RNA id: XM_039803167.1


Basic Information

Item Value
RNA id XM_039803167.1
length 1716
RNA type mRNA
GC content 0.44
exon number 9
gene id mtx3
representative False

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 18012302 ~ 18017408 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCTCGTGACGTCACCAGCTCCTTGCACGGATCAAAACATGGCGGCTGCCATGGAGCTGAGATGCTGGGGAGGAGACTGGGGTTTGCCTTCTGTCCACACCGAATCTCTGATAGTTCTGGCATATGCCAAGTTTTCTGGGGCAAAAGTCACGGTTTCTCCTATAGACTGGACATGGAAAACTCTAACAGCCACAGTCCCAGAGTTGCTATGTGGAGACTCTGCAGTTCAGGAACCAGCACAGATTCTCAACTTCCTGAGGAAACGGagGTTTAATGCAGACTATGAACTGACAGCCAGACAAGGAGCAGACACCATGGCATACATCGCTCTGCTTGAAGAGAAACTACTTCCAGCTCTGTTGCACACTTTCTGGGTGGATGCAGAAAACTACGCCAATCTGACACGGCCATGGTTTGCCTCACGCTCGCCATTCCCTCTTAACTTTCTCGTCCCTAGTCGCCATGCCAACACTGCCCTCTCCCGTATCCTTCTAACCAAAGGAGAGGCGCCGCTACACAGAATCACAGAGGTGGAGGGAAAGATCTACAGCGATGCTAAAGAGTGCCTGAATCTCCTCTCCTACAGACTGGGAACTGCAAACTACTTTTTTGGCAACTCGCCGACCAGTCTGGACGCCTTCGTGTTTGGTTTTGTGGCTCCACTTTACAAAGCCAGTCTCCCAAGTAGCCCTCTGCAGAGTCACCTCAGACAGCTGGATAACTTCACAAGCTTCTGTGACAACATCCTCGCAGTCTACTTCAGCTCAGACCAACCTTGTCCTCCCCCACCTGTTCAGGAAAGAATGGATGCCAACCTCCAGAAACTAACTCAGCTTGTAAACAAAGAGTCCAACATGATCGAGAAGATGGATGACAACCTTCGCAGCAGCCCTCAGCACAAACCCCACAGACCAGAGCCCAAACACAGTCTGGCCAGTGAGAAGAGCTCTACTCCTGCCTAAGCCCTGACTTGTCAACCCTGGTCCAGCTTTATGAATGGAGGAGGAACCGCCTGTAGATGTGCAGTTCTGAATCTGACATCAAAAACATTTCATCCAGCTGAACTAtagtttgaatgaaaaataactttaataataataaagggaAGTATGACTACATaatttttaaagagaaaaataatGATGATAGATTTCAAAGATGTTGGTctgaaagaaaagggaaagtgCATGTGTGAGGTTTTTAAAGAGGTTGAGCGCATGTATGTGGTTATGGATGGAATGTTTGATGCAAAAGACACAAAGTGAAATGGAAAGCTGAAGGAAATGAAAGTTCCCCATGCACACATCCTTCCTCATATCCACTGTAAATATGTTCTGTAAATTCTAATGGCATTTAAAATAGTGTAATGTACAGAATGTACGCAGTCATGACTATAGAAATATCCCATCACTTATTTTGCTTTGCTCTTACCTCTGCATTGTATAGTTGTAAatatcttttacttttttttattttcagcttCTAAACACTCTTTATTAGCTACACAGGGGTGATTTATACACACTATTAACTTATTCATGCAAAACACGTGGGactaatgtgtgtttgtgtgtgagttttCCCAAGGACTATCCGTTACAAGTGTCTTTCAATTATAGTTCATTATGCAAGATATTCTGTCATTAACGATCCACTCTCTGTTGTTGCCATAGATTTccataactaactaactaactaactatatatatatatatat

Function

GO:

id name namespace
GO:0006626 protein targeting to mitochondrion biological_process
GO:0005741 mitochondrial outer membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU83475 lncRNA downstream 78836 17931742 ~ 17933468 (-) True G62339
TU83469 lncRNA downstream 85349 17914926 ~ 17926955 (-) True G62333
XR_005639419.1 lncRNA downstream 112477 17896791 ~ 17899827 (-) True LOC120560086
XR_005639420.1 lncRNA downstream 112478 17896791 ~ 17899826 (-) False LOC120560086
TU83447 lncRNA downstream 169852 17841719 ~ 17842452 (-) True G62318
TU83567 lncRNA upstream 37843 18055251 ~ 18055851 (-) False G62399
TU83570 lncRNA upstream 37843 18055251 ~ 18056143 (-) True G62399
TU83626 lncRNA upstream 217197 18234605 ~ 18235686 (-) True G62452
TU83677 lncRNA upstream 286749 18304157 ~ 18304356 (-) True G62493
TU83781 lncRNA upstream 312195 18329603 ~ 18329892 (-) True G62567
XM_039803327.1 mRNA downstream 23969 17967578 ~ 17988335 (-) False homer1b
XM_039803328.1 mRNA downstream 23969 17974732 ~ 17988335 (-) False homer1b
XM_039803326.1 mRNA downstream 28725 17967578 ~ 17983579 (-) True homer1b
XM_039803594.1 mRNA downstream 67754 17940602 ~ 17944550 (-) True cenph
XM_039803593.1 mRNA downstream 71764 17935376 ~ 17940540 (-) True dimt1l
XM_039803165.1 mRNA upstream 12031 18029439 ~ 18050457 (-) True serinc5
XM_039803154.1 mRNA upstream 42152 18059560 ~ 18065397 (-) True cdk7
XM_039802610.1 mRNA upstream 129712 18147120 ~ 18162327 (-) True LOC120560293
XM_039802611.1 mRNA upstream 145698 18163106 ~ 18170758 (-) True erap2
XM_039802613.1 mRNA upstream 156035 18173443 ~ 18182905 (-) True rgmb
unassigned_transcript_262 other downstream 52420 17959813 ~ 17959884 (-) True trnaq-cug_5
XR_005639516.1 other downstream 116407 17859355 ~ 17895897 (-) False pip5k1bb
XR_005639575.1 other downstream 407184 17598088 ~ 17605120 (-) False LOC120561236
TU83669 other upstream 275848 18293256 ~ 18296678 (-) False LOC120560503
XR_005639489.1 other upstream 281493 18298901 ~ 18303862 (-) False fancg
TU83796 other upstream 360194 18377602 ~ 18380502 (-) True G62580
TU83799 other upstream 365597 18383005 ~ 18386269 (-) True G62582
TU83818 other upstream 422501 18439909 ~ 18442825 (-) False iqcd

Expression Profile