RNA id: XM_039803143.1


Basic Information

Item Value
RNA id XM_039803143.1
length 4580
RNA type mRNA
GC content 0.49
exon number 24
gene id ap1b1
representative False

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 19399883 ~ 19427717 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCATGTCTCAGCTGTGCGAGCTAGAGAAGTGGCCATACGCTAGCTGACACTGACAGGCACACTGcaccagacagctagctagcattTAGCACCAGTTTCATTCATCTAACTCCTGCAAAGATGCAGGAATGGGCGAATCAGTTATGCGAGAATCGACAATTTGGATCCAAGATGACGGACTCCAAGTACTTCACCACTACCAAGAAAGGGGAGATCTTTGAGCTCAAGGCAGAGCTGAACAGTgataagaaagagaagaagaaggaggctGTGAAGAAGGTCATTGCATCCATGACAGTTGGCAAGGATGTCAGCGCTCTGTTCCCAGATGTTGTGAACTGCATGCAGACGGACAACCTGGAACTGAAAAAGCTGGTCTACCTCTACCTGATGAACTATGCCAAGAGTCAGCCAGACATGGCTATCATGGCTGTTAACACTTTTGTAAAGGACTGTGAAGACCCTAACCCTTTAATCCGGGCCCTTGCTGTTCGTACAATGGGCTGCATCCGTGTGGACAAGATCACGGAGTACCTCTGTGAGCCACTGAGGAAATGTCTGAAGGATGAAGACCCGTATGTAAGGAAGacagctgctgtgtgtgttgcaaaGCTCCATGATATCAACGCCCAGTTGGTGGAGGACCAAGGCTTCCTGGACACCCTTAAAGACCTCATCTCTGACTCCAACCCCATGGTTGTAGCAAATGCAGTGGCAGCGCTGTCTGAGATAGCAGAGTCTCACCCCAACAGTAATCTACTGGACCTGAACCCTCAAACCATCAATAAGTTGCTGACAGCTTTAAATGAGTGTACAGAGTGGGGACAGATATTCATTCTTGACTGCCTGGCCAATTACACACCTCGTGATGACCGCGAGTCCCAAAGCATCTGTGAGCGTGTCACCCCACGGCTCTCCCACGCCAACTCTGCAGTGGTTTTGTCAGCTGTTAAAGTTTTAATGAAGTTCATGGAGATGCTGCCCAAAGACTTGGACTACTATGGCACCCTGCTGAAGAAGCTCGCACCACCTCTGGTCACTCTCCTCTCTGCTGAGCCTGAGTTGCAATATGTGGCTCTTAGAAACATCAACCTCATTGTACAGAGACGCCCAGAAATCCTGAAACACGAGATGAAGGTTTTCTTTGTAAAGTATAATGACCCAATCTATGTCAAACTGGAGAAGCTGGACATCATGATTCGCCTAGCATCTCAAGCCAACATTGCCCAGGTCCTGGCTGAGCTGAAGGAGTACGCCACTGAGGTGGATGTGGACTTTGTCCGTAAAGCGGTCAGAGCCATTGGCCGCTGTGCCATCAAAGTAGAGCAATCAGCGGAGCGCTGTGTCAGCACACTGCTAGACCTCATCCAAACAAAGGTCAACTATGTGGTGCAGGAGGCCATTGTGGTTATCAAGGACATCTTCCGCAAGTACCCCAACAAGTATGAGAGTGTGATTGCCACCCTGTGTGAAAACCTGGACTCCCTGGATGAGCCGGAGGCACGTGCCGCCATGATCTGGATTGTGGGAGAGTATGCTGAGCGCATCGACAACGCTGATGAGCTGCTGGAGAGCTTTTTGGAGGGTTTTCATGATGAAAGCACTCAGGTGCAGTTGCAGCTGCTGACAGCAATCGTCAAGTTGTTCCTGAAAAAGCCCACCGAGACCCAGGAGTTAGTGCAGCAGGTGTTAAGCCTGGCCACACAGGACTCTGATAACCCAGACCTCAGGGACCGGGGCTACATCTACTGGCGTCTGCTCTCGACAGACCCAGTGGCTGCCAAGGAGGTGGTTCTGGCTGAGAAGCCCCTCATCTCTGAGGAGACGGATCTGATTGAGCCCACACTGCTGGAGGAGCTCATCTGCCACATTGGTACTCTGGCCTCTGTCTACCACAAGCCTCCCAGTGCCTTTGTTGAGGGCAGCCGTGGTGTTCAGCACAAGAGACTCCCCGGCAGTGCTGGATCTGGGGAGAGTGTTGAGAGCCCAGATACAGGTTCTGCTGCTGGAGTTTCCGAGGCACCCCCTGCTGTCATCCCATCCCAGGGAGACCTCCTTGGAGATCTGCTTAATCTGGACCTGACACCTCCTACCACCACtggaccaccaccaccacccgcTTCCTCTGGCATGCAGATGGGTGCTATGGACCTTCTTGGAGGAGGACTGGACAGCTTGATGGGGGATGAGTCTGAGCCGCCGCCCATTCCCCTGCGGACGGACACTCCTCAGTCACCTCAGCTCCCACATCAGTCCCCATCGCCCCCAGATTACAGCCCCACTGACGTTGGTCCAGGGGACCACACTGGACTACTTGGCGGAGACCTTGGAGGAGGGCCTGCTATGGGGACAGGTTTCGGTGCTCCTCCAGCTGCCATGCCAGCTTCTTTCAACGTCCCTGTTAGTGGCGGTCTGGATGACCTGTTTGATCTTGCAGGTGGAGTTGGTATGCCTATGGGAGCCTTCAACCCCCCTAAAACAGTTTGGCTTCCAGCCATGAAGGCCAAGGGTCTGGAGATATCGGGCACTTTTGTCCGCCGTGCTGGGGTCATCCAAATGGAGATGACCCTCACTAATAAAGCTATGAGTGTCATGACTGATTTTGCCATCCAGTTTAACAGAAACAGCTTTGGTCTTGCTCCGGCTGGTCCCCTCCAAGTACTCACTCCTCTTAGCCCAAACCAAAGTATTGAAGCAGCCCTTCCCCTCAGTACTGTAGGACCTGTCATGAAGATGGAGCCTCTCAACAACCTTCAGGTGGCTGTTAAGAACAACATTGACGTATTCTACTTCAGCTGCCAGTATCCCATCAGCATGCTGTTTGCGGAGGACGGGAAGATGGAGCGACAGGTGTTCCTGGCCACATGGAAAGACATTCCTAATGACAACGAGTCCCAGTTTCAGATCAAAGACTGCCATCTCAACTCAGATGCAGCCTCCAACAAACTGCAGGGTAGCAACATCTTCACCATAGCCAAGCGTACAGTTGAGGGTCAGGACATGCTGTATCAGTCCATGAAACTCACCAATGGCATTTGGGTGCTTGCAGAGCTCagggtgcaggcagggaacccAAATTACACGATCTCTCTTAAGTGCAGAGCTCCAGAGGTTTCCCAGTGCGTTTTCCAGAACTACGAGATGGTGCTGAAGAACTGAAACCACCCACCGACCAGGCCGCTGCTCTCACAGACTCCTGGCACcttctcctgctctccctcacCTGACCCACGGACCATATTACAGCCTCATACAGTGCAGGAGCCACTTCCTGCTGTGTTGGCACTCTGTATGTCAATCCAGCTGTTTAAATTGGGATGGTTAATGATTTTTGTTCCATTTTGACCCGTCACtggttgtttttctttcctaaGACTGAAGAAAATCCTGGTTGACTGTCTTGGCTAGGCTTATCCTGTCCCCGGTTATGTATGTTTTGTTATACAAAAGTTTCAGTTTCAGGACATTATCTCATAATAAATTTTTTGATTGAACACTTTCACATTGAGCTGGTCCTCCACTTTGGGATGACCTGTATACTTTTGGGGACAGATGGCTGTTTTCCTGTGTCTGCATGAGGCTCTTTAATCATTATCTAGCCCCACTTCTCTGCAAATTGGAGTCTATTTTTAGCGTCTGCAATCAGCAGGTCAATCATCACtgtctgcatatttatttagGGTACTTTCAATTAAAATGCAACAGAAAAAAGGCTTTAATTCTCCCTACCCGTGCCCCTGTGTGAAGTGGCTGGATGGGCCTTTAAAAGAGACCCATAGATACTTACAAACTACATCATTGTTGTCTTTGTCATTTGATAGTTTTCTTTAGTGTCTGCGGTTAGCAGTGGGATCTGATCCTCTTCTGTCCCTGAAAGCAGAATGTATGCTGTTTGTTGGTGTGCGTTTCTTTAATTTTTCCATCAATATctggacattttatagactagcTGCAGTCGTCCACTGCCTGCTCTCTTACTTAGTCATTCCATggtttgatttgtgtttgtagtATTGTTAGTGTTCATGTGGCAAACTGTGAGAGCCTCAGGTGATGAGGATTTTGTATTTGCTGCTTCCCCCTGCATCAGTGACAGCCACTCGGGCTCTCTCTGCCACTTTGCTCTCTCTGTACCCTCATCGCAGCCTCTCCAGTACCATGGCCACCCGAGATGAAGGCTCAGGTGAGAGAACTCTAAACTTATGATGCTATGGTTTGTAACACTGAGTAATAAGTGTACATGTAGGTAAGCACACTGTCTACAGCCAGTGTCAATGTTTTACCTGCAGGCTCGACTAGATGAATTTGATTCCTTTTCAGAGTCGTTACACTGAAGCTCTTTTTATTGGCTCTACAGGATGTATGCGCCCACGTTAACACCTTGTAAGATTACAACAGAGGTGGCTGTGTATTGCTagcgtgtgtctttgtgtggtgACGGCTGATTCGTATgaaatgctgtaaaaaaaaaaattatatatatataaaaaatcaaATGTTTAATCAGATGTTTTTGATTGACCTGATTTTGTTCATTGTGTGTACATCAAATAACTATTAAAAGTCTTGATAAATTCCCA

