RNA id: TCONS_00074592


Basic Information

Item Value
RNA id TCONS_00074592
length 814
lncRNA type retained_intron
GC content 0.44
exon number 3
gene id XLOC_038015
representative True

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 35631440 ~ 35633827 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGTGTtcagttttggaaaaaaaagatgGCAGCACTTTGGAGTTTAGTGCTACTTTGTATCACTAGTCGTTTATGTGCTGCAAATACTTCTTTACAAAGTAAAGAAGTGTTCCAATGGCCTGAACAACATCTGTTGGGTTTGGGTGTGAGAGAGCTTCCATCTCAAGCAGAACCTGTTCAGAAGTGTGATGTGCAAGATGAGGATAAGGTGCAGTGTGGAGAGCCTGGCATTTCTCCTGAAGACTGTAATGTTTTAAACTGCTGTTTTGATGGAAAACAGTGCTACTATGGCAATACAGTAACTGTCCAGTGTACAAGAGATGGGCAGTTTGTTGTTGTGGCCTTGAGAGATGCAACTATTCCAAGAATAAGCTTGGAGTCCATCAGCCTTTTGGGAGGAAGTGATCCTCCTTGTGCCCCCGTTGATGCCACTAAAGCTTTTGCCATCTACCAGTTCCCTGTCACTGCTTGTGGCACCACAGTGATGGTTGGTACTGACTGTGAGGTTTAGGTGGGCCTCATGTGCTttgttagtaattttttattttggtaacgTGCTACAGGTGGAAGATGACTTCCTAATCTATGAAAACAGAATGACATCTGTATATGAAGTAAATGTTGGACCTCTAGGCTCTATCACAAGAGATAGCCATTATGAGCTCCTCTTCCAGTGTAAATATTCACGCAGCAGTTTTGAAGCGCTGGTTGTTGAAGTCAACCctgttcctcctcctcttcctgtGGCTGCACTTGGACCTCTTAGAGTGGAGCTTAAACTGGCTAACGGGCAGTGTTTTCTTAAGGGATGTGTG

Function

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-060818-3 No description available

Ensembl:

ensembl_id ENSDART00000140356

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00075004 lncRNA downstream 471288 35154830 ~ 35161005 (-) True XLOC_038013
TCONS_00075419 lncRNA downstream 471678 35154055 ~ 35160615 (-) False XLOC_038013
TCONS_00074574 lncRNA downstream 716905 34908935 ~ 34915388 (-) True XLOC_038008
TCONS_00074570 lncRNA downstream 754921 34874903 ~ 34877372 (-) True XLOC_038006
TCONS_00074565 lncRNA downstream 819410 34773621 ~ 34812883 (-) True XLOC_038001
TCONS_00075420 lncRNA upstream 47311 35680968 ~ 35832754 (-) True XLOC_038016
TCONS_00075005 lncRNA upstream 357007 35990664 ~ 35995392 (-) True XLOC_038019
TCONS_00075421 lncRNA upstream 766254 36399911 ~ 36413250 (-) True XLOC_038021
TCONS_00075006 lncRNA upstream 1111878 36745535 ~ 36746819 (-) True XLOC_038022
TCONS_00075422 lncRNA upstream 1293169 36926826 ~ 36930979 (-) False XLOC_038028
TCONS_00074589 mRNA downstream 74896 35170335 ~ 35557397 (-) False XLOC_038014
TCONS_00074590 mRNA downstream 297651 35170768 ~ 35334642 (-) True XLOC_038014
TCONS_00074588 mRNA downstream 477204 35028297 ~ 35155089 (-) False XLOC_038013
TCONS_00074584 mRNA downstream 562516 35026415 ~ 35069777 (-) False XLOC_038013
TCONS_00074587 mRNA downstream 562648 35028297 ~ 35069645 (-) False XLOC_038013
TCONS_00074594 mRNA upstream 239041 35872698 ~ 35875051 (-) True XLOC_038018
TCONS_00074600 mRNA upstream 1262600 36896257 ~ 36924388 (-) True XLOC_038027
TCONS_00074602 mRNA upstream 1707583 37341240 ~ 37366881 (-) False XLOC_038032
TCONS_00074604 mRNA upstream 1707770 37341427 ~ 37367477 (-) False XLOC_038032
TCONS_00074603 mRNA upstream 1707770 37341427 ~ 37367477 (-) True XLOC_038032
TCONS_00074567 other downstream 780489 34848860 ~ 34851804 (-) True XLOC_038004
TCONS_00074564 other downstream 879134 34753044 ~ 34753159 (-) True XLOC_038002
TCONS_00074544 other downstream 1710722 33921464 ~ 33921571 (-) False XLOC_037985
TCONS_00074543 other downstream 1711269 33920932 ~ 33921024 (-) True XLOC_037984
TCONS_00074537 other downstream 1847786 33783555 ~ 33784507 (-) False XLOC_037982
TCONS_00074593 other upstream 67998 35701655 ~ 35701772 (-) True XLOC_038017
TCONS_00074595 other upstream 485303 36118960 ~ 36120526 (-) True XLOC_038020
TCONS_00074596 other upstream 1127232 36760889 ~ 36761294 (-) True XLOC_038023
TCONS_00074597 other upstream 1131966 36765623 ~ 36766028 (-) True XLOC_038024
TCONS_00074598 other upstream 1136700 36770357 ~ 36770663 (-) True XLOC_038025

Expression Profile

//