RNA id: XM_039803163.1


Basic Information

Item Value
RNA id XM_039803163.1
length 1603
RNA type mRNA
GC content 0.44
exon number 7
gene id LOC120560544
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 4696603 ~ 4703041 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGACAGGTAGGGACCTCGCTCAATTGTTGCAGGAAGTTGGAAGTTGCGCATGAAGACTAGCTGAGCACTATGGCGCCTCTAGATCTGGATAAATACGCAGAGATTGCAAAACAGTGTAAATACCTCCCAGAAAATGACCTCAAGAGGTTATGTGACTACGTGTGTGACCTTCTGCTGGAGGAGTCCAACGTTCAGCCCGTTTCCACTCCTGTGACAGTATGTGGTGACATACATGGACAGTTTTATGATCTTTGTGAACTCTTCCGAACTGGCGGCCAGGTTCCGGACACAAATTACATCTTTATGGGTGACTTTGTCGACCGAGGATATTACAGTTTGGAGACGTTCACCTACCTGCTGGTACTGAAAGCCAAATGGCCCGACCGCATCACACTTCTACGTGGAAACCACGAGAGCAGACAGATCACCCAAGTTTATGGCTTTTACGATGAGTGCCAGACCAAGTATGGGAATGCAAATGCCTGGCGTTATTGCACCAAAGTGTTCGATATGTTAACAGTTGCGGCTctGATGGACGAGCAGATCCTGTGTGTCCACGGAGGCCTCTCCCCAGACATAAAAACTCTTGATCAGATTCGAACCATTGAGCGGAACCAGGAGATCCCCCACAAAGGAGCGTTCTGTGACCTGGTGTGGTCAGACCCTGAAGACGTGGACACTTGGGCCATCAGCCCCAGAGGAGCTGGTTGGCTCTTTGGTGCAAAGGTCACAAATGAGtttgtccACATCAACAACCTGAAGCTGATCTGCAGGGCACATCAACTTGTCCACGAAGGCTACAAGTTCATGTTTGACGAGAAGCTGGTCACAGTGTGGTCGGCTCCTAACTACTGCTATCGCTGTGGCAACATCGCCTCCATCATGGTCTTCAAAGACGCTAACACAAGAGAGCCAAAGCTCTTCCGAGCAGTGCCTGACTCTGAAAGAGTCATTCCACCGCGAACAACAACACCCTATTTCCTGTaagcacataaaaaaacagcGCAGCCATTTGTTCAGTGCACAGATGTTTACTGGGACAGTGGCATCAGCACTTGTGAACCCATATGAATTTTGTATTGTGCATTTTGAGTATTTGCAGTGCATTTCTTAGTGCCAACTGTCAATTGTTATTCCCACTCTGGCATTTAATGTCGTTATTCTGCAGCTTAAATCCCACTGAGATAATGCAGCAACAGAAGTTGGCCCTAGCAGAATTGATGTGCTGTTGAAATGTTACAGAGGAAGGattaaaatgacaaaagtcAACTGACCCTTGTAAGATGTTCATATTTATAAATCTCGATTTTTACTTTACCATAGAAATTCATTCTGCTGAGCAAATTGCAGGTGCAGTATTATATACAAtgtttgatttcattttgtTATGGTAATGCATTAGAGCTGGATGTTAGATAGTAAAgcactgcacacaaacacatctatTCCGACAAATTTCAATGGCGTTATAGATTTATTGTTATCATATGATCTTATAAATAAACATGTAAACCTTAGAGTTGatgtgtaaaaaatgtactATATCCATTCGAGATTTCTGTATTAAGCCTGTGGTacctttttaaagtgctcatattctgct

Function

GO:

id name namespace
GO:0016311 dephosphorylation biological_process
GO:0004721 phosphoprotein phosphatase activity molecular_function

KEGG:

id description
K15498 PPP6C; serine/threonine-protein phosphatase 6 catalytic subunit

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU79601 lncRNA upstream 27748 4644632 ~ 4668855 (+) True G59247
TU79594 lncRNA upstream 72449 4623515 ~ 4624154 (+) True G59240
TU79568 lncRNA upstream 78570 4572152 ~ 4618033 (+) False LOC120560573
TU79556 lncRNA upstream 138538 4557005 ~ 4558065 (+) True G59218
TU79554 lncRNA upstream 140949 4554021 ~ 4555654 (+) True G59217
XR_005639477.1 lncRNA downstream 195817 4898858 ~ 5053215 (+) True LOC120560386
XR_005639476.1 lncRNA downstream 195817 4898858 ~ 5053215 (+) False LOC120560386
TU79672 lncRNA downstream 198942 4901983 ~ 4902190 (+) True G59296
TU79673 lncRNA downstream 208029 4911070 ~ 4911289 (+) True G59297
TU79676 lncRNA downstream 261855 4964896 ~ 5005173 (+) False G59299
XM_039803219.1 mRNA upstream 78635 4571383 ~ 4617968 (+) True LOC120560573
XM_039803221.1 mRNA upstream 78635 4571383 ~ 4617968 (+) False LOC120560573
XM_039803222.1 mRNA upstream 78635 4571384 ~ 4617968 (+) False LOC120560573
XM_039803220.1 mRNA upstream 78635 4571384 ~ 4617968 (+) False LOC120560573
XM_039803224.1 mRNA upstream 78635 4571384 ~ 4617968 (+) False LOC120560573
XM_039803622.1 mRNA downstream 1676 4704717 ~ 4735322 (+) False golga1
XM_039803621.1 mRNA downstream 1676 4704717 ~ 4735322 (+) True golga1
XM_039803619.1 mRNA downstream 1676 4704717 ~ 4732698 (+) False golga1
XM_039803620.1 mRNA downstream 2855 4705896 ~ 4735322 (+) False golga1
XM_039804473.1 mRNA downstream 34899 4737940 ~ 4741131 (+) True rpl35
TU79509 other upstream 165438 4530110 ~ 4531165 (+) False mrpl41
unassigned_transcript_242 other upstream 263864 4432668 ~ 4432739 (+) True trnaq-uug_2
unassigned_transcript_241 other upstream 264350 4432171 ~ 4432253 (+) True trnal-aag_1
TU79482 other upstream 266622 4424141 ~ 4429981 (+) True G59172
TU79382 other upstream 578972 4117279 ~ 4117631 (+) True G59086
TU79671 other downstream 350225 5053266 ~ 5351131 (+) False fbrsl1
TU79728 other downstream 745095 5448136 ~ 5453494 (+) False golga3
TU79729 other downstream 745095 5448136 ~ 5453494 (+) False golga3
TU79733 other downstream 792114 5495155 ~ 5497754 (+) True G59347
TU79987 other downstream 1971876 6674917 ~ 6677484 (+) False kat6a

Expression Profile