RNA id: XM_039803178.1


Basic Information

Item Value
RNA id XM_039803178.1
length 3067
RNA type mRNA
GC content 0.50
exon number 30
gene id ipo11
representative False

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 23754325 ~ 23906456 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GACGTCATCAGCGCGCGCCTGCTGTGTTGCTCGCGCCATTCCTACAAACGTGTGTGTTTCCCATCTCCCATTACATTACAGCCGCTGCTACAGcacagattttgttttttaaccgtCGTTCTTTTAGATATATCCAGCTATGGATATGGACGGTGCCAGTTCAGTGGTGCTGCAGGCCTTAACCCAAGCTACCAGTCAGGACACAGCTGTGCTGAAACCTGCCGAGGAGCAGCTCCGACAGTGGGAGACGCAGCCAGGTTTCTACTCTGTCCTTCTGAATATCTTCAATAACCACATGCTCGATGTGAACGTCAGGTGGCTGGCTGTGCTGTACTTCAAAAATGGCATTGACAGATACTGGAGGAGAGTAGCGCCTCATGCTTTATCAGAAGAGGAGAAGACATCATTGCGTGCTGGCCTCATCACAAATTTCAATGAACCGGTCAATCAGATAGCGACCCAGATTGCAGTACTGATAGCCAAGGTGGCCCGTCTGGACTGCCCCAGGCAATGGCCAGAGCTCATTCCCATTCTTCTCGAGTCCGTGAAGGGTCAGGATGGCTTGCAGCAGCACAGGGCACTGCTAACCTTCTATCATGTCACCAAAACCCTAGCATCCAAACGTCTGGCGCAGGACAGACGACTTTTCCAGGATCTGGCGTCGGGAATCTACAGCTTTGCATGCTCCCTGTGGAGCCATCACACCGACTGCTTCCTCCAGCAGATCTATGCCAGAGATGAGGCTGGAGCGCTCAGCTCACTGGAGAGGACGCTGCTCTCTCTTAAAGTGCTTCGCAAGTTGACAGTCTTCGGATTTCAAGAGCCACAACAGAATATGGAAGTGATGGGTTTCCTGAATGCAGTGTTTGAGAGGCTAAAACAGTTCTTGGAATGCTGTCGGCAGGTTGGTCCAGACAGCACATGTAGAGAAAAGCTGGAGAAGATAATCATACTGTACACTAAAGTTTTGTTAGATTTCCTGGAGTACCATCCGTGTGCATTTATACCCCTAATCCAGCGTTCTCTGGAATTTGCCGTCAGCTACCTGTTTACACCTGCTGGGGAGGGAGTGACATTTGAACGCTTTATTGTTCAGTGCATGAACCTCATCAAGATCATTGTTAAGAATGATGCCTACAAACCTTCCAAAAACCTTGATGACAGTAAACCAGAGAGTCTGGAGGCTCACAAGATCAAGACAGCTTTCTTTACACACCCCACACTGACAGAGATTGGACGCCGGCTCGTCTCACACTACTTCCTTCTCACAGAGGAAGAGCTGGCAATGTGGGAAGAGGACCCAGAGAGCTTTGCTGTTGAAGAAACAGGCGGTGACTCTTGGAAATACAGTTTACGGCCCTGTACAGAAGTATTGTTCCTGGATATCTTCCACAACTACAACCAGACACTGATACCGGTGCTACTGGATATGGTTCAGAATCTCCAGGGCCCAACCAATGTGGAAGACTCCGTTCAGTTGCGAATGAAGGATGCAGTATACAATGCAGTTGGACTGGCAGCTTATGAGCTCTTTGACAACGTGGACTTTGACCAGTGGTTCAAGAATCAGCTTCTTGGGGAGCTGCAAGTAGGCCATCACAGATACAAGTTGATTCGCCGACGAGTCATCTGGCTAATAGGACAGTGGATCTCTGTCAAGTTCAAATCTGACCTTCGACCTTTACTCTACGAGGTCATCCTGAGCCTCATGCAGGATCCCGACTTGGTGGTGCGGATTGAGACAGCTACAACCCTGAAGCTCACTGTTGATGACTTTGAGTTCCGGACAGAGCAATTCCTCCCAtACCTGGAGTCTATCTTTGGGCTGCTCTTCCAGTTGTTGCAACAGGTGACAGAGTGCGACACTAAAATGCAGGTGCTCCATGTCATTTCCTGTGTCATCGAGAGAGTGAACATCCAGATTCGGCCATACGTAGGCTGTCTGGTGCAGTACCTGCCCCTGCTCTGGAAGCAATCTGAAGAACACAACATGCTACGATGTGCCATCCTCACTACACTCATTCACCTGGTACAGGGTCTGGGGGCAGAGTCTAAGAATCTGTACCCTTTCCTTCTTCCTGTCATCCAGCTGAGCACCGATGTTTCCCAGCCGCCGCATGTGTATTTGCTGGAGGATGGACTAGAGCTTTGGTTGGTGACTTTGGAGAACAGCCCAGCCATCACCCCGGAGCTGCTCCGAATTTTCCAGAACATGTCAGCTTTGCTGGAGTTGAGCTCCGAGAACCTGCGCACCTGCTTTCAGATTGTAAATGCCTACTTATATTTGTCTGCCACAGACTTTCTtcagAACTATGCAGATTCATTGTGTCGAGCTTTCTGCAATCTGCTGAAAGACATCACGAATGAGGGACAGGTCCAAGTGCTCAAGGTGGTAGAGATAGCTTTAAAGGTTAGCCCCATACTGGGAGCCCACATGTTCCAGCCCTTGCTGCCACTTGTCTTCAGAGGAATTGTGGACGGCGAGaGATATCCTGTGGTGATGTCGACCTACCTAGGAATCATGGGCCGCATCCTTCTCCAGAACTCcagtttcttctcctctctgctcACTCAAATGGCTTCTGAGTGTAGCCAGAAGATGGACCAGTTGTTGGGCAGTGTTATAGAGATGTGGGTCGACCGCATGGACAACATCACTCAGCCAGAGAGGAGGAAGCTATCGTCGCTGGCTCTGCTTTCCCTCCTACCATCTGACAACAGTGTGATCCAGGACAAGTTCTGTGGCATCATCAACATCTCCGTTGAGGCACTGCATGATGTAATGACAGAAGATTCTGAAACGGGCACCTTCAAAGACTGCATGCTGATGAGCCATTTTGAGGAGCCCAAGCTGAGTGACGATGAGGAGCCACCAACTGAGCAGGACAAGAGGAAGAAACTGTTGGCTTTGGAGGACCCGGTGCACAGCGTTTCCCTCCAGCAGTTTGTCTATGAGAAGCTGAAGGCGCAGCAGGCCATGATGGGGGACCAGGGCTTCGGGGTCCTGATGGAGACCGTGGACACAGAGCTCGTCAGGCAGCTCCAGGAGTTCCTCCAAGGCCTCTGA

