RNA id: TCONS_00075420



Basic Information


Item Value
RNA id TCONS_00075420
length 316
lncRNA type antisense_over
GC content 0.50
exon number 4
gene id XLOC_038016
representative True

Chromosome Information


Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 35680968 ~ 35832754 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence


CTGCAGGTACACTAGCAACTCAATTTACAGAGAGGAGAAATAATGGCTTCGGGAGCACTGTTCTGAAGACACTACACCTTGTTGCCGGAGGGAACACATGCACGGGGTTGGATAATGATGACCAGATGAACCAGGGGAGATATGGTAGCCAGGCACACAGATAGACGAACTCTGGGACATTGACAACAAAAAGAGGAGGGACCAGGAGTAACCACACTAGGATGGAAAGACGCAGACACTGGAGAACATACGAGAGAGTTCGCTGGCgcacatggtgagctactggacaaactggtaacagcgggaaaccCATCCA

Function


GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TCONS_00074592 lncRNA downstream 47311 35632293 ~ 35633657 (-) True XLOC_038015
TCONS_00075004 lncRNA downstream 519963 35154830 ~ 35161005 (-) True XLOC_038013
TCONS_00075419 lncRNA downstream 520353 35154055 ~ 35160615 (-) False XLOC_038013
TCONS_00074574 lncRNA downstream 765580 34908935 ~ 34915388 (-) True XLOC_038008
TCONS_00074570 lncRNA downstream 803596 34874903 ~ 34877372 (-) True XLOC_038006
TCONS_00075005 lncRNA upstream 157910 35990664 ~ 35995392 (-) True XLOC_038019
TCONS_00075421 lncRNA upstream 567157 36399911 ~ 36413250 (-) True XLOC_038021
TCONS_00075006 lncRNA upstream 912781 36745535 ~ 36746819 (-) True XLOC_038022
TCONS_00075422 lncRNA upstream 1094072 36926826 ~ 36930979 (-) False XLOC_038028
TCONS_00075423 lncRNA upstream 1094072 36926826 ~ 36940479 (-) False XLOC_038028
TCONS_00074591 mRNA downstream 47141 35631440 ~ 35633827 (-) False XLOC_038015
TCONS_00074589 mRNA downstream 123571 35170335 ~ 35557397 (-) False XLOC_038014
TCONS_00074590 mRNA downstream 346326 35170768 ~ 35334642 (-) True XLOC_038014
TCONS_00074588 mRNA downstream 525879 35028297 ~ 35155089 (-) False XLOC_038013
TCONS_00074587 mRNA downstream 611323 35028297 ~ 35069645 (-) False XLOC_038013
TCONS_00074594 mRNA upstream 39944 35872698 ~ 35875051 (-) True XLOC_038018
TCONS_00074600 mRNA upstream 1063503 36896257 ~ 36924388 (-) True XLOC_038027
TCONS_00074602 mRNA upstream 1508486 37341240 ~ 37366881 (-) False XLOC_038032
TCONS_00074604 mRNA upstream 1508673 37341427 ~ 37367477 (-) False XLOC_038032
TCONS_00074603 mRNA upstream 1508673 37341427 ~ 37367477 (-) True XLOC_038032
TCONS_00074567 other downstream 829164 34848860 ~ 34851804 (-) True XLOC_038004
TCONS_00074564 other downstream 927809 34753044 ~ 34753159 (-) True XLOC_038002
TCONS_00074544 other downstream 1759397 33921464 ~ 33921571 (-) False XLOC_037985
TCONS_00074543 other downstream 1759944 33920932 ~ 33921024 (-) True XLOC_037984
TCONS_00074537 other downstream 1896461 33783555 ~ 33784507 (-) False XLOC_037982
TCONS_00074595 other upstream 286206 36118960 ~ 36120526 (-) True XLOC_038020
TCONS_00074596 other upstream 928135 36760889 ~ 36761294 (-) True XLOC_038023
TCONS_00074597 other upstream 932869 36765623 ~ 36766028 (-) True XLOC_038024
TCONS_00074598 other upstream 937603 36770357 ~ 36770663 (-) True XLOC_038025
TCONS_00074599 other upstream 949793 36782547 ~ 36782665 (-) True XLOC_038026

Expression Profile


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