTGGTTTCCAGTATGACCAGCTGCCAACTGagtgaGGCTGGAGATGTGTGTTACTGCTGCTCCCTCTCGTCCAGCTCCAGATGTCCCGAGGAGAAGCTGCTGGAGCTCCACCCGGCCCACTCCTGCAGCACCATGAGGATCCTGCTCAAGAAAGTGTTGTTTGCGCTGTGTGCTCTGAACGCTCTGACCACGGCCGTGTGCCTTATGGCTGCCGCCCTGAGGTACCTGCAGATCTTCACCGCCAGAACACCGTTCACGGACGAGCACAGGGCCACAGTTGAAGAAAGGGAGGAGCCGGCTCAGGTCCCAGACCCAGATGAGTTTGTGGCCCCGGCCCCGCCCCCCTCCTACTTCTCTACTTTCTACTCATACACCCCCCGCCTGGCTCGCCGGATCCTTGGGGACAGTGTGATCCCTCTCCCTCATATCTACGGGGCCCGGATCAAAGGGGTGGAGGTCTTCTGTCCTTTAGACCCCCCACCTCCATATGAGGTTGTGGCTGGAAGCTCCACCAATGCAGGCACACAGGAGCCAGAGATCGCTCTGACAGAGTTGACTATCAACCCGACTACCTCGGCACCAGGAGCCTCTGTTGGAGACAGGAGTCCCCAAATGGTATCAGCATCACCGGGCCACTTTCCGCAAGCCAAGCCCCAGCTCcagtctcctcttcctcctccttctcctcctccttctcctcctcctcctccacagccccCTTCTCCAGCACCTCCCCCCTCTCCAGCTCCGTCCCCCTGGAGGAGAGCAAGGATCCACCGCTCCACCAGCGACCCGGTGTTGATGGACCTCGCTgacagagCGCTGAGCAGCAGCGACGCTCCCCAGACCACAGACTCCTCCACCCAGACGTCCCAGCCCGCGCTGGCTGCCTGCGCCCAGGGCCAGGTCACACTGCGACGGGGCAACGGCGACAGGAGGACCCCCCGCCGGCCACGGCCCTCCTCCATGGTGGACTACCAGAGCTACcgacacacacagcagctggTCAGGAAGATCCTGGAGCAGCCGGCGGCGCAGGGCCTGGCCCCCGAGGTCCAGGAGCTGGTGGACAGCATCCGGAGTGTCCTGCAGTCAGACCAGGAGCACATGGAGGAGGCTGTACGCTGCGCCAGTTACATAGAACAGGTGTTCACTGACTCCCAGATGGGTCCCGGTCAGCCTAAACCTCCCCAGCAGCCAGCAGACAGTTCCTCCCAGACTTTCCCACGCCCCCCCCGTAGAAGGCCCGGCCTGCTGCACCTGCAGAGCTGCGGGGACCTCAGCTCCTTCACCTGTCCTACACTCGAGTCTCTGGAACCTCAAGGCAACAGTAGAAAAGTGGTGTTGAGGGCGGGGTCCCGCCCAGATCATCCCGAACGCCCCCACAGTCTGATCGGAGTCTTTAGAGAGACGGTGATTTGAAAACCAACTGTATAGAAATATGTTGTATGGCAACACAGATGGATTCTGCTTTATCTGTTGCTAAACCTCGAaaaccactgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttatgcatgtgtagttgtgtttttttttttttttttttacattttttgctcAGCTAATACAGTTTTTTATGACAATTTATCTGTGAAATACAAAAACTATGGGTGCCTTGTATTGAAACATGGTACCCAGCATTTAAAGTGCTGTATGctttgagatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU79200 lncRNA upstream 1686 3522846 ~ 3523621 (+) True G58941
TU79146 lncRNA upstream 2551 3521131 ~ 3522756 (+) False LOC120560521
TU79156 lncRNA upstream 20558 3504451 ~ 3504749 (+) True G58900
TU79155 lncRNA upstream 29408 3495104 ~ 3495899 (+) True G58899
TU79154 lncRNA upstream 35215 3489791 ~ 3490092 (+) True G58898
TU79205 lncRNA downstream 475 3547808 ~ 3556179 (+) True G58944
TU79211 lncRNA downstream 58729 3606062 ~ 3606309 (+) True G58948
TU79263 lncRNA downstream 251705 3799038 ~ 3803097 (+) True G58986
XR_005639569.1 lncRNA downstream 289974 3837307 ~ 3837679 (+) True LOC120561177
TU79324 lncRNA downstream 343712 3891045 ~ 3891853 (+) True G59033
XM_039803129.1 mRNA upstream 3743 3435165 ~ 3521564 (+) False LOC120560521
XM_039803132.1 mRNA upstream 3743 3435166 ~ 3521564 (+) False LOC120560521
XM_039803126.1 mRNA upstream 3743 3464062 ~ 3521564 (+) False LOC120560521
XM_039803125.1 mRNA upstream 3743 3464331 ~ 3521564 (+) True LOC120560521
XM_039803128.1 mRNA upstream 3743 3464332 ~ 3521564 (+) False LOC120560521
XM_039804121.1 mRNA downstream 83403 3630736 ~ 3675225 (+) True mamdc2a
XM_039803625.1 mRNA downstream 140712 3688045 ~ 3775673 (+) False arid3c
XM_039803627.1 mRNA downstream 140712 3688045 ~ 3773518 (+) True arid3c
XM_039804162.1 mRNA downstream 270989 3818322 ~ 3827427 (+) True LOC120561175
XM_039804168.1 mRNA downstream 301146 3848479 ~ 3868576 (+) False rad17
TU78941 other upstream 645563 2878401 ~ 2879744 (+) False lman2lb
TU78000 other upstream 3312937 210742 ~ 212370 (+) True LOC120560799
TU79382 other downstream 569946 4117279 ~ 4117631 (+) True G59086
TU79482 other downstream 876808 4424141 ~ 4429981 (+) True G59172
unassigned_transcript_241 other downstream 884838 4432171 ~ 4432253 (+) True trnal-aag_1
unassigned_transcript_242 other downstream 885335 4432668 ~ 4432739 (+) True trnaq-uug_2
TU79509 other downstream 982777 4530110 ~ 4531165 (+) False mrpl41

Expression Profile