Function

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0006897 endocytosis biological_process
GO:0035315 hair cell differentiation biological_process
GO:0048839 inner ear development biological_process
GO:0050974 detection of mechanical stimulus involved in sensory perception biological_process
GO:0048884 neuromast development biological_process
GO:2000649 regulation of sodium ion transmembrane transporter activity biological_process
GO:0030131 clathrin adaptor complex cellular_component
GO:0008565 obsolete protein transporter activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005639511.1 lncRNA upstream 246585 19151533 ~ 19153584 (+) True LOC120560789
TU84161 lncRNA upstream 313307 19084934 ~ 19086862 (+) True G62836
TU84159 lncRNA upstream 313307 19085914 ~ 19086862 (+) False G62836
TU84163 lncRNA upstream 318515 19081080 ~ 19081654 (+) False tmem119a
TU84099 lncRNA upstream 417546 18966083 ~ 18982623 (+) True G62796
TU84387 lncRNA downstream 121693 19549410 ~ 19554906 (+) True G63005
TU84391 lncRNA downstream 127666 19555383 ~ 19562350 (+) True G63007
TU84393 lncRNA downstream 127666 19555383 ~ 19562350 (+) False G63007
TU84401 lncRNA downstream 147844 19575561 ~ 19581840 (+) False G63015
TU84402 lncRNA downstream 147844 19575561 ~ 19633642 (+) True G63015
XM_039803802.1 mRNA upstream 916 19376194 ~ 19399253 (+) True gas2l1
XM_039802293.1 mRNA upstream 27560 19364006 ~ 19372609 (+) False ewsr1b
XM_039803079.1 mRNA downstream 2684 19430401 ~ 19448946 (+) True rasl10a
XM_039803078.1 mRNA downstream 26531 19454248 ~ 19504544 (+) False osbp2b
XM_039803072.1 mRNA downstream 26593 19454310 ~ 19504544 (+) True osbp2b
XM_039803074.1 mRNA downstream 26710 19454427 ~ 19504544 (+) False osbp2b
XM_039803073.1 mRNA downstream 26712 19454429 ~ 19504544 (+) False osbp2b
XR_005639481.1 other upstream 719008 18661157 ~ 18681161 (+) False acacb
TU83744 other upstream 980579 18416128 ~ 18419590 (+) False tbx5b
TU83742 other upstream 984163 18407387 ~ 18416006 (+) False tbx5b
TU83701 other upstream 1068939 18330705 ~ 18331230 (+) True G62513
XR_005639579.1 other upstream 1390851 17998686 ~ 18009318 (+) False cmya5
TU84360 other downstream 7190 19434907 ~ 19448950 (+) False rasl10a
XR_005639482.1 other downstream 1050095 20477812 ~ 20488838 (+) False wdr31
XR_005639483.1 other downstream 1050095 20477812 ~ 20488838 (+) False wdr31
TU85087 other downstream 1248700 20676417 ~ 20677916 (+) True G63480
XR_005639510.1 other downstream 2161159 21588876 ~ 21598799 (+) False LOC120560787

Expression Profile