Function

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0005634 nucleus cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU85904 lncRNA upstream 4490 23744939 ~ 23749835 (+) True G64130
TU85900 lncRNA upstream 19032 23734824 ~ 23735293 (+) True G64127
TU85820 lncRNA upstream 192093 23525647 ~ 23562232 (+) False LOC120560905
TU85783 lncRNA upstream 311012 23431481 ~ 23443313 (+) False LOC120560908
XR_005639533.1 lncRNA upstream 311344 23435058 ~ 23442981 (+) True LOC120560908
TU85948 lncRNA downstream 110501 24015078 ~ 24017068 (+) True G64172
TU85963 lncRNA downstream 145391 24049968 ~ 24058761 (+) True G64183
TU85970 lncRNA downstream 196929 24101506 ~ 24104352 (+) True G64188
TU85984 lncRNA downstream 260100 24164677 ~ 24169528 (+) True G64200
TU85987 lncRNA downstream 260100 24164677 ~ 24168564 (+) False G64200
XM_039803799.1 mRNA upstream 31796 23704402 ~ 23722529 (+) True ercc6l2
XM_039803800.1 mRNA upstream 31796 23706277 ~ 23722529 (+) False ercc6l2
XM_039803796.1 mRNA upstream 192040 23487967 ~ 23562285 (+) True LOC120560905
XM_039803798.1 mRNA upstream 266819 23408216 ~ 23487506 (+) True dock8
XM_039804011.1 mRNA upstream 400061 23352950 ~ 23354264 (+) True LOC120561043
XM_039803739.1 mRNA downstream 88076 23992653 ~ 24000805 (+) True si:dkey-250l23.4
XM_039802040.1 mRNA downstream 99505 24004082 ~ 24013484 (+) True rgs7bpa
XM_039802041.1 mRNA downstream 99508 24004085 ~ 24013484 (+) False rgs7bpa
XM_039803945.1 mRNA downstream 201413 24105990 ~ 24110189 (+) True c6h5orf51
XM_039803944.1 mRNA downstream 205743 24110320 ~ 24117183 (+) True fbxo4
TU85875 other upstream 61034 23692662 ~ 23693291 (+) True G64108
TU85622 other upstream 824120 22929899 ~ 22930205 (+) True G63905
XR_005639510.1 other upstream 2155526 21588876 ~ 21598799 (+) False LOC120560787
TU85087 other upstream 3076409 20676417 ~ 20677916 (+) True G63480
XR_005639483.1 other upstream 3265487 20477812 ~ 20488838 (+) False wdr31
XR_005639471.1 other downstream 919141 24823718 ~ 24834631 (+) False cdc14b
XR_005639472.1 other downstream 919142 24823719 ~ 24834620 (+) False cdc14b
TU86491 other downstream 1780395 25684972 ~ 25696570 (+) False LOC120561182
TU86550 other downstream 2009805 25914382 ~ 25915529 (+) False LOC120560031
TU86770 other downstream 2508292 26412869 ~ 26414597 (+) True G64814

Expression Profile